Retention and Degradation of N-Glycoproteins in the Rough Endoplasmic Reticulum

Recent studies have shown that newly synthesized proteins and glycoproteins are submitted to a quality control mechanism in the rough endoplasmic reticulum (ER). In this report we present two models: One model will illustrate a transient retention in rough ER leading to a further degradation of glycoproteins in the cytosol, (soluble alkaline phosphatase expressed in Man-P-Dol deficient CHO cells lines). The second model will illustrate a strict retention of glycoproteins in rough ER without degradation nor recycling through the Golgi (E1, E2 glycoproteins of Hepatitis C virus in stably transfected UHCV-11.4 cells and in infected Hep G2 cells).In both cases, oligomannoside structures are markers of these phenomena, either as free soluble released oligomannosides in the case of degradation, or as N-linked oligomannosides for strict retention in rough ER.     

Imaging and measuring the rituximab-induced changes of mechanical properties in B-lymphoma cells using atomic force microscopy

The topography and mechanical properties of single B-lymphoma cells have been investigated by atomic force microscopy (AFM). With the assistance of microfabricated patterned pillars, the surface topography and ultrastructure of single living B-lymphoma cell were visualized by AFM. The apoptosis of B-lymphoma cells induced by rituximab alone was observed by acridine orange/ethidium bromide (AO/EB) double fluorescent staining. The rituximab-induced changes of mechanical properties in B-lymphoma cells were measured dynamically and the results showed that B-lymphoma cells became dramatically softer after incubation with rituximab. These results can improve our understanding of rituximab’effect and will facilitate the further investigation of the underlying mechanisms.     

Probing the effect of glycosaminoglycan depletion on integrin interactions with collagen I fibrils in the native extracellular matrix environment

Fibrillar collagen–integrin interactions in the extracellular matrix (ECM) regulate a multitude of cellular processes and cell signalling. Collagen I fibrils serve as the molecular scaffolding for connective tissues throughout the human body and are the most abundant protein building blocks in the ECM. The ECM environment is diverse, made up of several ECM proteins, enzymes, and proteoglycans. In particular, glycosaminoglycans (GAGs), anionic polysaccharides that decorate proteoglycans, become depleted in the ECM with natural aging and their mis-regulation has been linked to cancers and other diseases. The impact of GAG depletion in the ECM environment on collagen I protein interactions and on mechanical properties is not well understood. Here, we integrate ELISA protein binding assays with liquid high-resolution atomic force microscopy (AFM) to assess the effects of GAG depletion on the interaction of collagen I fibrils with the integrin α2I domain using separate rat tails. ELISA binding assays demonstrate that α2I preferentially binds to GAG-depleted collagen I fibrils in comparison to native fibrils. By amplitude modulated AFM in air and in solution, we find that GAG-depleted collagen I fibrils retain structural features of the native fibrils, including their characteristic D-banding pattern, a key structural motif. AFM fast force mapping in solution shows that GAG depletion reduces the stiffness of individual fibrils, lowering the indentation modulus by half compared to native fibrils. Together these results shed new light on how GAGs influence collagen I fibril–integrin interactions and may aid in strategies to treat diseases that result from GAG mis-regulation.     

HeLa细胞内DNA的抗酶（DNase I）组分和AFM直接观察

从ＨｅＬａ细胞提取的ＤＮＡ经ＤＮａｓｅＩ酶解后,发现有两种抗酶组分（Ｂ和Ｃ）,凝胶电泳结果显示组分Ｂ的分子大小要超过２００００ｂｐ,而组分Ｃ的分子大小相当于４０￣５０ｂｐ。这两种组分在原子力显微镜下的形态都明显不同于标准的双链ＤＮＡ,其中组分Ｂ与以前观察到的苷－ＤＮＡ变异结构较为相似,组分Ｃ则未见报道,根据其分子的表观宽度和高度推测可能为四链结构,此外,荧光实验还表明这两种组分可与ＥＢ相互作用,使     

结合AFM探测副伤寒沙门氏茵B感染红细胞膜的生物力学特性

采用原子力显微镜和衍射显微术,在纳米精确尺度探测副伤寒沙门氏菌B（Sp B）感染宿主红细胞（RBC）膜微观结构和力学特性,涉及细胞的形变、膜面内剪切模量和弯曲模量。结合这两种单分子测量技术,利用相关的数学模型表述RBC膜对菌体印B的入侵非常敏感。实验结果显示,不同感染期间的SpB寄生菌体,能够引起宿主RBC膜结构改变,形变能力降低,膜剪切模量和弯曲模量显著增加。这些力学特性的变化影响RBC的输氧和循环功能。实验结果表明,印B具有独特的鞭毛调控系统,入侵的毒性菌体寄生蛋白与血影蛋白网络中的运输蛋白有特异结合位点,导致RBC膜骨架网络、波动力学和细胞内、外基质都产生应激反应,这有可能为理解勋曰感染RBC的发病机理和寄生途径提供一些新的实验思路和分析依据。     

High-Resolution Performance of Polycaprolactone Functionalized with Guanidinium Ionic Liquid for Gas Chromatography

This work firstly reported a new polycaprolactone based material functionalized with guanidinium ionic liquid (PCL-GIL) as the stationary phase with high resolution performance for capillary gas chromatography (GC). It is composed of polycaprolactone (PCL) and guanidinium ionic liquid (GIL) with amphiphilic conformation. The PCL-GIL capillary column coated by static method exhibited high column efficiency of 3942 plates/m and moderate polarity. As a result, the PCL-GIL column exhibited high-resolution capability. For a mixture of 27 analytes with a wide ranging polarity and outperformed the PCL-2OH and HP-35 columns, showing its advantageous separation capability for analytes of diverse types. Moreover, the PCL-GIL column showed high resolving capability for various positional isomers and cis-/trans-isomers, including alkylbenzenes, chlorobenzenes, naphthalenes, bromonitrobenzenes, chloronitrobenzenes, benzaldehydes, phenols, alcohols, respectively. In a word, PCL derivatized by GIL units as a new type of stationary phase has a promising future in GC separations.     

Multifaceted applications of nanomaterials in cell engineering and therapy

Nanomaterials with superior physiochemical properties have been rapidly developed and integrated in every aspect of cell engineering and therapy for translating their great promise to clinical success. Here we demonstrate the multifaceted roles played by innovatively-designed nanomaterials in addressing key challenges in cell engineering and therapy such as cell isolation from heterogeneous cell population, cell instruction in vitro to enable desired functionalities, and targeted cell delivery to therapeutic sites for prompting tissue repair. The emerging trends in this interdisciplinary and dynamic field are also highlighted, where the nanomaterial-engineered cells constitute the basis for establishing in vitro disease model; and nanomaterial-based in situ cell engineering are accomplished directly within the native tissue in vivo. We will witness the increasing importance of nanomaterials in revolutionizing the concept and toolset of cell engineering and therapy which will enrich our scientific understanding of diseases and ultimately fulfill the therapeutic demand in clinical medicine.     

Behavior of the ATP grasp domain of biotin carboxylase monomers and dimers studied using molecular dynamics simulations

The enzyme biotin carboxylase (BC) uses adenosine triphosphate (ATP) to carboxylate biotin and is involved in fatty acid synthesis. Structural evidence suggests that the B domain of BC undergoes a large hinge motion of ～45° when binding and releasing substrates. Escherichia coli BC can function as a natural homodimer and as a mutant monomer. Using molecular dynamics simulations, we evaluate the free energy profile along a closure angle of the B domain of E. coli BC for three cases: a monomer without bound Mg(2)ATP, a monomer with bound Mg(2)ATP, and a homodimer with bound Mg(2)ATP in one subunit. The simulation results show that a closed state is the most probable for the monomer with or without bound Mg(2)ATP. For the dimer with Mg(2)ATP in one of its subunits, communication between the two subunits was observed. Specifically, in the dimer, the opening of the subunit without Mg(2)ATP caused the other subunit to open, and hysteresis was observed upon reclosing it. The most stable state of the dimer is one in which the B domain of both subunits is closed; however, the open state for the B domain without Mg(2)ATP is only approximately 2k(B)T higher in free energy than the closed state. A simple diffusion model indicates that the mean times for opening and closing of the B domain in the monomer with and without Mg(2)ATP are much smaller than the overall reaction time, which is on the order of seconds.     

AFM对黄精赞育胶囊优选方处理前后大鼠弱精子超微结构的观察研究

目的:应用原子力显微镜技术实现对大鼠精子超微结构的实时成像,对比观察中药作用前后弱精子超微结构的变化.方法:制作少弱精症大鼠模型;运用非接触模式原子力显微镜技术对比观察正常精子和病理性精子在中药作用前后超微结构的动态变化.结果:获得精子头体、颈部和鞭毛等部位的实时超微结构图像.结论:AFM可直接探测精子头体的各种畸形,实现对精子全貌的观测.通过修复弱精子超微结构的病理形态学缺陷可能是黄精赞育胶囊优选方改善弱精子质量的机制之一.     

城市化区域生态风险驱动力及管控策略——以北京市为例

快速城市化导致城市及周边区域生态风险不断增加,认知城市化区域生态风险,探究其变化的驱动因素,提出行之有效的风险管控策略,对城市化区域生态环境与社会经济协调发展具有重要意义。以北京市为例,基于生态系统服务对生态风险进行了定量表征,分析了城市化因素对生态风险的驱动作用,探究了生态风险管控策略。研究结果表明：不透水地表扩张、经济增长、人口增长均对生态风险有显著的驱动作用,其中不透水地表扩张的驱动作用占主导地位。经济增长和人口增长通过影响不透水地表率间接作用于生态风险,在2005年时,人口密度对生态风险的驱动作用大于GDP强度,在2010年及之后,GDP强度对生态风险的驱动作用则变得比人口密度的驱动作用更大。北京市的生态风险管控策略为：在不透水地表率介于40%—70%的区域降低不透水地表率和实施土地利用及景观格局优化;不透水地表率大于70%的区域应防止不透水地表进一步扩张;不透水地表率低于40%的区域需通过提升生态系统质量、强化风险防范、降低风险暴露等途径来管控风险。此外,应通过提高海淀、昌平、通州、顺义等辖区的人口和经济城市化集约水平来降低生态风险。本研究阐明了城市化对区域生态风险的驱动作用...