Functional trait differences influence neighbourhood interactions in a hyperdiverse Amazonian forest

As distinct community assembly processes can produce similar community patterns, assessing the ecological mechanisms promoting coexistence in hyperdiverse rainforests remains a considerable challenge. We use spatially explicit neighbourhood models of tree growth to quantify how functional trait and phylogenetic similarities predict variation in growth and crowding effects for the 315 most abundant tree species in a 25‐ha lowland rainforest plot in Ecuador. We find that functional trait differences reflect variation in (1) species maximum potential growth, (2) the intensity of interspecific interactions for some species, and (3) species sensitivity to neighbours. We find that neighbours influenced tree growth in 28% of the 315 focal tree species. Neighbourhood effects are not detected in the remaining 72%, which may reflect the low statistical power to model rare taxa and/or species insensitivity to neighbours. Our results highlight the spectrum of ways in which functional trait differences can shape community dynamics in highly diverse rainforests.     

多变量置信区间法和模型依赖法在溶出曲线 相似性比较中的应用

根据 FDA 和 CFDA 口服固体制剂溶出度试验技术指导原则的要求,为防止仿制药一致性评价过程中相似因子(f2)法的滥用和 不恰当应用,采用样本数据实例演示的方式说明多变量置信区间法和模型依赖法作为补充手段在溶出曲线相似性比较和 BE 风险预评估中 的重要性。     

Differential Expression and Network Inferences through Functional Data Modeling

Summary .  Time course microarray data consist of mRNA expression from a common set of genes collected at different time points. Such data are thought to reflect underlying biological processes developing over time. In this article, we propose a model that allows us to examine differential expression and gene network relationships using time course microarray data. We model each gene-expression profile as a random functional transformation of the scale, amplitude, and phase of a common curve. Inferences about the gene-specific amplitude parameters allow us to examine differential gene expression. Inferences about measures of functional similarity based on estimated time-transformation functions allow us to examine gene networks while accounting for features of the gene-expression profiles. We discuss applications to simulated data as well as to microarray data on prostate cancer progression.     

Inventory, differentiation, and proportional diversity: a consistent terminology for quantifying species diversity

Almost half a century after Whittaker (Ecol Monogr 30:279–338, 1960) proposed his influential diversity concept, it is time for a critical reappraisal. Although the terms alpha, beta and gamma diversity introduced by Whittaker have become general textbook knowledge, the concept suffers from several drawbacks. First, alpha and gamma diversity share the same characteristics and are differentiated only by the scale at which they are applied. However, as scale is relative––depending on the organism(s) or ecosystems investigated––this is not a meaningful ecological criterion. Alpha and gamma diversity can instead be grouped together under the term “inventory diversity.” Out of the three levels proposed by Whittaker, beta diversity is the one which receives the most contradictory comments regarding its usefulness (“key concept” vs. “abstruse concept”). Obviously beta diversity means different things to different people. Apart from the large variety of methods used to investigate it, the main reason for this may be different underlying data characteristics. A literature review reveals that the multitude of measures used to assess beta diversity can be sorted into two conceptually different groups. The first group directly takes species distinction into account and compares the similarity of sites (similarity indices, slope of the distance decay relationship, length of the ordination axis, and sum of squares of a species matrix). The second group relates species richness (or other summary diversity measures) of two (or more) different scales to each other (additive and multiplicative partitioning). Due to that important distinction, we suggest that beta diversity should be split into two levels, “differentiation diversity” (first group) and “proportional diversity” (second group). Thus, we propose to use the terms “inventory diversity” for within-sample diversity, “differentiation diversity” for compositional similarity between samples, and “proportional diversity” for the comparison of inventory diversity across spatial and temporal scales. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Coexistence in a metacommunity: the competition-colonization trade-off is not dead

The competition–colonization trade-off model is often used to explain the coexistence of species. Yet its applicability has been severely criticized, mainly because the original model assumed a strict competitive hierarchy of species and did not allow for any preemptive effect. We considered the impact of relaxing both of these limitations on coexistence. Relaxing trade-off intensity makes coexistence less likely and introduces a minimum colonization rate below which any coexistence is impossible. Allowing for preemption introduces a limit to dissimilarity between species. Surprisingly, preemption does not impede coexistence as one could presume from previous studies, but can actually increase the likelihood of coexistence. Its effect on coexistence depends on whether or not species in the regional pool are strongly limited in their colonization ability. Preemption is predicted to favour coexistence when: (i) species are not strongly limited in their colonization ability; and (ii) the competitive trade-off is not infinitely intense.     

Rep-PCR应用于快速鉴定啤酒污染菌的研究

为评价rep-PCR在快速鉴定啤酒污染菌中的应用,首先比较了DNA提取方法,确定CTAB法作为制备rep-PCR的DNA模板的方法。并通过PCR产物直接测序的方法,从分离菌中鉴定得到11种常见的啤酒污染菌。用BOXA1R和(GTG)_5引物扩增分离菌,采用Gel ComparⅡ软件处理电泳图,构建污染菌的标准指纹图库。经过聚类分析表明,BOXA1R和(GTG)5对Lactobacillusbrevis、L.buchneri、L.casei/paracasei、L.plantarum和L.fermentum的聚类效果具有互补性,并首次提出指纹比对快速鉴定的相似系数阈值的概念。对来自三个不同来源的9株乳酸菌的快速鉴定结果表明,rep-PCR鉴定技术简单、快速、可靠,在快速鉴定方面将具有重要的应用价值。     

Development, characterization and inheritance of new microsatellites in olive (Olea europaea L.) and evaluation of their usefulness in cultivar identification and genetic relationship studies

Twelve new microsatellites have been developed in olive. For that purpose, a genomic library of the olive cultivar ‘Arbequina’ was enriched for GA, GT and ACT repeats. Two methods of screening yielded 27 sequences containing microsatellites out of the 119 clones sequenced. The GA repeat seems to be the most abundant motif. Among sequences containing microsatellites, 4 (14.8%) were redundant, 1 (3.7%) was previously described in the literature and 12 (44.4%) could not be used for primers design because the repeat motifs were incomplete. Suitable primer pairs were obtained for the remaining 10 (37.0%) sequences plus an additional 14 recovered from a formerly developed library. For the 24 primer pairs designed, 4 failed to amplify, 8 produced a complex bands pattern and 12 succeeded in giving amplification products. Considering these 12 primer pairs, 10 showed single locus amplification, whereas the other 2 revealed two loci each. This was demonstrated by studying allele segregation in two olive progenies. Sixty-eight alleles were detected for the 12 microsatellites when 51 olive cultivars were analysed. The number of alleles per locus ranged from 1 to 13. The expected heterozygosity varied between 0 and 0.83. All pairs of cultivars could be distinguished using only three microsatellites due to their great discrimination power value. The data coming from genotyping the 51 olive cultivars for 7 out of the 12 new microsatellites were used for constructing a dendrogram by unweighted pair group method with arithmetic mean cluster analysis using the Dice similarity coefficient. Cultivar association according to their geographical origin was observed.     

宁夏六盘山地区蝶类区系研究

分析研究六盘山地区蝶类区系,结果表明:六盘山地区蝴蝶共有5科68属130种,其中宁夏新纪录种52种;组成以古北区和东洋区共有种为主体,占总种数的67.69%;区系过渡性明显。     

民勤沙区几种荒漠植物群落的现实生态位研究

民勤沙区属于典型的干旱荒漠气候,植被以灌木荒漠为主,盖度一般只有5%~15%.植物群落内生态位宽度悬殊,植物种之间的生态位相似比例很小.生态位宽度和生态位相似比例小是受制于干旱荒漠生境条件的结果,是干旱荒漠生态环境中稀疏荒漠植物的主要特征之一.植物的现实生态位宽度与年际降水量关系密切,在地貌、土壤颗粒、土壤水分、土壤养分等影响因子中,土壤水分是主导因子.当地地下水位深20 m左右,植物无法利用,植物种之间对资源的竞争主要表现为对水分资源的竞争,降水资源是植物种之间竞争的关键资源.同一种植物在不同群落中的生态位宽度变幅较大,不同群落内部植物种竞争关系的差异是由物种的生态位和由相对稳定的地貌、土壤条件以及随年际变动的降水条件共同作用的结果.群落中的优势种植物的生态位最宽,当优势种生态位减小时,一年生短命植物往往会进入群落中.荒漠植物的冠层单一,以冠幅占样方面积比作为植物的特征值计算其生态位特征值比较准确可靠.     

东北地区不同生境内蝗虫区系的比较

经过多年的调查,并参考其他研究成果,在所设的8个样点中统计出蝗虫7科,39属,107种。分析了东北地区蝗虫的群落结构、各蝗种的区系地理成分、种属分配,并讨论了该区蝗虫的地理分布关系等。结果表明,东北地区的蝗虫古北种占绝对优势,约占总种类数的87.85%,在所调查的8种类型的生境中,长白山地区的蝗虫种类最为丰富,向海自然保护区的蝗虫种类最少,并且和其他各生境蝗虫组成的相似性指数均较低。