蛋白质组学中新蛋白质鉴定的研究方法和策略

当前,基于生物质谱进行蛋白质鉴定的技术已经成为蛋白质组学研究的支撑技术之一.产生的数据主要使用数据库搜索的方法进行处理,这种方法的一大缺陷是不能鉴定数据库中未包含的蛋白质,因此如何充分利用质谱数据对蛋白质组研究的意义很大,而新蛋白质鉴定更是其中一个重要的内容.新蛋白质鉴定是蛋白质鉴定的一个方面,新蛋白质的定义按照序列和功能的已知程度分为3个层次;以蛋白质鉴定的方法为基础,目前新蛋白质鉴定的方法可分为denovo测序和相似序列搜索结合的方法以及搜索EST、基因组等核酸数据库的方法2大类;两者各有利弊.存在各自的问题和相应处理的策略.不同的研究者可以根据具体目的应用和发展不同的鉴定方法,同时新蛋白质的鉴定也将随着蛋白质组学研究的发展而更加完善.     

Searching and Oviposition Behavior of Anagrus atomus L. (Hymenoptera: Mymaridae) on Four Host Plants of Its Host, the Green Leafhopper Empoasca decipiens Paoli (Homoptera: Cicadellidae)

Anagrus atomus L. is an important egg parasitoid of the green leafhopper Empoasca decipiens Paoli. In this study the ability of the parasitoid to locate and parasitize its host was investigated on four host plants, i.e., broad beans (Vicia faba L.), sweet pepper (Capsicum annuum L.), cucumber (Cucumis sativus L.), and French beans (Phaseolus vulgaris L.). For each plant species, the behavior of the parasitoid was observed on E. decipiens infested and noninfested plants. Searching and oviposition behavior were characterized by drumming, probing, and resting. Parasitoids spent significantly less time on non-infested than infested plants, 274.5 and 875.7 s, respectively, and no probing behavior was observed on non-infested plants. Frequency of resting behavior was significantly greater on non-infested than on infested plants. Total foraging time was significantly longer on infested than on non-infested plants, indicating that A. atomus females can efficiently discriminate between leaves with and without infestation. Parasitism of A. atomus was influenced by parasitoid density, with the highest parasitism rate (64.0%) obtained at a density of 10 A. atomus females/0.1356 m² but the number of parasitized eggs per female and the searching efficiency decreased with increasing parasitoid density.     

Classification of doubly wound nucleotide binding topologies using automated loop searches

A classification is presented of doubly wound α/β nucleotide binding topologies, whose binding sites are located in the cleft formed by a topological switch point. In particular, the switch point loop nearest the N-terminus is used to identify specific structural classes of binding protein. This yields seven structurally distinct loop conformations, which are subsequently used as motifs for scanning the Protein Data Bank. The searches, which are effective at identifying functional relationships within a large database of structures, reveal a remarkable and previously unnoticed similarity between the coenzyme binding sites of flavodoxin and tryptophan synthetase, even though there is no sequence or topological similarity between them.     

Host locating behaviour of Leschenaultia exul and Patelloa pachypyga: two tachinid parasitoids of the forest tent caterpillar, Malacosoma disstria

Leschenaultia exul (Townsend) and Patelloa pachypyga (Aldrich & Webber) (Diptera: Tachinidae) are the principal larval parasitoids of the forest tent caterpillar (FTC) Malacosoma disstria (Hübner) (Lepidoptera: Lasiocampidae) in Canada. The response of these two fly species to M. disstria differs depending on the tree species on which the host feeds. In wind tunnel experiments, L. exul spent more time on the side of the tunnel containing volatiles from FTC frass and was attracted to the FTC-aspen poplar (Populus tremuloides Michx.) complex preferentially to the FTC-balsam poplar (Populus balsamifera L.) complex. Field bioassays confirmed that this fly species was preferentially attracted to the herbivore-aspen poplar complex as compared to the herbivore-balsam poplar complex. In field bioassays, P. pachypyga was also attracted preferentially to aspen poplar trees containing FTC larvae, compared to balsam poplar trees with host larvae.     

Foraging patterns of two aphid parasitoids, Lysiphlebus testaceipes and Aphidius colemani on banana

The searching behaviour of two aphid parasitoids, Lysiphlebus testaceipes (Cresson) and Aphidius colemani Viereck (Hymenoptera, Aphidiidae), was analysed. Both species searched banana plants (Musa spec.) infested with the banana aphid Pentalonia nigronervosa Coq. in a different way. L. testaceipes restricted its search to open plant structures and avoided concealed areas. A. colemani partitioned its time spent on the plant between open and concealed areas. This general pattern was independent of aphid colony size and was also observed in the absence of aphids. As a consequence of these searching tactics, the borders of a host patch differed for both parasitoid species. For L. testaceipes, the patch consisted only of aphids feeding on open structures, while it comprised the whole aphid colony for A. colemani. The observed searching patterns resulted in a different exploitation of the aphid colonies.

---

Zusammenfassung Eine Analyse des Suchverhaltens der beiden Blattlausparasitoide Lysiphlebus testaceipes (Cresson) and Aphidius colemani Viereck zeigte, daß beide Arten Bananenpflanzen (Musa spec.), die von der Bananenblattlaus Pentalonia nigronervosa Coq. befallen waren, auf unterschiedliche Weise absuchten. L. testaceipes beschränkte seine Wirtssuche auf frei zugängliche Pflanzenteile und vermied ein Eindringen in geschützte Pflanzenstruckturen. Dagegen hielt sich A. colemani gleichermaßen häufig auf offenen und in geschützten Pflanzenteilen auf. Dieses generelle Suchmuster war unabängig von der Blattlauskoloniegröß und wurde auch beim Fehlen von Wirten beobachtet. Als Konsequenz aus diesem unterschiedlichen Suchverhalten ergaben sich verschiedene Patchgrenzen für beide Parasitoide. Für L. testaceipes bestand der Patch nur aus Blattläusen, die an frei zugänglichen Pflanzenstrukturen saugten, während der Patch für A. colemani alle Blattläuse einschließlich der Tiere umfaßte, die sich in geschützten Pflanzenteilen aufhielten. Damit führte dieses unterschiedliche Suchverhalten beider Parasitoidenarten zu einer unterschiedlichen Ausnutzung der Blattlauskolonien.

     

Measuring host finding capacity and arrestment of natural enemies of the cassava mealybug,Phenacoccus manihoti, in the field

In unifested fields, 80 cassava tips were artificially infested with 0, 1, 2, 4, 8, 16, 32, or 64 third instars, and 20 or 100 eggs of cassava mealybug,Phenacoccus manihoti Matile-Ferrero (Hom., Pseudococcidae). Another 80 uninfested tips served as a control. Tips were arranged in a circle of 28 m diameter, in the centre of which the following exotic natural enemies ofP. manihoti were released:Apoanagyrus (Epidinocarsis) lopezi De Santis andA. diversicornis (Howard) (Hym., Encyrtidae),Hyperaspis notata (Mulsant) andDiomus hennesseyi Fürsch (Col., Coccinellidae), and others. This experiment was repeated six times. During the 4–14 days following release, all experimental tips were inspected at two-hour intervals during each day and the presence of exotic as well as indigenous natural enemies, likeExochomus troberti Mulsant (Col., Coccinellidae), ants and spiders was noted. The experiment was repeated six times measured the aggregative response by the natural enemies to different host densities, achieved through host attractance and arrestment. All exotic natural enemies, except the males ofApoanagyrus spp., were fast attracted to the host colonies. As compared to the control tips, they concentrated on the infested tips about 50-fold for the twoApoanagyrus spp. and 10 to 20-fold for the exotic coccinellids. By contrast, non-coevolved indigenous coccinellids, as well as generalist predators like ants and spiders were attracted to the infested tips only 2 to 5-fold.A. lopezi responded best to different host densities, followed byA. diversicornis and the coccinellids, followed by ants and spiders. None of the parasitoids or predators was particularly attracted to egg masses. These results correspond closely to the known efficiencies of these natural enemies,A. lopezi standing out among all candidates. The results of such aggregation studies are compared with those of life-table studies.     

Identification of anticancer agents based on the thieno[2,3-b]pyridine and 1H-pyrazole molecular scaffolds

Structural similarity search of commercially available analogues of thieno[2,3-b]pyridine and 1H-pyrazole derivatives, known anticancer agents, resulted in 717 hits. These were docked into the phosphoinositide specific-phospholipase C (PLC) binding pocket, the putative target of the compounds, to further focus the selection. Thirteen derivatives of the thieno[2,3-b]pyridines were identified and tested against the NCI60 panel of human tumour cell lines. The most active derivative 1 was most potent against the MDA-MB-435 melanoma cell line with GI₅₀ at 30 nM. Also, it was found that a piperidine moiety is tolerated on the thieno[2,3-b]pyridine scaffold with GI₅₀ = 296 nM (MDA-MB-435) for derivative 10 considerably expanding the structure activity relationship for the series. For the 1H-pyrazoles four derivatives were identified using the in silico approach and additionally ten were synthesised with various substituents on the phenyl moiety to extend the structural activity relationship but only modest anticancer activity was found.     

A game model for the daily activity schedule of the male butterfly

A game model is developed of the daily schedule of matesearching activity by male butterflies, assuming that each male maximizes his expected mating success given a limited total time for mate search. The model predicts that (1) in the early morning, no male is active even though many females are emerging; (2) at a critical time, many males suddenly become active; and (3) the male's maximum activity occurs after the peak female emergence and before the peak capture efficiency. The inverse problem is also analyzed, in which the temporal pattern of capture efficiency is estimated from the knowledge of male activity and female emergence, assuming the evolutionarily stable strategy (ESS) condition. The model is then applied to data from a cabbage white butterfly (Pieris rapae crucivora) population and predicts that (1) females remain unmated for several hours on average after emergence, and (2) the male 's capture efficiency is rather low and increases significantly with time during the morning.     

利用功能反应模型评价球孢白僵菌对东亚小花蝽捕食二斑叶螨的影响

[目的]天敌昆虫和生防菌剂的应用都是害虫生物防治的有效手段,在生产中通过两者联合进行害虫的生物防治具有极强的应用前景和潜在的防控增效作用,然而生防菌对天敌的安全性评价是必不可少的.本研究旨在评估球孢白僵菌Beauveria bassiana与东亚小花蝽Orius sauteri联合应用进行害虫生物防治的可行性.[方法]...