DNA barcoding of euryglossine bees and the description of new species of Euhesma Michener (Hymenoptera,Colletidae, Euryglossinae)

This paper launches an open access DNA barcoding project “AUSBS” under the Barcoding of Life Datasystems (BOLD). The aims of the project are to help scientists who lack the necessary morphological knowledge to identify known species using molecular markers, to aid native bee specialists with the recognition of species groups that morphologically are difficult to define, and, eventually, to assist with the recognition of new species among known species. Using integrative taxonomy, i.e. morphological comparison to type specimens in Australian museum collections combined with phylogenetic analysis of a fragment of the mitochondrial DNA cytochrome c oxidase subunit I (mtCOI) gene sequences led to the recognition of four new species of Euhesma Michener (Hymenoptera: Colletidae: Euryglossini) collected during intensive surveys in remote Australian conservation areas, which are described. The new species are Euhesma micans, Euhesma lyngouriae, and Euhesma aulaca in a species group associated with Eremophila flowers, and Euhesma albamala in the walkeriana species group.     

Standard survey designs drive bias in the mapping of upland swamp communities

Vegetation maps are critical biodiversity planning instruments, but the classification of vegetation for mapping can be strongly biased by survey design. Standardization of survey design across different vegetation types is therefore increasingly recommended for vegetation mapping programs. However, some vegetation types have complex small‐scale vegetation patterns that are important in characterizing these vegetation types, and standard designs will often not capture these patterns. The objective of this paper was to investigate the magnitude of potential map bias that results from survey design standardization and recommend approaches to deal with this bias. We surveyed upland swamps of the Greater Blue Mountains World Heritage Area Australia using two contrasting survey designs, including the standard 400 m² single quadrat design recommended and used by authorities. We then derived a classification for these swamps and tested the effect of survey design on this classification, species richness and the type of species detected (obligate or facultative swamp species). Species richness and species type were not significantly different among survey techniques. However, more than 40% of swamps clustered differently among survey designs. Thus, one of the 10 derived communities (which is floristically consistent with a previously mapped endangered community) was indistinct, and some individual swamps misclassified using the standard survey design. An effect of landscape position on swamp floristic patterns and a significant trend for high similarity scores among swamps surveyed with multiple small quadrats compared to the standard survey design was also determined. Australian upland swamps are classified at the global scale as shrub‐dominated wetlands, and complex floristic patterns have been recorded in shrub‐dominated wetlands in both northern and southern hemispheres. We therefore advocate either multiple survey designs or different survey standards for upland swamp communities and other vegetation types that have complex floristic patterns at small scales.     

Considering species richness and rarity when selecting optimal survey traps: comparisons of semiochemical baited flight intercept traps for Cerambycidae in eastern North America

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Integrating the intrinsic conformational preferences of noncoded α-amino acids modified at the peptide bond into the noncoded amino acids database

Recently, we reported a database (Noncoded Amino acids Database; http://recerca.upc.edu/imem/index.htm) that was built to compile information about the intrinsic conformational preferences of nonproteinogenic residues determined by quantum mechanical calculations, as well as bibliographic information about their synthesis, physical and spectroscopic characterization, the experimentally established conformational propensities, and applications (Revilla-López et al., J Phys Chem B 2010;114:7413-7422). The database initially contained the information available for α-tetrasubstituted α-amino acids. In this work, we extend NCAD to three families of compounds, which can be used to engineer peptides and proteins incorporating modifications at the--NHCO--peptide bond. Such families are: N-substituted α-amino acids, thio-α-amino acids, and diamines and diacids used to build retropeptides. The conformational preferences of these compounds have been analyzed and described based on the information captured in the database. In addition, we provide an example of the utility of the database and of the compounds it compiles in protein and peptide engineering. Specifically, the symmetry of a sequence engineered to stabilize the 3(10)-helix with respect to the α-helix has been broken without perturbing significantly the secondary structure through targeted replacements using the information contained in the database.     

秦岭宁陕县森林植被碳储量与碳密度特征

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猴源细小病毒血凝和血凝抑制试验的优化与应用

目的优化猴源细小病毒的血凝和血凝抑制（HA/HI）试验条件,以优化的方法对160份2010年～2011年间采集于中国北京地区圈养猴群的血清样品进行猴源细小病毒抗体调查。方法 在不同的缓冲液、缓冲液pH值、猪红细胞浓度、兔血清浓度、阿氏液比例和温度下进行猴源细小病毒的HA/HI试验,选择合适的HA/HI条件。通过优化的HA/HI方法对160份猴血清进行猴源细小病毒抗体检测。结果pH 7.0、0.02 mol/L PBS、0.75%猪红细胞、0.5%兔血清和4℃可作为猴源细小病毒HA/HI试验合适的反应条件,猪血球以1∶1阿氏液抗凝,可保存5～7 d不影响实验结果。猴血清的猴源细小病毒抗体阳性率为58.1%。结论方法优化后稳定性增强、检测时间缩短、准确性提高。细小病毒在我国北京地区圈养猴群中感染比较普遍。     

The value of juvenile animal studies “What have we learned from preclinical juvenile toxicity studies? II”

Recent changes in the regulations from the FDA and EMA have shifted the focus of juvenile toxicity studies more to the safe use of all pharmaceuticals and the absence of label or safety information for the pediatric population. Unlike other regulatory guidance, the need or design of these animal studies is not specified. Ideally these should be decided “case‐by‐case” based on the patient population, pharmacology, existing toxicological and clinical data, dosing regimen, and developing system impact. Following the publishing of a small intercompany survey (Bailey and Mariën, 2009), a more extensive survey was commissioned by the ILSI/HESI DART Technical Committee to clarify what has been learned for the safety assessment for pediatrics. Contributions from 24 companies totaling 241 studies (84% rat and 14% dog) were received. In 12 of 82 programs (15%) were the existing adult preclinical or clinical data considered a sufficient safety prediction for pediatric trials. Clinical/preclinical correlates were observed in 17.2% (rat) and 42.9% (dog) of the studies and a lack of predictability from the pharmacology or the adult toxicity data was seen in 25% of rat and 14.3% of dog studies. Many of the studies were large, lengthy, complex, included parameters that mirrored the adult studies and yielded no new or useful information. We should avoid conducting complex or inappropriate studies and Contract Research Organisations and regulatory agencies have a role in encouraging more targeted designs. Only with appropriate designs can we adequately identify safety or pharmacokinetic issues, suggest clinical endpoints, and contribute to the product label. Birth Defects Res (Part B) 92:273–291, 2011. © 2011 Wiley‐Liss, Inc.     

Change from pre‐settlement to present‐day forest composition reconstructed from early land survey records in eastern Québec,Canada

Questions: What was the tree species composition of forests prior to European settlement at the northern hardwood range limit in eastern Québec, Canada? What role did human activities play in the changes in forest composition in this region? Location: Northern range limit of northern hardwoods in the Lower St. Lawrence region of eastern Québec, Canada. Methods: We used early land survey records (1846–1949) of public lands to reconstruct pre‐settlement forest composition. The data consist of ranked tree species enumerations at points or for segments along surveyed lines, with enumerations of forest cover types and notes concerning disturbances. An original procedure was developed to weigh and combine these differing data types (line versus point observations; taxa versus cover enumerations). Change to present‐day forest composition was evaluated by comparing survey records with forest decadal surveys conducted by the government of Québec over the last 30 years (1980–2009). Results: Pre‐settlement dominance of conifers was strong and uniform across the study area, whereas dominance of maple and birches was patchy. Cedar and spruce were less likely to dominate with increasing altitude, whereas maple displayed the reverse trend. Frequency of disturbances, especially logging and fire, increased greatly after 1900. Comparison of survey records and modern plots showed general increases for maple (mentioned frequency increased by 39%), poplar (36%) and paper birch (31%). Considering only taxa ranked first by surveyors, cedar displayed the largest decrease (19%), whereas poplar (15%) and maple (9%) increased significantly. Conclusions: These changes in forest composition can be principally attributed to clear‐cutting and colonization fire disturbances throughout the 20th century, and mostly reflected the propensity of taxa to expand (maples/aspen) or decline (cedar/spruce) with increased disturbance frequency. Québec's land survey archives provide an additional data source to reconstruct and validate our knowledge of North America's pre‐settlement temperate and sub‐boreal forests.