Isolation and identification of lactic acid bacteria from sediments of a coastal marsh using a differential selective medium

Aims:  To identify lactic acid bacteria (LAB) colonies isolated from sediments of a coastal marsh by the reduction of 2,3,5‐triphenyltetrazolium chloride (TTC) in MRS medium. Methods and Results:  Single colonies isolated from sediments of a coastal marsh by enrichment in MRS broth were selected from MRS‐TTC plates and classified according to colony phenotype based on TTC reduction. A total of 37 colonies grouped in seven different phenotypes were identified by analysis of its 16S ribosomal gene sequence. Most isolates belonged to the Firmicutes phylum, mainly to orders Bacillales and Lactobacillales. LAB were represented by 20 isolates, 15 of which belong to the genus Weissella. Conclusions:  Enrichment in MRS was highly selective for the isolation of bacteria belonging to phylum Firmicutes. Several different phenotypes were developed by LAB and must be considered during LAB isolation based on TTC reduction. Significance and Impact of the Study:  To our knowledge, this is the first study aimed at determining a relationship between colony phenotype from TTC reduction and a partial identification of isolates based on 16S ribosomal gene sequence similarities. Besides, this is the first report of isolation of W. cibaria from environmental samples.     

The Biodiversity of Actinomycetes in Lake Baikal

The taxonomic analysis of 107 actinomycete strains isolated from the bottom sediments and water of Lake Baikal showed that most of the water isolates belong to the genus Streptomyces and most of the sediment isolates belong to the genus Micromonospora. In the sediments, the number of actinomycetes increased with depth (down to 200 m). Eight Streptomyces isolates were identified to a species level.     

Comparison of bacterial production in sediments, epiphyton and the pelagic zone of a lowland river

1. The microbial metabolism of organic matter in rivers has received little study compared with that of small streams. Therefore, we investigated the rate and location of bacterial production in a sixth‐order lowland river (Spree, Germany). To estimate the contribution of various habitats (sediments, epiphyton, and the pelagic zone) to total bacterial production, we quantified the contribution of these habitats to areal production by bacteria. 2. Large areas of the river bottom were characterized by loose and shifting sands of relatively homogenous particle size distribution. Aquatic macrophytes grew on 40% of the river bottom. Leaf areas of 2.8 m² m^?2 river bottom were found in a 6.6 km river stretch. 3. The epiphyton supported a bacterial production of 5–58 ng C cm^?2 h^?1. Bacterial production in the pelagic zone was 0.9–3.9 μg C L^?1 h^?1, and abundance was 4.0–7.8 × 10⁹ cells L^?1. Bacterial production in the uppermost 2 cm of sediments ranged from 1 to 8 μg C cm^?3 h^?1, and abundance from 0.84 to 6.7 × 10⁹ cells cm^?3. Bacteria were larger and more active in sediments than in the pelagic zone. 4. In spite of relatively low macrophyte abundance, areal production by bacteria in the pelagic zone was only slightly higher than in the epiphyton. Bacterial biomass in the uppermost 2 cm of sediments exceeded pelagic biomass by factors of 6–22, and sedimentary bacterial production was 17–35 times higher than in the overlying water column. 5. On a square meter basis, total bacterial production in the Spree was clearly higher than primary productivity. Thus, the lowland river Spree is a heterotrophic system with benthic processes dominating. Therefore, sedimentary and epiphytic bacterial productivity form important components of ecosystem carbon metabolism in rivers and shallow lakes. 6. The sediments are focal sites of microbial degradation of organic carbon in a sand‐bottomed lowland river. The presence of a lowland river section within a river continuum probably greatly changes the geochemical fluxes within the river network. This implies that current concepts of longitudinal biogeochemical relationships within river systems have to be revised.     

大理西湖流域开发历史与硅藻群落变化的模式识别

有关云南湖泊的研究长期集中于高原九大湖泊和水体富营养化评价,缺少对中小型水体及多重环境压力胁迫的综合研究.本文以大理西湖为例,结合沉积物记录与现代监测资料,甄别了气候变化和人类活动干扰下硅藻群落结构的长期响应模式及其驱动强度.结果表明: 20世纪50年代以前,大理西湖总体处于自然演化阶段;1950年代开始,围湖造田和流域改造的增强导致了水体营养水平增加、水动力条件改变,硅藻优势种由扁圆卵型藻替代为脆杆藻属;而1997年以来营养水平的快速增加和湖泊水动力的改变,促进了浮游藻类大量生长、底栖硅藻持续减少,同时水生植物快速退化、生态系统稳定性明显降低.因此,在长期流域开发的背景下,对云南中小型高山湖泊的有效保护需要评价流域开发类型、强度及全球变暖的长期影响.     

Impact of chromium-contaminated wastewaters on the microbial community of a river

The influence of chromium on the microbial community structure was analyzed in a river system subjected to long-term chromium contamination, by plating and by sequencing 16S rRNA genes cloned from DNA extracted from the river sediments. We also analyzed the influence of chromium on the ability of the microbial community to resist and reduce Cr(VI) and on its resistance to antibiotics. Shifts in the microbial community structure were analyzed by amplified ribosomal DNA restriction analysis fingerprinting. The isolates obtained were phylogenetically related to Actinobacteria, Firmicutes, Bacteroidetes and Proteobacteria, whereas Acidobacteria and Deltaproteobacteria were only revealed by clone analyses. Cr(VI)-resistant and Cr(VI)-reducing strains were isolated in all sites examined. However, each sample site had a microbial community with a different antibiotic resistance pattern. Our study seems to indicate that in this river ecosystem chromium influenced the microbial communities, altering some of their functional characteristics, such as the percentage of the microbial community able to resist or to reduce Cr(VI) and the phylogenetic groups isolated, but it did not affect the structural diversity. Furthermore, the concentration of Cr(VI) in the sediments could not be correlated with a lower number of bacteria or lower index of generic diversity, neither with the ability of the microbial community to resist or to reduce higher Cr(VI) concentrations.     

A test of normalization methods for marine sediment,including a new post-extraction normalization (PEN) technique

Chemical analyses of sediment are used for assessing the ability of sediment to support a healthy benthos (sediment quality) and for determining contaminant source and dispersion in aquatic systems. Total sediment analysis is used for sediment quality assessment, whereas source identification and dispersion requires normalised contaminant data. Normalized contaminant data are obtained by physical fractionation (size-normalization) of the sediment and analyses of a constant size fraction (usually the 62.5 m fraction), whereas elemental normalization uses the total sediment analysis normalized to a conservative element. Elemental normalization is preferable, as it is cheaper and less time consuming than size-normalization techniques. In addition, some contaminants associated with oxides and oxyhydroxides in the coarse fraction are excluded in fine fraction analyses. Five techniques used to normalize sedimentary contaminant data were tested in the current study, including a new post-extraction normalization method where total sediment data are normalized to the residue after digestion, on the assumption that this fraction acts as a diluent only. Results of the tests indicated that simple normalization to the mud fraction provides useful dispersion information, but that the post-extraction normalization method produced a superior indication of source. Limited source and dispersion information was gleamed from the elemental-normalization (Al, Fe) approach, whereas the size-normalization technique provided the clearest indication of source and dispersion. Simple mud normalization and post-extraction normaliaation methods should be considered because only one analysis provides sediment quality, as well as source and dispersion information. However, for detailed information on source and dispersion, size normalization is recommended.     

Video-logging for examining biogenic structures in deep heterogeneous subsurface sediments

Video-logging through a transparent tube is described as an alternative method for examining in situ the distribution of biogenic structures within the deep layers of heterogeneous sediments in which undisturbed cores are hard to be obtained. The method comprises four successive phases: the installation of transparent tubes into the sediment, the lowering of a video-camera for scanning sediments through the tube walls, the numerical treatment of images for correcting deformations and obtaining panoramic views of discrete sediment layers, and the mapping of biogenic structures. The method was used successfully to determine the density and depth distribution of galleries made by the oligochaetae Tubifex tubifex (Müller, 1874) within the infiltration bed of a stormwater basin.     

The Effect of Metal Concentration in Bottom Sediments on the Accumulation of Metals by the Mytilids Crenomytilus grayanus and Modiolus kurilensis

The relationship between the concentration of Pb, Cu, Cd, Zn, and Ag in soft tissues of mytilids Crenomytilus grayanus and Modiolus kurilensis and in bottom deposits was studied to determine the potential and limitations in the use of these molluscs as bioindicators of contamination of coastal waters near Vladivostok (northwest of the Sea of Japan). It was found that the mussel C. grayanus began to accumulate Pb and Cu after certain threshold concentrations of these metals (60 and 150 g/g respectively) in fine fractions of sediments was reached. Accumulation of Pb and Cu by M. kurilensis also depended on the level of sediment contamination, but the higher initial metal content in tissues and the higher individual variability reduced the sensitivity of this species as a bioindicator. Accumulation of Cd and especially of Zn in mytilid tissues is adjusted by the organism, which restricts the opportunity of their use for tracking the anthropogenic input of bioavailable forms of these metals.     

Biogeochemical cycling of methylmercury at Barn Island Salt Marsh,Stonington, CT,USA

Monomethylmercury (MMHg) is toxic, and is the primary form of Hg thatbioaccumulates in the food web. An understanding of its distribution,production, and transport is needed. Prior investigations indicate thatmethylation is mediated by sulfate-reducing bacteria, yet limited in highsulfate environments. High rates of microbial respiration and strong oxygengradients are found in salt marshes. It is hypothesized that significant in situ methylation takes place in the redox transition zone of sulfate rich( 28 mM) salt marsh sediment. Results from a water column surveyof Barn Island Salt Marsh in October 1996 showed that ca. 61pmol m^-2 d^-1 of dissolved MMHg were discharged toadjacent coastal waters, while 16 pmol m^-2 d^-1 ofparticulate MMHg were entrained in the marsh, implying an in situsource. In-sediment MMHg production rates were determined by²⁰³Hg radiotracer studies. At the surface, methylation rates variedover both long (i.e., 100's m; 11–1120 pmol m^-2 d^-1) andshort (i.e., 10 cm; 11–108 pmol m^-2 d^-1) spatial scales. Methylation rate profiles from both low and high MMHg production sitesexhibited an exponential decrease below the redox transition zone. Porewater was collected with multi-chambered in situ dialysis (30 kDa)samplers [Peepers] and analyzed for MMHg. Temporal differences in porewater MMHg accumulation (i.e., May > September > November)were found. Results from May showed a significant gradient at thesediment water interface. The transport out of the sediments estimated byFick's Law (ca. 390 pmol MMHg m-2 d^-1) suggeststhat MMHg entered the marsh water by diffusion. This workdemonstrates the potential for elevated in situ Hg methylation in highsulfate environments.     

Mercury distribution in estuarine environments from Argentina: the detoxification and recovery of salt marshes after 15 years

Total Hg contents from abiotic (surface sediments and suspendedparticulate matter) and biological (crabs, fishes and halophytes)compartments from Bahía Blanca estuary and Mar Chiquita CoastalLagoon, Argentina, have been monitored since the 1980's. At BahíaBlanca estuary, high Hg concentrations were recorded during the early1980's in surface sediments (0.34 ± 0.22 g/g) andsuspended particulate matter (0.19 ± 0.10 g/g). Fishspecies, Mustelus schmitti (0.89 ± 0.29 g/g), Paralichthys brasiliensis (0.85 ± 0.18 g/g) and Micropogonias furnieri (0.37 ± 0.11 g/g) also presentedhigh Hg concentrations. The large industrial nucleus located within theestuary has been identified as the main metal source for this environment.Hg contents from the same area during 1996–1998 were significantlylower: surface sediments (0.164 ± 0.023 g/g), suspendedparticulate matter (0.048 ± 0.0017 g/g), fish Micropogonias furnieri (0.13 ± 0.02 g/g) and crab Chasmagnathus granulata (0.334 ± 0.071 g/g). This trendof environmental detoxification is probably related with (i) thetechnological changes incorporated by the local industry, (ii) a mostadequate management of industrial effluents, and (iii) the removal ofgreat sediment volume by dredging and refill.During the 1980's Mar Chiquita Lagoon Hg concentrations reached 0.08± 0.01 g/g in surface sediments and 0.09 ±0.025 g/g in suspended particulate matter, and 0.14 ±0.04 g/g in the fish Basilichthys bonariensis and 0.22 ±0.08 g/g in Paralichthys brasiliensis, and 0.08 ±0.01 g/g in the crab C. granulata, Hg concentrations werelower than at Bahía Blanca. Remote Hg sources for this Coastal Lagoonand atmospheric and stream transport of Hg is proposed as major Hgsources, since no Hg point sources exists nearby. Mercury concentrationsrecorded in the 1996–1998 period were lower than those recorded inthe previous decade: surface sediments (0.019 ± 0.004 g/g), suspended particulate matter (0.030 ± 0.008 g/g), halophyte Spartina densiflora (0.013 ± 0.008 g/g) or crab C. granulata (0.011 ± 0.009 g/g).Both Hg bioaccumulation and biomagnification processes were verified inBahía Blanca estuary and in Mar Chiquita Coastal Lagoon. This apparentrecovery of both estuarine environments deserves to be carefully analyzed,in order to fully understand the foundations of these processes.