DNA barcoding of freshwater ichthyoplankton in the Neotropics as a tool for ecological monitoring

Quantifying and classifying ichthyoplankton is one of the most effective ways of monitoring the recruitment process in fishes. However, correctly identifying the fish based on morphological characters is extremely difficult, especially in the early stages of development. We examined ichthyoplankton from tributaries and reservoirs along the middle stretch of the Paranapanema River, one of the areas most impacted by hydroelectric projects in the Neotropics. Matching DNA sequences of the COI gene (628–648 bp) allowed us to identify 99.25% of 536 samples of eggs (293) and larvae (243) subjected to BOLD‐IDS similarity analysis with a species‐level threshold of 1.3%. The results revealed 37 species in 27 genera, 15 families and four orders, some 23.8% of documented fish species in the Paranapanema River. Molecular identification meant that we could include data from egg samples that accounted for about 30% of the species richness observed. The results in this study confirm the efficacy of DNA barcoding in identifying Neotropical ichthyoplankton and show how the data produced provide valuable information for preparing plans for conserving and managing inland waters.     

Ultrastructure of the ovarian follicles in the placentotrophic Andean lizard of the genus Mabuya (Squamata: Scincidae)

We studied the ultrastructural organization of the ovarian follicles in a placentotrophic Andean lizard of the genus Mabuya. The oocyte of the primary follicle is surrounded by a single layer of follicle cells. During the previtellogenic stages, these cells become stratified and differentiated in three cell types: small, intermediate, and large globoid, non pyriform cells. Fluid‐filled spaces arise among follicular cells in late previtellogenic follicles and provide evidence of cell lysis. In vitellogenic follicles, the follicular cells constitute a monolayered granulosa with large lacunar spaces; the content of their cytoplasm is released to the perivitelline space where the zona pellucida is formed. The oolemma of younger oocytes presents incipient short projections; as the oocyte grows, these projections become organized in a microvillar surface. During vitellogenesis, cannaliculi develop from the base of the microvilli and internalize materials by endocytosis. In the juxtanuclear ooplasm of early previtellogenic follicles, the Balbiani's vitelline body is found as an aggregate of organelles and lipid droplets; this complex of organelles disperses in the ooplasm during oocyte growth. In late previtellogenesis, membranous organelles are especially abundant in the peripheral ooplasm, whereas abundant vesicles and granular material occur in the medullar ooplasm. The ooplasm of vitellogenic follicles shows a peripheral band constituted by abundant membranous organelles and numerous vesicular bodies, some of them with a small lipoprotein core. No organized yolk platelets, like in lecithotrophic reptiles, were observed. Toward the medullary ooplasm, electron‐lucent vesicles become larger in size containing remains of cytoplasmic material in dissolution. The results of this study demonstrate structural similarities between the follicles of this species and other Squamata; however, the ooplasm of the mature oocyte of Mabuya is morphologically similar to the ooplasm of mature oocytes of marsupials, suggesting an interesting evolutionary convergence related to the evolution of placentotrophy and of microlecithal eggs. J. Morphol., 2010. © 2010 Wiley‐Liss, Inc.     

Species-specific genetic markers for identification of early life-history stages of Cape hakes, Merluccius capensis and Merluccius paradoxus in the southern Benguela Current

The correct identification of fish egg and larval stages is crucial for inferring spawning areas and subsequent dispersal routes for marine fishes. The authors use species-specific mtDNA polymerase chain reaction to estimate proportions of Merluccius capensis and Merluccius paradoxus eggs and larvae and to elucidate early life stage distribution patterns in the southern Benguela system.     

Shorebird predation of horseshoe crab eggs in Delaware Bay: species contrasts and availability constraints

1. Functional responses -- the relationship between resource intake rate and resource abundance -- are widely used in explaining predator-prey interactions yet many studies indicate that resource availability is crucial in dictating intake rates. 2. For time-stressed migrant birds refuelling at passage sites, correct decisions concerning patch use are crucial as they determine fattening rates and an individual's future survival and reproduction. Measuring availability alongside abundance is essential if spatial and temporal patterns of foraging are to be explained. 3. A suite of shorebird species stage in Delaware Bay where they consume horseshoe crab Limulus polyphemus eggs. Several factors including spawning activity and weather give rise to marked spatial and temporal variation in the abundance and availability of eggs. We undertook field experiments to determine and contrast the intake rates of shorebird species pecking for surface and probing for buried eggs. 4. Whether eggs were presented on the sand surface or buried, we demonstrate strong aggregative responses and rapid depletion (up to 80%). Depletion was greater at deeper depths when more eggs were present. No consistent give-up densities were found. Type II functional responses were found for surface eggs and buried eggs, with peck success twice as high in the former. Maximum intake rates of surface eggs were up to 83% higher than those of buried eggs. 5. Caution is needed when applying functional responses predicted on the basis of morphology. Our expectation of a positive relationship between body size and intake rate was not fully supported. The smallest species, semipalmated sandpiper, had the lowest intake rate but the largest species, red knot, achieved only the same intake rate as the mid-sized dunlin. 6. These functional responses indicate that probing is rarely more profitable than pecking. Currently, few beaches provide egg densities sufficient for efficient probing. Areas where eggs are deposited on the sand surface are critical for successful foraging and ongoing migration. This may be especially true for red knot, which have higher energetic demands owing to their larger body size yet appear to have depressed intake rates because they consume smaller prey than their body size should permit.     

西伯利亚蝗卵发育过程的比较转录组分析及滞育关联基因筛选

【目的】通过筛选西伯利亚蝗Gomphocerus sibiricus卵滞育基因及代谢通路,初步明确西伯利亚蝗卵滞育分子机理。【方法】利用Illumina NovaSeq 6000测序平台对西伯利亚蝗早期发育(ES)、滞育(DS)和滞育后发育阶段(PS)的卵进行转录组测序;采用GO和KEGG富集分析并结合文献,预测滞育相关通路并聚类热图分析,筛选蝗卵滞育关联基因,并选取其中6个重要基因进行qRT-PCR验证。【结果】DSvs ES和PS vs DS两比较组分别富集到12 419和4 789个差异表达基因,且多上调表达;两比较组共表达差异基因为2 206个,主要与糖代谢、环境胁迫和生长发育相关。DS vs ES组富集最显著的GO条目为蛋白结合,PS vs DS组GO条目主要包含酶活性、细胞骨架构建及蛋白结合等过程。滞育关联基因主要集中在Wnt信号通路、胰岛素信号通路、细胞周期通路以及昆虫激素生物合成等通路。6个重要的滞育关联基因的表达量变化趋势与转录组数据结果基本一致。【结论】本研究初步明确了西伯利亚蝗卵滞育调控的重要代谢途径,并筛选出20个滞育关联基因,为后续深入研究该物种的适应机理奠定了基础。     

NaCl盐度和NaHCO3碱度对松浦镜鲤、方正鲫的孵化及其仔鱼存活的影响

研究了NaCl盐度(0、1、3、5、7、9)和NaHCO3碱度(1.00 mmol/L、10.00 mmol/L、15.85 mmol/L、25.12 mmol/L、39.81 mmol/L、63.10 mmol/L)对松浦镜鲤(Cynipus carpio)与方正鲫(Carassius auratus gibelio)的孵化率、畸形率以及仔鱼24 h和48 h存活率的影响。1盐度实验结果,松浦镜鲤在盐度为0、1时,受精卵的孵化率较高,平均为72.40%±6.09%;在盐度0~3时,孵出仔鱼畸形率较低,平均为6.02%±1.87%,48 h存活率较高,平均为94.99%±6.44%。方正鲫在盐度0~3时,受精卵的孵化率较高,平均为68.03%±15.44%;在盐度0~5时,孵出仔鱼畸形率较低,平均为7.95%±3.24%,48 h存活率较高,平均为88.52%±9.19%。2碱度实验结果,这两种鱼的孵化率在碱度1.00~25.12 mmol/L时较高,松浦镜鲤平均为47.96%±8.43%,方正鲫平均为66.23%±18.11%。畸形率在碱度1.00~15.85 mmol/L范围内较低,松浦镜鲤平均为12.47%±3.77%,方正鲫平均为12.46%±8.44%。48 h存活率在碱度1.00~15.85 mmol/L时较高,松浦镜鲤平均为96.16%±5.04%,方正鲫平均为85.62%±3.73%。综合各项指标,松浦镜鲤和方正鲫人工孵化用水建议盐度控制在3以内,碱度控制在15 mmol/L以内。     

四川都江堰东方草鸮的繁殖记录

<正>东方草鸮(Tyto longimembris)隶属于鸮形目草鸮科,共有6个亚种的分化,我国分布的2个亚种为T.l.chinensis和T.l.pithecops。东方草鸮在我国主要分布于西南和华南(chinensis)以及台湾(pithecops),国外分布于印度次大陆、东南亚、菲律宾、新几内亚岛和澳大利亚(del Hoyo et al.1999,郑光美2011)。在《中国鸟类分类与分布名录》(第二版)中,东方草鸮的分布区并不包括四川省。实际上,早在2000年时就曾有报道称在四川省南充市高坪区发现草鸮的分布(胡锦矗2000),一直未能引起关注。有关东方草鸮繁殖生物学的资料,大多来自国外的     

Parent–egg–progeny Relationships in Teleost Fishes: An Energetics Perspective

Age-related variations in chemical composition of egg matter were found in females in some studies, but they do not seem to be a universal phenomenon. In contrast, egg size can be well predicted from female age. The relationship has a parabolic shape, but the predicted size decrease of eggs from old females has not always been documented. Female size is an important contributor to egg size, both at intra- and inter-specific levels. Dependence of fecundity on body size has usually been described by a power function. A trade-off between egg number and size is considered in light of life history strategies. During a spawning season egg size may differ between successive batches, but lack of effects of egg batch sequence was reported in some studies. In yolk-feeding fish three discrete periods of elevated mortality are typically observed: shortly after egg activation, during hatching, and at final yolk resorption. The positive relationships between female size, egg size and offspring size/resistance to starvation and predation are a key pathway in parent–egg–progeny relationships. Both maternal and paternal effects contribute to the total survival of offspring, but they operate in different ways and at different times. In contrast to the importance of female size, no paternal size effects were revealed, but density and motility of spermatozoans were decisive. Typically, paternal effects diminish earlier in ontogeny. Major factors governing embryonic survival (fertilisation success and hatching success) differ from factors to which starvation mortality of yolk-feeding larvae is related. Embryonic survival is affected by female age via egg matter composition, by egg ripeness and paternal factors such as sperm density and motility. In contrast, starvation mortality of yolk-feeding larvae depends largely on female attributes (age, size and fecundity) via egg size, and, in some batch spawners, on egg batch sequence. Among teleost species egg size varies across a wide range (from 0.3 to 85–90 mm in diameter). Species that spawn large eggs are relatively rare. Caloric value of egg dry matter varies within a narrow range of 20–30 J mg⁻¹. Ecosystem and evolutionary components, and reproductive style are factors that contribute to egg endowment and yolk quality. During the last decade considerable progress was made in the methodology and understanding of paternal effect on progeny performance in fishes. This paper reviews these of parent–egg–progeny relationships.