Employing of the Amplified Fragment Length Polymorphism (AFLP) Methodology as an Efficient Population Genetic Tool for Symbiotic Cnidarians

Although the use of molecular markers in population genetics of marine organisms is increasingly employed, methodologic limitations still hampered the research for some taxa, such as symbiotic cnidarians, including scleractinian corals. The development of molecular tools in scleractinian corals' studies is faced with a list of obstacles, such as high cost, labor, time consuming, contamination with foreign DNA, and markers with low resolution. The AFLP (amplified fragment length polymorphism) method, overcomes most of the obstacles listed above except of the difficulty of contamination by algal symbiont DNA. We compared the implication of two pre-DNA extraction treatments to obtain coral DNA free of algal contaminations, termed as CPEM, cell population enriched method, and TTEM, total tissue extraction method. The CPEM process result in pure coral DNA for all samples, but is time consuming, whereas in the TTEM process, approximately 25% to 18% of the samples are still contaminated by algal DNA. However, algal DNA contaminations in the PCR at 2.5 x 10(-1) ng level (approximately 100 algal cells) and below, did not amplify any new AFLP band or peak for neither radioactive nor florescence analyses. Therefore, even the TTEM process may be used because it is faster, easier to handle, and easily employed on a large amount of samples, with minimal contamination artifacts. When correctly employed, both methods are applicable to wide experimental manipulations.     

Demographic aspects of the soft coral Sinularia flexibilis leading to local dominance on coral reefs

We evaluated the role that demography may play in the formation of local aggregations of Sinularia flexibilis (Quoy & Gaimard, 1833), a soft coral that commonly dominates inshore coral reefs of the Great Barrier Reef (GBR), Australia. Two populations on inshore reefs of the Palm Islands were censused once a year for 3 years, starting 10 mo after the extensive bleaching mortality in early 1998. Larger colonies became more prevalent over time; mean colony size increasing by 35%, from 276 cm² in 1998 to 373 cm² in 2000. Growth rates were size dependent, with smaller colonies growing proportionally faster than larger colonies. Change in size relative to initial size indicated an expected mean annual growth of 128 cm² for a 50-cm² colony. Zero growth was predicted at 532±21cm², with colonies larger than this likely to undergo fission or shrink. Forty-three percent of colonies were undergoing fission at any time at both localities. Most new colonies were produced by fission (70%, n=285), with the remainder produced by the recruitment of sexually produced larvae (19%) or by colony translocation (11%). The sexual and asexual recruitment rates were 0.24 and 1.0 recruits m- ² year−¹, respectively. Opportunistic recruitment and rapid growth following disturbances are commonly assumed to be the mechanisms leading soft corals to dominate locally. In this study, these mechanisms operated more slowly than expected, with no net change in population size.     

New records of ahermatypic scleractinian corals from the Kuril Islands

Four species of caryophyllid scleractinians, Caryophylla ambrosia, C. scobinosa, C. alaskensis, and Polymyces montereyensis, were recorded for the first time in the Sea of Okhotsk off the Kuril Islands. These findings extend the range for the species, of which three had previously been considered to be restricted to the tropical and warm Indopacific waters. These data will supplement regional reports on the bottom fauna of the most fertile and extensively commercially exploited continental shelf region of the North Pacific.Original Russian Text Copyright © 2004 by Biologiya Morya, Latypov.     

SPICULES IN SILURIAN TABULATE CORALS FROM CANADA, AND IMPLICATIONS FOR THEIR AFFINITIES

Abstract:  Specimens of Favosites from upper Llandovery strata of Anticosti Island show three types of calcite structures, herein interpreted as spicules, preserved within their calices and on top of the last tabula. This is stratigraphically younger material, some 50 m higher than fossils described two decades earlier, in which calcified polyps, each with 12 retracted tentacles, were noted. These more recently found structures show striking similarities in form and position to point, collaret and capstan spicules found in the soft tissues of modern pipe corals, i.e. the Octocorallia (Alcyonacea). Where preserved in a distinct pattern on top of the calcite tabulae, the spicular sclerites in Favosites occur in a particular sequence. Twelve individual, or sometimes six pairs of, triradiate point spicules have shrunk to a circlet near the middle of the calice (resting on the last, outermost, tabula). Surrounding the point spicules are 3–6 circlets of curved, usually perforated, lenticular collaret spicules; and surrounding these are scattered, much smaller, capstan spicules. The spicules display variability, probably ontogenetic, in their form and relative sizes; and they are more similar in form to calcareous spicules of alcyonacean corals than to those known from calcareous sponges. Structures with 12-fold radial symmetry in Heliolites, originally described by one of us as 'septal florets', consist of elements that are considered comparable with the point spicules found in Favosites . They have been recognized in ten species of Heliolites from Silurian (Wenlock–Ludlow) strata in the Canadian Arctic islands.     

Coral and Fish Biocoenosis: Ecological Cells Gradually Maturing in Complexity, Species Composition and Energy Turnover

Long-term observations on coral units and their coral fishes, as well as observations on the growth of colonies of marked corals in the Gulf of Aqaba (Red Sea), have revealed the relationship between coral dimension and complexity and the ecomorphology and sociobiology of the inhabiting fishes. In this study, coral fishes are identified as species that, following the planktonic interval, settle and remain in a selected coral or its immediate vicinity. Parallel with growth of the refuge, the number of fishes in such a coral–fish association (=ecological cell) increases to a certain asymptote, forming a stable symbiotic entity of fish species, specific in composition and biomass. The initial cell begins with 4–5-year-old branching corals that harbors 3–4 cryptic species of gobies (Paragobiodon and Gobiodon species). This is followed by several stages of coral growth and increase in fish species and biomass, especially of pomacentrids, anthiases, pseudochromids and blennies. The water column or functional space from which the fishes harvest plankton, their main food source, starts at around a 0.2m³ column in the young colonies, and ends with a water column of around 500m³ in the mature ecological cells of large coral knolls. At the mature stage, large cells harbor up to 100 diurnal and nocturnal species of fish, permanently using this refuge and forming an integrated collective. The territorial limits of the piscivorous groupers (Cephalopholis species) generally establish the dimensions of these ecological cells. Preliminary data on standard energy metabolism of the fishes for mature ecological cells reveal that 800kg food is required each year to maintain this biomass. The biological composition and stability of fish populations of such ecological cells will depend on the biological and physical stability of the host coral population.     

Spawning times,reproductive compatibilities and genetic structuring in the Acropora aspera group: evidence for natural hybridization and semi-permeable species boundaries in corals

Species boundaries among five sympatric coral species of the Indo-Pacific Acropora aspera group were examined by a combination of in vitro breeding trials, comparisons of spawning times and DNA sequence analysis of ribosomal DNA internal transcribed spacer (rDNA ITS) and 5.8S regions. The breeding trials showed that reproductive compatibility exists between at least some colonies of all the species pairs tested, suggesting a large potential for natural hybridization and introgression. The Acropora ITS regions exhibited extremely high levels of variability (up to approximately 62% for ITS1, approximately 11% for 5.8S and approximately 43% for ITS2), but most of the variation was shared among four of the five species, A. millepora, A. papillare, A. pulchra and A. spathulata, consistent with extensive introgression. Phylogenetic analyses did not resolve these four species as distinct clusters across a wide biogeographic region stretching from the southern Great Barrier Reef to Papua New Guinea. However, most colonies of the fifth species, A. aspera, constituted a distinct clade in phylogenetic analyses. This is consistent with our observations of a semi-permeable temporal barrier involving differences in spawning times between this and the other four species. Although the majority of colonies of all five species generally spawned within 90 min of each other, in two out of four years, gametes were absent prior to mass spawning episodes from at least some A. aspera colonies. Hence, our data suggest that transient reproductive barriers may be the result of year-to-year variation in the date of spawning and that this difference in spawning time contributes to the genetic structure detected among Acropora species in this group. Occasional leakage through the reproductive barrier was confirmed by the observation of A. aspera xA. pulchra F1 hybrids, identified based on additivity of ITS sequences.     

The past,present, and future of coral heat stress studies

The global loss and degradation of coral reefs, as a result of intensified frequency and severity of bleaching events, is a major concern. Evidence of heat stress affecting corals through loss of symbionts and consequent coral bleaching was first reported in the 1930s. However, it was not until the 1998 major global bleaching event that the urgency for heat stress studies became internationally recognized. Current efforts focus not only on examining the consequences of heat stress on corals but also on finding strategies to potentially improve thermal tolerance and aid coral reefs survival in future climate scenarios. Although initial studies were limited in comparison with modern technological tools, they provided the foundation for many of today's research methods and hypotheses. Technological advancements are providing new research prospects at a rapid pace. Understanding how coral heat stress studies have evolved is important for the critical assessment of their progress. This review summarizes the development of the field to date and assesses avenues for future research.     

Intra-and interspecific variability of fatty acid composition of soft corals

The intra-and interspecific variability of fatty acid (FA) composition of soft corals was examined in the tropical alcyonarian Sarcophyton sp., tropical gorgonian Euplexaura erecta, and boreal alcyonarian Gersemia rubiformis. Characteristic significant differences in the FA composition were found between these species belonging to different taxonomic groups and habitats. We assume that the FA groups 14: 0 + 16: 0 + 18: 3n-6, 16: 2 + 20: 4n-6 + 24: 5n-6, and 18: 1n-7 + 20: 1n-7 + 20: 5n-3 + 24: 6n-3 are characteristic of Sarcophyton sp., E. erecta, and G. rubiformis respectively. There were no significant differences (p > 0.05) between the three soft coral species in the content of oleic, linoleic, and docosahexaenoic acids. The relative content of more than 45% of individual FA did not significantly differ (p > 0.05) between the pairs of species, i.e., intraspecific variations exceeded interspecific ones. The reasons for intraspecific variability of soft coral FA composition are discussed. Control of this variability is needed when using individual FA as chemotaxonomic and food markers.