Genetic Structure of Przewalski’s Rock Partridge (Alectoris magna) Populations in the Longzhong Loess Plateau, China

In this paper, we have analyzed the nuclear DNA of Alectoris magna samples, collected from the Longzhong Loess Plateau. We used allelic variation at eight microsatellite markers to describe the genetic structure of A. magna populations. The primary goal of this study was to examine the population genetic structure and determine the extent of population differentiation among populations of A. magna. The average value of H _E (0.455) was smaller than H _O (0.477), and there was a heterozygote deficit at the MCW135 locus in the Lanzhou population and the Beidao population. The AB063167 locus in each population (except that of Jingyuan) was not in equilibrium (P < 0.05). The Lixian edge population had a lower proportion of genetic diversity than the central geographic populations; the Haiyuan and Jingyuan populations had higher genetic diversity than the central geographic populations. Analysis of population structure revealed clear differentiation among the eight populations of A. magna, suggesting strong isolation of these populations and correspondingly low levels of migration or gene flow. The A. magna populations of Longzhong Loess Plateau are separated into eastern and western populations by a clustering chart. Genetic data indeed suggest that patterns of speciation and population diversification of A. magna in the Longzhong Plateau have been affected by the stability of the climate, natural selection, and human intervention.     

Nitrogen fixation in lichens is important for improved rock weathering

It is known that cyanobacteria in cyanolichens fix nitrogen for their nutrition. However, specific uses of the fixed nitrogen have not been examined. The present study shows experimentally that a mutualistic interaction between a heterotrophic N₂ fixer and lichen fungi in the presence of a carbon source can contribute to enhanced release of organic acids, leading to improved solubilization of the mineral substrate. Three lichen fungi were isolated fromXanthoparmelia mexicana, a foliose lichen, and they were cultured separately or with a heterotrophic N₂ fixer in nutrient broth media in the presence of a mineral substrate. Cells of the N₂-fixing bacteria attached to the mycelial mats of all fungi, forming biofilms. All biofilms showed higher solubilizations of the substrate than cultures of their fungi alone. This finding has bearing on the significance of the origin and existence of N₂-fixing activity in the evolution of lichen symbiosis. Further, our results may explain why there are N₂-fixing photobionts even in the presence of non-fixing photobionts (green algae) in some remarkable lichens such asPlacopsis gelida. Our study sheds doubt on the idea that the establishment of terrestrial eukaryotes was possible only through the association between a fungus and a phototroph.     

THE EVOLUTION OF BODY SHAPE IN RESPONSE TO HABITAT: IS REPRODUCTIVE OUTPUT REDUCED IN FLAT LIZARDS?

Body size and shape are primary determinants of reproductive output in a variety of taxa, so selection favoring specific body sizes and shapes may, in turn, have a direct affect on reproductive output, and ultimately fitness. In reptiles, species that occupy rocky habitats are often flattened, a morphological character that aids locomotion and life on rocks, but which may constrain reproductive output by reducing the amount of abdominal space available to fill with eggs or offspring. Using 20 species of tropical skink from a wide range of habitats, we quantified habitat use, body height, body volume, and reproductive output, to determine whether the evolution of a flattened body was correlated with a reduction in abdominal volume, and, in turn, with reduced reproductive output. In this group of lizards, the occupation of rocky habitats has led (1) to the evolution of a flattened body, and this shift in body shape has (2) caused a reduction in abdominal volume. Despite this reduction in abdominal volume reproductive output was unaffected, as flatter species compensate by being more "full" of eggs. Thus, we demonstrate that morphological adaptation for enhanced performance in specific habitats did not cause a reduction in instantaneous reproductive output.     

Size matters sometimes: wall height and the structure of subtidal benthic invertebrate assemblages in south-eastern Australia and Mediterranean Spain

Aim Variation in the structure of shallow subtidal invertebrate assemblages was examined over three spatial scales; within reef, between reef and between continents. We sought to provide a context from which to examine and interpret ecological processes between continents. In addition, we predicted that variation in pattern would increase as the scale of examination increased. Location Reefs near Wollongong and within Jervis Bay in south‐eastern Australia and Mediterranean reefs on the Costa Brava (Catalonia), north‐eastern Spain. Methods We compared assemblages on vertical rock walls of two heights – short (< 2 m) and tall (> 3 m) in two temperate regions over the same depth range. Specifically we examined the diversity and cover of invertebrates, the cover and biomass of foliose and crustose algae, the size of invertebrate colonies and the biomass of urchins on short and tall walls (n = 3) at each of two locations in each country. Results Foliose algae dominated rock walls in Spain and although invertebrate cover was high, colonies were generally very small. Two urchin species were commonly encountered on rock walls in Spain, Arbacia lixula and Paracentrotus lividus; their biomass was relatively low and did not differ significantly between short and tall walls. These findings contrasted strongly with south‐eastern Australia, where foliose algae were almost completely absent. A single urchin species, Centrostephanus rodgersii occurred with extremely high biomass on short walls, which were dominated by grazer‐resistant crustose calcareous algae. In contrast, the biomass of this urchin was low on tall walls, which were dominated by invertebrates, usually exceeding 95% in cover. Invertebrate colonies were significantly larger on both short and tall walls in south‐eastern Australia relative to the Mediterranean. Findings within a country were consistent between the replicate rock walls and between locations. In contrast to our prediction, however, there was significant variation among walls within a location, but not among locations within a continent. Temporal variation in the structure of these assemblages was not examined, but appears limited. Main conclusions We conclude that submarine topography, i.e. the presence of short or tall rock walls, as a function of rock type and structure, has a marked impact on community structure in south‐eastern Australia, but made little difference to the structure of the assemblage in Mediterranean Spain. The differences in structure we observed between walls of different heights in Australia were correlated with differences in the biomass of urchins and they appear to be major determinants of assemblage structure. Interactions among species are often reported from disparate parts of the globe with little or no reference to the structure of the assemblage of which they are a part; we contend that this will hinder interpretation. Our data are consistent with the organisms in these two regions experiencing distinct selection pressures; for example high levels of urchin grazing activity in south‐eastern Australia, and shading and whiplash associated with an algal canopy in the Mediterranean. It may not be appropriate to contrast processes operating at very large (intercontinental) scales unless context can be established with a clear understanding of ecological pattern.     

Phosphorus and phosphate solubilizing bacteria: Keys for sustainable agriculture

Abstract

Phosphorus (P) is one of the most important minerals required for plant growth occupying a strong position among soil macro nutrients. Soil P deficiency is often fulfilled by phosphate fertilizers. P deficiency in soils is due to less total P contents in the soil and fixation of added P from chemical fertilizers as well as other organic sources like manures. The response of plant under P stress or even when it is present in adequate amount is very mild. The basic constraint in the availability of P is its solubilization as it gets fixed both in acidic and alkaline soil. Soil fixed P can only be solubilized by phosphate solubilizing microorganisms (PSMs).These bacteria released different types of organic acids in the soil which make P soluble and available to plants. The potential of these PSMs to solubilize P varies and mainly depends upon mechanism adopted for solubilization, their molecular genetics as well as their ability to release P in soil. The PSMs, having all the characteristics of phytohormone production, nitrogen fixation, as well as, heavy metal decontamination and creating salt stress tolerance in plants, are quite rare for sustainable agriculture. Application of this environment friendly approach for increasing crop productivity as well as its impact on soil and plant health is discussed in this review which will not only open new avenues of research but also provide fruitful information about phosphate solubilizing microbes for sustainable agriculture development.     

pH Influences the Distribution of Microbial Rock-Weathering Phenotypes in Weathered Shale Environments

Rock varnish is a darkly pigmented coating rich in manganese oxides. Though microbes inhabit varnish deposits, it is unclear whether they are involved in varnish formation. The fungal communities of rock varnish and adjacent rock sites with no visible varnish deposits were examined. Microcolonial fungi were identified at all sampling sites, and were associated with manganese oxides in patches of incipient varnish at non-varnish sites. Fungi were closely related to manganese-oxidizing genera and seventeen isolates oxidized manganese in culture, producing six distinct manganese-oxide morphologies. Our results indicate that microcolonial fungi may play a crucial role in rock varnish formation. Supplemental materials are available for this article. Go to the publisher's online edition of Geomicrobiology Journal to view the free supplemental file.     

Successional phases and species replacements in freshwater rock pools: towards a biological definition of ephemeral systems

1. In temporary aquatic habitats, time is probably the dominant environmental factor affecting community composition, mainly by setting constraints on colonization success and the replacement of taxa over time. The mechanism and effect of a decreasing inundation period on community development, mostly in terms of truncation, are still poorly documented. The permanent and ephemeral components of temporary communities are expected to be differently influenced by the degree of persistence of the habitat. 2. To study the effect of time on invertebrate community assembly and dynamics in a short duration type of temporary aquatic habitat, we monitored 16 ephemeral rock pools which persisted from less than a week to about 1 month at two rock pool sites in semi‐arid south‐eastern Botswana. Data were collected every 2 days during a full inundation cycle. 3. All communities were initially assembled by permanent residents recolonizing the habitat from egg banks and were later joined by actively dispersing ephemeral taxa. Species replacements only occurred in two pools. Concurrent with a decrease in the densities of Branchipodopsis wolfi, population sizes of Leberis sp. and Culicidae (Aedes sp. and Anopheles sp.) increased in these pools. Although it was possible to distinguish two successive phases at one rock pool site, community assembly was generally a gradual process determined by dispersal strategies of the inhabitants. Additional rains after initial filling triggered dispersal by ephemeral taxa, mainly Micronecta youngiana and Hydroglyphus infirmus, and positively influenced colonization success. 4. Decreasing persistence shortens community development down to a critical point below which lack of time eliminates the possibility of species replacement. Based on these findings, we define ephemeral waters as aquatic habitats lacking species replacements. Other temporary water types have a relatively longer persistence, permitting successional replacement of species.     

Three divergent lineages within an Australian marsupial (Petrogale penicillata) suggest multiple major refugia for mesic taxa in southeast Australia

Mesic southeastern Australia represents the continent's ancestral biome and is highly biodiverse, yet its phylogeographic history remains poorly understood. Here, we examine mitochondrial DNA (mtDNA) control region and microsatellite diversity in the brush‐tailed rock‐wallaby (Petrogale penicillata; n = 279 from 31 sites), to assess historic evolutionary and biogeographic processes in southeastern Australia. Our results (mtDNA, microsatellites) confirmed three geographically discrete and genetically divergent lineages within brush‐tailed rock‐wallabies, whose divergence appears to date to the mid‐Pleistocene. These three lineages had been hypothesized previously but data were limited. While the Northern and Central lineages were separated by a known biogeographic barrier (Hunter Valley), the boundary between the Central and Southern lineages was not. We propose that during particularly cool glacial cycles, the high peaks of the Great Dividing Range and the narrow adjacent coastal plain resulted in a more significant north–south barrier for mesic taxa in southeastern Australia than has been previously appreciated. Similarly, located phylogeographic breaks in codistributed species highlight the importance of these regions in shaping the distribution of biodiversity in southeastern Australia and suggest the existence of three major refuge areas during the Pleistocene. Substructuring within the northern lineage also suggests the occurrence of multiple local refugia during some glacial cycles. Within the three major lineages, most brush‐tailed rock‐wallaby populations were locally highly structured, indicating limited dispersal by both sexes. The three identified lineages represent evolutionarily significant units and should be managed to maximize the retention of genetic diversity within this threatened species.     

Taxonomically and functionally diverse microbial communities in deep crystalline rocks of the Fennoscandian shield

Microbial life in the nutrient-limited and low-permeability continental crystalline crust is abundant but remains relatively unexplored. Using high-throughput sequencing to assess the 16S rRNA gene diversity, we found diverse bacterial and archaeal communities along a 2516-m-deep drill hole in continental crystalline crust in Outokumpu, Finland. These communities varied at different sampling depths in response to prevailing lithology and hydrogeochemistry. Further analysis by shotgun metagenomic sequencing revealed variable carbon and nutrient utilization strategies as well as specific functional and physiological adaptations uniquely associated with specific environmental conditions. Altogether, our results show that predominant geological and hydrogeochemical conditions, including the existence and connectivity of fracture systems and the low amounts of available energy, have a key role in controlling microbial ecology and evolution in the nutrient and energy-poor deep crustal biosphere.