Rice functional genomics research in China

Rice functional genomics is a scientific approach that seeks to identify and define the function of rice genes, and uncover when and how genes work together to produce phenotypic traits. Rapid progress in rice genome sequencing has facilitated research in rice functional genomics in China. The Ministry of Science and Technology of China has funded two major rice functional genomics research programmes for building up the infrastructures of the functional genomics study such as developing rice functional genomics tools and resources. The programmes were also aimed at cloning and functional analyses of a number of genes controlling important agronomic traits from rice. National and international collaborations on rice functional genomics study are accelerating rice gene discovery and application.     

保护性耕作对稻田土壤有机质的影响

研究使用常规犁耕-休闲(DTF),常规犁耕-小麦(DTW),保护耕作-休闲(CTF),保护耕作-小麦(CTW)4个处理,评价连续实验10a后保护性耕作对稻作区SOM的影响。结果表明:垄作、免耕和小麦种植的结合是稻作区一种较好的保护性耕作实践。它不仅显著增加SOM在土壤表层的聚集,而且它也通过改变SOM的组成和结构显著影响土壤胡敏酸的光谱和热解特性。相比其他处理,垄作免耕(稻麦)在0～10cm土层拥有最多的SOM含量,但随着土层厚度的增加,这一含量下降的也较为迅速。垄作免耕(稻麦)土壤胡敏酸在波长665nm处的光密度为0.122,465nm处为0.705,而常规平作(中稻)在这两个波长处却分别为0.062和0.321。垄作免耕土壤胡敏酸DTA曲线在360～365℃处放热峰的焓变值比常规平作低,1000～1050cm-1吸收峰常规平作也比垄作免耕强。垄作免耕土壤腐殖质的氧化稳定系数增高,表明长期垄作免耕土壤腐殖酸的缩合度增高,芳构化程度增强。通过保护性耕作和作物实践可以管理稻田土壤,维持充分的SOM积累,缓解土壤有机碳的丢失。     

物种灭绝对不同时间尺度栖息地毁坏响应的空间模拟

人类活动所引起的栖息地毁坏已成为当前物种多样性丧失的最主要的原因之一。空间显含模型相对于空间隐含模型来说,更加接近于现实,因此,通过元胞自动机,模拟了物种多样性对万年、千年、百年时间尺度人类活动所引起的栖息地毁坏的响应。研究结果表明：万年时间尺度上,物种是由强到弱的灭绝;而在千年时间尺度上,物种灭绝的序受集合种群结构的影响较大;在百年时间尺度上。物种由于栖息地毁坏过于剧烈和迅速,来不及作出响应。在栖息地完全毁坏时集体灭绝。因此,物种灭绝序不只是受竞争-侵占均衡机制的影响,还受不同时间尺度（不同速率）栖息地毁坏的影响。以及集合种群结构的影响。     

香港大埔滘天然次生林鸟类群落结构变化

观察了香港最大的大埔滘天然次生林内鸟类群落结构在10a间的变化。用t檢验比较了1993~1995年和2003~2005年间的10种数量最高的鸟类的密度变化。所有的泛生境留鸟种类的密度均呈显著减少。两种树林种类的密度有显著増加,其中一种是本土种,另一种是外来种。香港树林鸟类群落的变化趋势主要受到两个因素的影响,包括缺少有树林种类鸟居住的树林,和外来种的入侵。     

集合种群动态对生境毁坏空间异质性的响应

首次将分形几何(Fractal geometry)与元胞自动机(Cellular automata)相结合,研究了破碎化生境中集合种群的空间分布格局动态,以及集合种群动态对生境毁坏空间异质性的响应。研究发现:(1)各个物种种群在生境中的分布具有很好的分形特征,物种的计盒维数(Box dimension)不仅可以很好地反映种群的空间分布结构,也能很好地反映种群动态。(2)如果将空间因素考虑进来的话,生境毁坏的灭绝债务(Time debt)将大于空间隐含模式所模拟的结果。(3)物种灭绝同时存在强物种灭绝和弱物种灭绝。并且只有在生境随机毁坏下,才与空间隐含的模拟结果比较接近,即强物种中将是最强物种率先灭绝。而在边缘毁坏这种比较集中成块的开发方式下,将是较强的物种灭绝。(4)边缘毁坏相对随机毁坏有利于物种,尤其是弱物种的长期续存。     

Changes of a forest bird community in Hong Kong of China in 10 years

The changes in the bird community structure of the largest natural secondary forest of Hong Kong over 10 years were investigated. Densities of the 10 most abundant species in 1993–1995 and 2003–2005 were compared using t-test. All resident habitat generalists showed significant decline in densities. Two forest specialists showed significant increase in densities: one is native and the other is exotic species. The trend of changes in the forest bird community of Hong Kong is mainly related to the absence of nearby forests that could act as “source” of forest dependent species to colonize the local secondary forests, and the invasion of exotic species.     

Rice bran lipase catalyzed esterification of palm oil fatty acid distillate and glycerol in organic solvent

Rice bran lipase (RBL) was delipidated to enhance its stability in organic solvent and its esterification activity at elevated temperature. The esterification activity of delipidated RBL increased as temperature was increased from 45 to 65°C. The esterification activity of delipidated RBL at 65°C was about 14 times greater than that of the non-delipidated RBL. As temperature was further increased to 75°C, the non-delipidated RBL lost all esterification activity, whereas the delipidated RBL retained approximately 48% of its esterilication activity. The delipidated RBL maintained a relative esterification activity greater than 80% after 16 h of incubation in hexane, whereas the non-delipidated RBL maintained a relative esterification activity of only 50%. A method for production of acylglycerol using delipidated RBL to esterify palm oil fatty acid distillate (PFAD) with glycerol in hexane was successfully developed. The effects of reaction temperatures and type of water removal agents (silica gel and molecular sieve) on the degree of esterification were also examined. A 4 h reaction at 65°C, catalyzed by delipidated RBL and using silica gel as the water removal agent resulted in 53.8% esterification. Thin layer chromatography analysis suggested that the esterified product was primarily comprised of mono-and di-acylglycerols.     

Interference competition between coyotes and raccoons: a test of the mesopredator release hypothesis

Some predator species appear to conform to the mesopredatorrelease hypothesis (MRH), in which larger predators help limitpopulations of smaller predators. This hypothesis has been usedto explain the possible relationship between coyotes, mesopredators,and resultant cascades involving nonpredators. However, relationshipsbetween coyotes and noncanid mesopredators are poorly understood,and predictions from the MRH have rarely been rigorously tested.We monitored sympatric raccoon and coyote populations to assess2 predictions derived from the MRH: coyote predation is an importantcause of mortality in raccoon populations or raccoons avoidareas used by coyotes. Between March 2000 and September 2001,we recorded 3553 locations for 27 radio-collared raccoons and1393 locations for 13 coyotes captured on the Max McGraw WildlifeFoundation in Illinois, USA. No raccoon mortality from coyotepredation was observed during the study, and raccoon survivalwas >0.7 each season. All raccoon 95% home ranges exhibitedoverlap with 95% coyote home ranges in each season. The meanproportion of raccoon locations within 95% coyote home rangesdid not vary by sex but did vary by season. Raccoon overlapof coyote core areas varied considerably among individuals withinseasons, ranging from 0% to 83%. However, 45% of raccoons had<10% overlap with coyote core areas, whereas only 14% ofraccoons exhibited >50% overlap. Mean overlap with core areasdid not vary by season or sex. For those raccoons with homeranges overlapping coyote core areas, mean proportion of observedraccoon locations within coyote core areas was generally greaterthan the mean proportion of random locations. Scent-stationexperiments failed to document raccoon avoidance of specificsites that had been marked with coyote urine. We did not findsupport for a mortality prediction or avoidance prediction tosupport MRH with regard to raccoons and coyotes. These resultssuggest that relationships among mammalian predators may notbe simply dictated by body size, particularly for species outsidethe Canidae.     

Production and characterization of human CTLA4Ig expressed in transgenic rice cell suspension cultures

Human cytotoxic T-lymphocyte antigen 4-immunoglobulin (hCTLA4I g) fusion protein, a novel immunosuppressive agent, was expressed in transgenic rice cell suspension culture and its characteristics and in vitro activities were investigated. The expression vector pMYN409 was constructed to express hCTLA4I g under the control of rice alpha-amylase 3D (RAmy3D) promoter. Transgenic calli were prepared by particle bombardment mediated transformation and were screened for hCTLA4I g expression using ELISA. Under the induction condition by sugar starvation, suspension-cultured rice cells secreted hCTLA4I g into the media up to 31.4 mg/L in flask culture. The rice-derived hCTLA4Ig (hCTLA4IgP) was purified from the culture media with affinity chromatography using protein A and compared with CHO-derived hCTLA4Ig (hCTLA4IgM). Recombinant hCTLA4IgP has molecular weight of approximately 50 kDa on SDS-PAGE under reducing condition, which is a little different from that of hCTLA4IgM probably due to the difference of carbohydrate chain structures. Purified hCTLA4IgP was biologically active and was confirmed to suppress T-cell proliferation.     

Stream Restoration Practices in the Southeastern United States

We collected information on 860 stream restoration projects in four states in the southeastern United States—Georgia, Kentucky, North Carolina, and South Carolina—to gain a better understanding of the practice of stream restoration in this area of high aquatic biodiversity and rapid metropolitan expansion. This was completed as a part of the National River Restoration Science Synthesis, with the larger goal of understanding the state of the science of stream restoration. Stream restoration project density, goals, and monitoring rates varied by state, although southeastern monitoring rates were higher than in other parts of the country. North Carolina had the most projects in the Southeast, of which 36% were monitored. In‐depth phone interviews with project managers from a random subsample of projects provided insights into the process of stream restoration. Land availability was the most common basis for site prioritization, and 49% of projects involved mitigation. Although 51% of projects were associated with a watershed assessment, only 30% of projects were done as part of a larger plan for the watershed. Projects were monitored using physical (77% of monitored projects), chemical (36%), and biological (86%) variables, although many projects were planned and ultimately evaluated based on public opinion. Our results suggest that stream restoration in the southeastern United States is at an exciting point where better incorporation of a watershed perspective into planning and establishment and evaluation of stated, measurable success criteria for every project could lead to more effective projects.