Bacterial pathogens in wild birds: a review of the frequency and effects of infection

The importance of wild birds as potential vectors of disease has received recent renewed empirical interest, especially regarding human health. Understanding the spread of bacterial pathogens in wild birds may serve as a useful model for examining the spread of other disease organisms, both amongst birds, and from birds to other taxa. Information regarding the normal gastrointestinal bacterial flora is limited for the majority of wild bird species, with the few well-studied examples concentrating on bacteria that are zoonotic and/or relate to avian species of commercial interest. However, most studies are limited by small sample sizes, the frequent absence of longitudinal data, and the constraints of using selective techniques to isolate specific pathogens. The pathogenic genera found in the gut are often those suspected to exist in the birds' habitat, and although correlations are made between bacterial pathogens in the avian gut and those found in their foraging grounds, little is known about the effect of the pathogen on the host, unless the causative organism is lethal. In this review, we provide an overview of the main bacterial pathogens isolated from birds (with particular emphasis on enteropathogenic bacteria) which have the potential to cause disease in both birds and humans, whilst drawing attention to the limitations of traditional detection methods and possible study biases. We consider factors likely to affect the susceptibility of birds to bacterial pathogens, including environmental exposure and heterogeneities within the host population, and present probable avenues of disease transmission amongst birds and from birds to other animal taxa. Our primary aim is to identify gaps in current knowledge and to propose areas for future study.     

The Effects of Bacterial Leaching on Metal Partitioning in Sewage Sludge

The partitioning of Mn, Al, Zn, Cu and Ti ions in municipal sewage sludge was investigated before and after bioleaching processes effectuated by Acidithiobacillus ferrooxidans and Acidithiobacillus thiooxidans. Oxidation–reduction potential increase and pH decrease were obtained as a result of bacterial activity. A less pronounced and constant decrease was obtained with A. ferrooxidans, whereas A. thiooxidans presented a lag phase before a steep pH decrease. Metal solubilization was accomplished in experimental systems supplemented with energy source, Fe²⁺ for A. ferrooxidans and S⁰ for A. thiooxidans. Solubilization efficiency differed for each metal except for Al, and was relatively similar for either organism. Metal partitioning was conducted using a five-step sequential extraction procedure before and after the bioleaching. The results indicated that Zn and Mn ions were mostly associated with the organic fraction, whereas Cu, Al and Ti ions with the sulphide/residue fraction. The bioleaching process caused prompt solubilization of metals mostly associated with the more labile fractions (exchangeable, adsorbed and organically bound metals), whereas those associated to the less labile ones (EDTA and sulphide/residue fractions) were exchanged towards more labile fractions.     

Complete genome sequence of Sphaerobacter thermophilus type strain (S 6022)

Sphaerobacter thermophilus Demharter et al. 1989 is the sole and type species of the genus Sphaerobacter, which is the type genus of the family Sphaerobacteraceae, the order Sphaerobacterales and the subclass Sphaerobacteridae. Phylogenetically, it belongs to the genomically little studied class of the Thermomicrobia in the bacterial phylum Chloroflexi. Here, the genome of strain S 6022(T) is described which is an obligate aerobe that was originally isolated from an aerated laboratory-scale fermentor that was pulse fed with municipal sewage sludge. We describe the features of this organism, together with the complete genome and annotation. This is the first complete genome sequence of the thermomicrobial subclass Sphaerobacteridae, and the second sequence from the chloroflexal class Thermomicrobia. The 3,993,764 bp genome with its 3,525 protein-coding and 57 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.     

菲污染土壤的微生物修复机制

菲(Phenanthrene)是存在于煤焦油中,含三个苯环的稠环芳烃。除了具有"三致"作用外,菲稳定的化学结构和高辛醇-水分配系数等特性,使其具备较强的抗降解能力,易在环境中富集,破坏土壤微生态结构,降低农作物品质,威胁人类健康。而且随着化石燃料的长期大量使用,受菲污染的土地面积也急速增加,给人类的健康及生产活动带来极大的威胁。因此,有效清除土壤中菲及其他多环芳烃污染物,净化环境,具有重要的现实意义。微生物降解作为治理菲污染的方法之一,具有高效、低成本、环境友好的特点,受到研究者的高度重视。本文从菲降解菌的种类、降解机理、分子机制、影响修复等因素及微生物与植物联合修复五个方面进行综述,为进一步利用环境微生物,开发高效菲降解菌,治理菲污染提供参考。     

Phycoremediation of municipal wastewater by microalgae to produce biofuel

Municipal wastewater (WW), if not properly remediated, poses a threat to the environment and human health by carrying significant loads of nutrients and pathogens. These contaminants pollute rivers, lakes, and natural reservoirs where they cause eutrophication and pathogen-mediated diseases. However, the high nutrient content of WW makes it an ideal environment for remediation with microalgae that require high nutrient concentrations for growth and are not susceptible to toxins and pathogens. Given that an appropriate algal strain is used for remediation, the incurred biomass can be refined for the production of biofuel. Four microalgal species (Chlamydomonas reinhardtii, Chlorella sp., Parachlorella kessleri-I, and Nannochloropsis gaditana) were screened for efficient phycoremediation of municipal WW and potential use for biodiesel production. Among the four strains tested, P. kessleri-I showed the highest growth rate and biomass production in 100% WW. It efficiently removed all major nutrients with a removal rate of up to 98% for phosphate after 10 days of growth in 100% municipal WW collected from Delhi. The growth of P. kessleri-I in WW resulted in a 50% increase of biomass and a 115% increase of lipid yield in comparison to growth in control media. The Fatty acid methyl ester (FAME), and fuel properties of lipids isolated from cells grown in WW complied with international standards. The present study provides evidence that the green alga P. kessleri-I effectively remediates municipal WW and can be used to produce biodiesel.     

Establishment of Restoration Trajectories for Upland Tundra Communities on Diamond Mine Wastes in the Canadian Arctic

Mining in the arctic amplifies restoration challenges due to inherent environmental conditions by removing soil, vegetation, and the propagule bank, adding coarse textured wastes with low water holding capacity and nutrients, and introducing salt and metal contamination. Short‐term reclamation focuses on rebuilding soil and providing rapid native plant cover for erosion control, supporting longer term reestablishment of ecological processes for sustainable tundra communities that provide essential wildlife habitat. This study evaluated methods to restore soil and plant communities 5 years after implementation of treatments at a diamond mine in the Canadian arctic. Five substrates including mine waste materials (processed kimberlite, glacial till, gravel, and mixes), four amendments (inorganic fertilizer, salvaged soil, sewage sludge, and water treatment sludge), five native species seed mixes and natural recovery were investigated. Soil and plant response were assessed annually. Soil chemistry was ameliorated with time. Chromium, cobalt, and nickel concentrations in processed kimberlite remained high and potentially toxic to plants. Adding fine textured materials such as glacial till to mine wastes improved nutrient and water retention, which in turn enhanced revegetation. Sewage and inorganic fertilizer increased available nitrogen and phosphorus, plant density and cover. Soil amendment increased species richness. Seeding was essential to establish a vegetation cover. After 5 years, seed mix composition and diversity had no effect on plant community development; soil and plant community properties among treatments changed considerably, providing evidence that restoration in the arctic is dynamic yet slow and success cannot be determined in the short term.     

高铁酸钾氧化去除饮用水中微量苯酚的研究

采用次氯酸盐氧化法合成高铁酸钾,测试了其对水中苯酚的氧化去除效果及其影响因素.结果表明,苯酚的去除效率主要取决于高铁酸钾和苯酚的质量比.在酸性条件下高铁酸钾对苯酚的去除效果较好.高铁酸钾与苯酚反应主要发生在最初的几分钟时间内,是一个由快而慢的过程.     

鄱阳湖围垦区藕塘越冬白鹤的时间分配与行为节律

2016年12月—2017年3月,采用瞬时扫描法研究了鄱阳湖围垦区藕塘生境中白鹤Grus leucogeranus越冬期的行为,共扫描2560次,23219只次,包括18031只次成鹤和5188只次幼鹤。结果表明,觅食(41.78%)、警戒(25.02%)、修整(15.00%)和休息(10.84%)是白鹤越冬期的主要行为。与自然生境相比,藕塘生境中白鹤主要采取多休息和修整的策略来节省能量支出。成鹤的觅食行为(35.29%)显著低于幼鹤(62.42%)(F_(1,12)=45.977,P0.01),警戒行为(28.66%)则显著高于幼鹤(10.26%)(F_(1,12)=38.975,P0.01)。家庭群成鹤觅食行为(43.96%)极显著高于非家庭群成鹤(27.04%)(F_(1,12)=60.169,P0.01)。家庭群成鹤需要喂食幼鹤,它们花费更多的时间觅食弥补能量的消耗。行为节律上,白鹤各时段觅食行为占总行为的比例均较高,11:00—11:59出现明显高峰,占总行为的48.64%。警戒行为无明显的低谷和高峰。成鹤在各时段的觅食行为比例均明显低于幼鹤,成鹤和幼鹤的觅食曲线变化趋势相似,即觅食比例的升高和降低比较同步。成鹤在各时段的警戒行为和修整行为比例均明显高于幼鹤,成幼鹤的休息行为比例在各时段差别不大,均在14:00—14:59有个明显的高峰。家庭群成鹤的觅食行为比例几乎在各时段均明显高于非家庭群,家庭群成鹤的修整行为和休息行为在大部分时段均低于非家庭群成鹤。因此家庭群成鹤采取多取食,少休息和修整的策略提高自身的适合度,同时保证对后代的抚育。