Helicobacter felis�CAssociated Gastric Disease in Microbiota-Restricted Mice

Human Helicobacter pylori infection leads to multiple pathological consequences, including gastritis and adenocarcinoma. Although this association has led to the classification of H. pylori as a type 1 carcinogen, it is not clear if additional nonhelicobacter gastric microbiota play a role in these diseases. In this study, we utilized either specific pathogen-free C57BL/6 mice (B6.SPF) or mice colonized with altered Schaedler flora (B6.ASF) to evaluate the role of nonhelicobacter gastric microbiota in disease development after Helicobacter felis infection. Despite similar histological changes, H. felis persisted in B6.ASF stomachs, while H. felis could no longer be detected in the majority of B6.SPF mice. The B6.SPF mice also acquired multiple Lactobacillus spp. in their stomachs after H. felis infection. Our data indicate that potential mechanisms responsible for the ineffective H. felis clearance in the B6.ASF model include the absence of new gastric microbiota to compete for the gastric niche, the lack of expression of new gastric mucins, and a reduced ratio of H. felis–specific IgG2c:IgG1 serum antibodies. These data suggest that although H. felis is sufficient to initiate gastric inflammation and atrophy, bacterial eradication and the systemic immune response to infection are significantly influenced by pre-existing and acquired gastric microbiota.     

Size and shape interspecific divergence patterns partly reflect phylogeny in an Onthophagus species‐complex (Coleoptera: Scarabaeidae)

Polyphenism has been suggested as an accelerator for morphological evolution and speciation. In the dung beetles of the genus Onthophagus, horn expression is polyphenic: large males develop horns whereas smaller males express greatly reduced or no horns. Horn static allometries seem to diverge rapidly amongst extant taxa, a process which might trigger changes in the male genital morphology, thus possibly promoting speciation as a by‐product. It can therefore be hypothesized that interspecific distances in allometries and, possibly, in other morphological traits mirror phylogenetic distances. In this study we first assessed the phylogenetic relationships amongst three closely related taxa belonging to the so‐called ‘Onthophagus fracticornis‐similis‐opacicollis’ species‐complex by sequencing the mitochondrial gene cytochrome oxidase subunit 1 (cox1). Biomolecular results indicated three independent lineages, the closest relationships being found between Onthophagus similis and Onthophagus opacicollis. Then we assessed the extent to which divergence pattern of horn static allometries and size and shape divergence patterns of one genital (paramere) and two nongenital (head and epipharynx) structures mirrored the phylogenetic relationships. Interspecific divergence patterns of horn static allometries, paramere, and head shape were found to be congruent with the evolutionary relationships inferred from biomolecular data. Nevertheless, paramere size and epipharynx shape showed patterns not consistent with the phylogeny. Furthermore, the relative size of nongenital structures showed little interspecific divergence compared to their shapes. Our results suggest that size and shape interspecific divergence mirror phylogeny only in part; they also indicate that distinct morphological traits may differ in their tendency to evolve in concert, and that size and shape of the same trait can evolve independently across species. © 2011 The Linnean Society of London, Zoological Journal of the Linnean Society, 2011, 162 , 482–498.     

Testing congruency of geographic and genetic population structure for a freshwater mussel (Bivalvia: Unionoida) and its host fish

The macrogeographic dispersal of unionoid mussels is largely dependent on movement by their host fish. The snuffbox mussel Epioblasma triquetra (Unionoida) and other congeners use a novel trapping behaviour to parasitize potential host fish with their larvae (glochidia). Common logperch (Percina caprodes) trapped by E. triquetra survive the trapping behaviour, whereas other darter species (Etheostoma and Percina) do not, thus, making the P. caprodes–E. triquetra relationship a good candidate system for a coevolutionary study. We hypothesized that the geographic genetic structure of E. triquetra should closely match that of its host, albeit with greater interpopulation divergences as a result of its dependency on the host for dispersal. Mantel tests of parallel pairwise matrices of population divergence (Jost's D) and genetic assignment tests based on microsatellite DNA data showed that the genetic population structures of both species were broadly, but not perfectly, congruent. Therefore, it appears that P. caprodes are not solely responsible for the genetic population structure observed for snuffbox and may not necessarily be the mussel's only host across its entire range. This suggests the potential for a geographic mosaic for coevolution in unionoids and darters. The findings of the present study reinforce the need for a joint study and conservation of unionoids and host fish aiming to protect these coevolved taxa. © 2011 The Linnean Society of London, Biological Journal of the Linnean Society, 2011, 102 , 669–685.     

Variation in active and passive resource inputs to experimental pools: mechanisms and possible consequences for food webs

1. Cross‐ecosystem movements of resources, including detritus, nutrients and living prey, can strongly influence food web dynamics in recipient habitats. Variation in resource inputs is thought to be driven by factors external to the recipient habitat (e.g. donor habitat productivity and boundary conditions). However, inputs of or by ‘active’ living resources may be strongly influenced by recipient habitat quality when organisms exhibit behavioural habitat selection when crossing ecosystem boundaries. 2. To examine whether behavioural responses to recipient habitat quality alter the relative inputs of ‘active’ living and ‘passive’ detrital resources to recipient food webs, we manipulated the presence of caged predatory fish and measured biomass, energy and organic content of inputs to outdoor experimental pools of adult aquatic insects, frog eggs, terrestrial plant matter and terrestrial arthropods. 3. Caged fish reduced the biomass, energy and organic matter donated to pools by tree frog eggs by ～70%, but did not alter insect colonisation or passive allochthonous inputs of terrestrial arthropods and plant material. Terrestrial plant matter and adult aquatic insects provided the most energy and organic matter inputs to the pools (40–50%), while terrestrial arthropods provided the least (7%). Inputs of frog egg were relatively small but varied considerably among pools and over time (3%, range = 0–20%). Absolute and proportional amounts varied by input type. 4. Aquatic predators can strongly affect the magnitude of active, but not passive, inputs and that the effect of recipient habitat quality on active inputs is variable. Furthermore, some active inputs (i.e. aquatic insect colonists) can provide similar amounts of energy and organic matter as passive inputs of terrestrial plant matter, which are well known to be important. Because inputs differ in quality and the trophic level they subsidise, proportional changes in input type could have strong effects on recipient food webs. 5. Cross‐ecosystem resource inputs have previously been characterised as donor‐controlled. However, control by the recipient food web could lead to greater feedback between resource flow and consumer dynamics than has been appreciated so far.     

Protein domain definition should allow for conditional disorder

Abstract: Proteins are often classified in a binary fashion as either structured or disordered. However this approach has several deficits. Firstly, protein folding is always conditional on the physiochemical environment. A protein which is structured in some circumstances will be disordered in others. Secondly, it hides a fundamental asymmetry in behavior. While all structured proteins can be unfolded through a change in environment, not all disordered proteins have the capacity for folding. Failure to accommodate these complexities confuses the definition of both protein structural domains and intrinsically disordered regions. We illustrate these points with an experimental study of a family of small binding domains, drawn from the RNA polymerase of mumps virus and its closest relatives. Assessed at face value the domains fall on a structural continuum, with folded, partially folded, and near unstructured members. Yet the disorder present in the family is conditional, and these closely related polypeptides can access the same folded state under appropriate conditions. Any heuristic definition of the protein domain emphasizing conformational stability divides this domain family in two, in a way that makes no biological sense. Structural domains would be better defined by their ability to adopt a specific tertiary structure: a structure that may or may not be realized, dependent on the circumstances. This explicitly allows for the conditional nature of protein folding, and more clearly demarcates structural domains from intrinsically disordered regions that may function without folding.     

Applications of radio frequency identification (RFID) in ornithological research: a review

ABSTRACT Radio frequency identification (RFID) technology allows the unique identification of individuals and automated recording of the presence of tagged birds at fixed locations. Investigators have used RFID technology to examine questions related to pair formation, feeding rates, incubation behavior, prospecting behavior by nonbreeding birds, temporal changes in body condition, postfledging movements, dispersal, homing behavior, and other areas of ornithological interest. This technology can enable researchers to explore novel areas of inquiry and gather previously unobtainable quantities of information, allowing birds to record their own behavior without repeated capture and handling. In addition, RFID technology can be linked with other instruments, such as automated weighing devices, video cameras, infrared beams to detect the direction of movement, and temperature loggers, to collect additional data. New, inexpensive RFID technology has removed cost as a major constraint to the wider implementation of RFID in ornithological research. Because the technology requires that focal individuals come near (<10 cm) a reading antenna, RFID is not appropriate for all study systems and research questions. However, integrating RFID technology with additional instrumentation platforms and external data sets will continue to revolutionize studies of avian biology and behavior.     

Population status,habitat dependence,and reproductive ecology of Bahama Orioles: a critically endangered synanthropic species

ABSTRACT Recent elevation of critically endangered Bahama Orioles (Icterus northropi) to species status prompted us to evaluate their population status, habitat use, and breeding ecology. From surveys, we estimated that at least 141 to 254 individuals remain globally, with 90 to 162, 24 to 44, and 27 to 48 individuals remaining on North Andros Island, Mangrove Cay, and South Andros Island, The Bahamas, respectively. Orioles were observed nesting exclusively in anthropogenic habitat (residential and agricultural land), but home ranges also included nearby pine forest and coppice (dry broadleaf forest). Most nests (40 of 46, or 87%) were in nonnative coconut palm (Cocos nucifera), with native Sabal palmetto and Thrinax morrisii, and an introduced Brassaia actinophylla also used. Trees selected by orioles for nesting were significantly taller, less likely to have shrubs underneath, further from cover, and had more palm trees nearby than randomly selected palm trees. Three of eight nests with known contents were parasitized by Shiny Cowbirds (Molothrus bonariensis). Lethal yellowing disease recently devastated coconut palms and reduced the number of orioles on North Andros, but palms on Mangrove Cay and South Andros remain healthy. The juxtaposition of anthropogenic habitat to suitable native habitats may be more important than any single factor for Bahama Orioles, especially for breeding adults and fledged young. Conservation of coppice habitat, at high risk for agricultural and residential development, is crucial for survival of this critically endangered synanthropic species.     

Community‐wide impact of an exotic aphid on introduced tall goldenrod

1. The aphid Uroleucon nigrotuberculatum Olive, which is specialised to the tall goldenrod, Solidago altissima L., in its native range, has become a dominant species on the introduced tall goldenrod in Japan. How this exotic aphid influenced arthropod communities on the introduced tall goldenrod in aphid‐present (spring) and aphid‐absent (autumn) seasons was examined, using an aphid removal experiment. 2. In spring, aphid presence increased ant abundance because aphid honeydew attracted foraging ant workers. A significant negative correlation was found between the numbers of ants and herbivorous insects other than aphids on the aphid‐exposed plants, but no significant correlation was detected on the aphid‐free plants. Thus, the aphid presence was likely to decrease the abundance of co‐occurring herbivorous insects through removal behaviour of the aphid‐tending ants. There were no significant differences in plant traits between the aphid‐exposed and aphid‐free plants. 3. In autumn, the numbers of lateral shoots and leaves, and the leaf nitrogen content were increased in response to the aphid infestation in spring. Because of the improvement of plant traits by aphid feeding, the abundance of leaf chewers increased on aphid‐exposed plants. In contrast, the abundance of sap feeders decreased on the aphid‐exposed plants. In particular, the dominant scale insect among sap feeders, Parasaissetia nigra Nietner, decreased, followed by a decrease in the abundance of ants attending P. nigra. Thus, aphid feeding may have attenuated the negative impacts of the tending ants on leaf chewers. 4. Aphid presence did not change herbivore species richness but changed the relative density of dominant herbivores, resulting in community‐wide effects on co‐occurring herbivores through ant‐mediated indirect effects, and on temporally separated herbivores through plant‐ and ant‐mediated indirect effects. The aphid also altered predator community composition by increasing and decreasing the relative abundance of aphid‐tending ants in the spring and autumn, respectively.