Gene-flow between niches facilitates local adaptation in sexual populations

In sexual populations, gene-flow between niches is predicted to have differential consequences on local adaptation contingent upon the nature of trade-offs underlying local adaptation. Sex retards local adaptation if antagonistic pleiotropy underlies trade-offs, but facilitates adaptation if mutation accumulation underlies trade-offs. We evaluate the effect of sex in heterogeneous environments by manipulating gene-flow between two niches in sexual and asexual populations using steady-state microcosm experiments with yeast. We find that only sex in the presence of gene-flow promotes simultaneous local adaptation to different niches, presumably as this exposes mutations neutrally accrued in alternate niches to selection. This finding aligns with work showing mutation accumulation underlies trade-offs to local adaptation in asexual microbes, and with inferences of divergence in the presence of gene-flow in natural sexual populations. This experiment shows that sex may be of benefit in heterogeneous environments, and thus helps explain why sex has been maintained more generally.     

Molecular phylogeny and diversification history of Prosopis (Fabaceae: Mimosoideae)

The genus Prosopis is an important member of arid and semiarid environments around the world. To study Prosopis diversification and evolution, a combined approach including molecular phylogeny, molecular dating, and character optimization analysis was applied. Phylogenetic relationships were inferred from five different molecular markers ( mat K- trn K, trn L- trn F, trn S- psb C, G3pdh, NIA). Taxon sampling involved a total of 30 Prosopis species that represented all Sections and Series and the complete geographical range of the genus. The results suggest that Prosopis is not a natural group. Molecular dating analysis indicates that the divergence between Section Strombocarpa and Section Algarobia plus Section Monilicarpa occurred in the Oligocene, contrasting with a much recent diversification (Late Miocene) within each of these groups. The diversification of the group formed by species of Series Chilenses, Pallidae, and Ruscifoliae is inferred to have started in the Pliocene, showing a high diversification rate. The moment of diversification within the major lineages of American species of Prosopis is coincident with the spreading of arid areas in the Americas, suggesting a climatic control for diversification of the group. Optimization of habitat parameters suggests an ancient occupation of arid environments by Prosopis species.  © 2008 The Linnean Society of London, Biological Journal of the Linnean Society , 2008, 93 , 621–640.     

Prospectives for applying molecular and genetic methodology to improve wheat cultivars in drought environments

With the advent of molecular biotechnologies, new opportunities are available for plant physiologists to study the relationships between wheat traits and their genetic control. The functional determinations of all genes that participate in drought adaptation or tolerance reactions are expected to provide an integrated understanding of the biochemical and physiological basis of stress responses in wheat. However, despite all the recent technological breakthroughs, the overall contribution of genomics-assisted breeding to the release of drought-resilient wheat cultivars has so far been marginal. This paper critically analyses how biotechnological, genetic and information tools can contribute to accelerating the release of improved, drought-tolerant wheat cultivars. Armed with such information from established models, it will be possible to elucidate the physiological basis of drought tolerance and to select genotypes with an improved yield under water-limited conditions.     

Stability of Model Membranes in Extreme Environments

The first forms of cellular life required a source of amphiphilic compounds capable of assembling into stable boundary structures. Membranes composed of fatty acids have been proposed as model systems of primitive membranes, but their bilayer structure is stable only within a narrow pH range and low ionic strength. They are particularly sensitive to aggregating effects of divalent cations (Mg+2, Ca+2, Fe+2) that would be present in Archaean sea water. Here we report that mixtures of alkyl amines and fatty acids form vesicles at strongly basic and acidic pH ranges which are resistant to the effects of divalent cations up to 0.1 M. Vesicles formed by mixtures of decylamine and decanoic acid (1:1 mole ratio) are relatively permeable to pyranine, a fluorescent anionic dye, but permeability could be reduced by adding 2 mol% of a polycyclic aromatic hydrocarbon such as pyrene. Permeability to the dye was also reduced by increasing the chain length of the amphiphiles. For instance, 1:1 mole ratio mixtures of dodecylamine and dodecanoic acid were able to retain pyranine dye during and following gel filtration. We conclude that primitive cell membranes were likely to be composed of mixtures of amphiphilic and hydrophobic molecules that manifested increased stability over pure fatty acid membranes.     

Prokaryotic diversity in Tuz Lake, a hypersaline environment in Inland Turkey

Tuz Lake is an inland thalassohaline water body located in central Anatolia that contributes to 60% of the total salt production in Turkey per year. The microbiota inhabiting this lake has been studied by FISH, denaturing gradient gel electrophoresis of PCR-amplified fragments of 16S rRNA genes, and 16S rRNA gene clone library analysis. Total cell counts per milliliter (1.38 × 10⁷) were in the range of the values normally found for hypersaline environments. The proportion of Bacteria to Archaea in the community detectable by FISH was one to three. 16S rRNA gene clone libraries indicated that the archaeal assemblage was dominated by members of the Square Haloarchaea of the Walsby group, although some other groups were also found. Bacteria were dominated by members of the Bacteroidetes , including Salinibacter ruber -related phylotypes. Because members of Bacteroidetes are widely present in different hypersaline environments, a phylogenetic analysis of 16S rRNA gene sequences from Bacteroidetes retrieved from these environments was carried out in order to ascertain whether they formed a unique cluster. Sequences retrieved from Tuz Lake and a group of sequences from other hypersaline environments clustered together in a branch that could be considered as the 'halophilic branch' within the Bacteroidetes phylum.     

Sedimentary Residual Soil as a Waste Containment Barrier Material

Compacted soil liners are widely used as a waste containment barrier to control or restrict the migration of contaminant/leachate from the landfill into the environment because of their low hydraulic conductivity, attenuation capacity, resistance to damage or puncture, and cost effectiveness. Compacted soil liners are usually composed of natural inorganic clays or clayey soils. If natural clayey soils are not available, kaolinite or commercially available high swelling clay (bentonite) can be mixed with local soils or sand. This study examines the potential of a sedimentary residual soil as a waste containment barrier in landfills. The laboratory experiments conducted were: grain size distribution, Atterberg limits, swelling tests, compaction, volumetric shrinkage strain, unconfined compression, hydraulic conductivity and cation exchange capacity. The experimental results were compared with those recommended by various researchers for evaluation of its suitability. Test results showed that the soil compacted with modified Proctor compaction effort possesses low hydraulic conductivity (≤1 × 10^?7 cm/s) and adequate strength. In addition, compacted sedimentary residual soil exhibited little volumetric shrinkage strain of below 4% at this compaction effort. Thus, the sedimentary residual soil could be effectively used for the construction of a waste containment barrier in landfills.     

Phosphorylation of Nucleotide Molecules in Hydrothermal Environments

Phosphorylation of AMP into ADP and ATP, that can outrun their hydrolysis, was made possible in a simulated hydrothermal environment when trimetaphosphate was used as the phosphate source. The best yields of phosphorylated products were obtained when the reaction fluids whose temperature was set at about 100 degrees centigrade was injected into the cold environment maintained at 0 degree in a recycling manner. Hydrothermal environments in the primitive ocean could also have served as prebiotic sites for phosphorylation, among others.     

New Data on the Cenozoic History of the Underwater Yamato Rise,Sea of Japan

The Miocene terrestrial plant assemblage (in macro- and microfossils) from the underwater Yamato Rise (Sea of Japan) is examined. A fossil leaf found in the tuffogenic–sedimentary strata is identified as belonging to the beech tree. Data on the Paleogene–Neogene history of the underwater rise are given. Against the background of its general subsidence, positive relief features (volcanoes and their formations) were formed. During the Cenozoic, the entire Sea of Japan depression experienced a submergence.     

An Overview of Coastal Environmental Health Indicators

Discussions of the coastal environment and its health can be improved by more precise use of terms and clarification of the relationship, if any, between the health of ecosystems and the risks to human health. Ecosystem health is seldom defined and, in any case, has to be regarded in different terms than human health. Ecosystem health should embody both the structure and function of the ecosystem. One attractive concept is to define the health of ecosystems in terms of their vigor, organization and resilience. From that perspective, the health of an ecosystem is reduced if it becomes a less vigorous producer of valuable living resources, less diverse and organized, and more susceptible to and slower to recover from stress. Useful indicators of ecosystem health should reflect these properties, but also be supported by understanding of cause and effect relationships generated through research. Significant challenges remain in the integration of indicators in terms of both their interrelationships and holistic significance. There is also a need to develop indicators that are relevant to emerging threats to coastal ecosystems.