The significance of partial migration for food web and ecosystem dynamics

Migration is ubiquitous and can strongly shape food webs and ecosystems. Less familiar, however, is that the majority of life cycle, seasonal and diel migrations in nature are partial migrations: only a fraction of the population migrates while the other individuals remain in their resident ecosystem. Here, we demonstrate different impacts of partial migration rendering it fundamental to our understanding of the significance of migration for food web and ecosystem dynamics. First, partial migration affects the spatiotemporal distribution of individuals and the food web and ecosystem-level processes they drive differently than expected under full migration. Second, whether an individual migrates or not is regularly correlated with morphological, physiological, and/or behavioural traits that shape its food-web and ecosystem-level impacts. Third, food web and ecosystem dynamics can drive the fraction of the population migrating, enabling the potential for feedbacks between the causes and consequences of migration within and across ecosystems. These impacts, individually and in combination, can yield unintuitive effects of migration and drive the dynamics, diversity and functions of ecosystems. By presenting the first full integration of partial migration and trophic (meta-)community and (meta-)ecosystem ecology, we provide a roadmap for studying how migration affects and is affected by ecosystem dynamics in a changing world.     

The Role of Protons in the Auxin-induced Root Growth Inhibition - A Critical Reexamination

According to the acid growth theory of auxin action, it has been proposed that auxin decreases root growth by inhibiting the proton pump, thus causing an alkalinization of the apoplast. This paper critically tests this hypothesis with corn (Zea mays L.) roots. It was found that: i) the pH-growth curve for roots exhibits a broad optimum ranging from pH 4.5 to 9. ii) Any acid-induced growth is of very short duration, iii) The low sensitivity of root growth to external pH is independent of both the pump activity and the buffer capacity of the bathing solution, iv) Neither incubation in acidic buffer nor stimulation of the proton pump reverts the auxin-induced root growth inhibition. It is concluded that the auxin-induced root growth inhibition is not mediated by cell wall alkalinization.     

Selective incorporation of 5-hydroxytryptophan blocks long range electron transfer in oxalate decarboxylase

Oxalate decarboxylase from Bacillus subtilis is a binuclear Mn-dependent acid stress response enzyme that converts the mono-anion of oxalic acid into formate and carbon dioxide in a redox neutral unimolecular disproportionation reaction. A π-stacked tryptophan dimer, W96 and W274, at the interface between two monomer subunits facilitates long-range electron transfer between the two Mn ions and plays an important role in the catalytic mechanism. Substitution of W96 with the unnatural amino acid 5-hydroxytryptophan leads to a persistent EPR signal which can be traced back to the neutral radical of 5-hydroxytryptophan with its hydroxyl proton removed. 5-Hydroxytryptophan acts as a hole sink preventing the formation of Mn(III) at the N-terminal active site and strongly suppresses enzymatic activity. The lower boundary of the standard reduction potential for the active site Mn(II)/Mn(III) couple can therefore be estimated as 740 mV against the normal hydrogen electrode at pH 4, the pH of maximum catalytic efficiency. Our results support the catalytic importance of long-range electron transfer in oxalate decarboxylase while at the same time highlighting the utility of unnatural amino acid incorporation and specifically the use of 5-hydroxytryptophan as an energetic sink for hole hopping to probe electron transfer in redox proteins.     

海南坡鹿围栏种群动态与食物资源关系的初步分析

1986年海南省大田国家级自然保护区在境内设立面积为95公顷的围栏,将86只海南坡鹿分隔成一个孤立的种群。经过3个繁殖年度,种群发展到158只。随着种群数量的增加,坡鹿采食植物的种类密度、高度和频率均明显减少,而坡鹿不食的植物种类则明显增加。种群出生率和年度增长率随种群数量增加而逐年降低,而种群死亡率却有增加趋势。种群密度过高产生的拥挤效应和食物资源不足是造成种群出生率和年度增长率下降的主要原因。本文还就保护区应采取的管理措施,提出了相应的建议。     

Modeling an immune response to influenza A virus infection in alveolar epithelial cells

Influenza A viruses (IAV) have been the cause of several influenza pandemics in history and are a significant threat for the next global pandemic. Hospitalized influenza patients often have excess interferon production and a dysregulated immune response to the IAV infection. Obtaining a better understanding of the mechanisms of IAV infection that induce these harmful effects would help drug developers and health professionals create more effective treatments for IAV infection and improve patient outcomes. IAV stimulates viral sensors and receptors expressed by alveolar epithelial cells, like RIG-I and toll-like receptor 3 (TLR3). These two pathways coordinate with one another to induce expression of type III interferons to combat the infection. Presented here is a queuing theory-based model of these pathways that was designed to analyze the timing and amount of interferons produced in response to IAV single stranded RNA and double-stranded RNA detection. The model accurately represents biological data showing the necessary coordination of the RIG-I and TLR3 pathways for effective interferon production. This model can serve as the framework for future studies of IAV infection and identify new targets for potential treatments.     

Temporal pattern of resource use and variation in diets of individual grasshoppers (Orthoptera: Acrididae)

Patterns of resource fidelity, switching, and variation in individual diet were examined in the polyphagous grasshopper Taeniopoda equesforaging in experimental cages over an 11-day period. Ten novel dicots were provided in the cages, but grasshoppers fed primarily on kale (Brassica oleraceavar. acephala),lobelia (Lobelia erinus),pansy (Viola x wittrockiana),and dry bermuda grass (Cynodon dactylon).Grasshoppers showed significant fidelity to a single plant within a meal but tended to eat less of the same plant in the next meal and, in the case of pansy, on the next day. Grasshoppers switched nonrandomly, suggesting that compensatory feeding on complementary resources may have occurred. There was no evidence that behavioral interactions among individuals increased switching rate or lowered fidelity. Overall patterns of resource use varied significantly among grasshoppers during the study, despite frequent switching among resources and a significant tendency to aggregate while feeding. All individuals were polyphagous but differed in relative consumption of available plants. The results suggest that individual grasshoppers express different feeding patterns that are consistent over time and that variation in diet among individual observed in the field may be more than simple sampling error.     

Piping plover chick ecology following landscape-level disturbance

Population declines of disturbance-dependent species due to suppression of natural disturbances are realized across ecosystems. The piping plover (Charadrius melodus; plover), a disturbance-dependent and conservation-reliant shorebird that nests on sandy beaches and barrier islands on the Atlantic Coast, was listed under the United States Endangered Species Act in 1986. In 2012, Hurricane Sandy landed on Fire and Westhampton islands, barrier island nesting sites for plovers in New York, USA. Hurricane Sandy was a natural disturbance in this system, creating abundant nesting habitat. The number of chicks produced by a pair, or a population, is a direct measure of reproductive output, and gaining a better understanding of productivity and chick behavior following large-scale habitat creation may improve plover habitat management and potentially species persistence. We evaluated the effects of landscape features on habitat selection, behavior, and survival of plover broods using logistic regression, generalized linear mixed effects models, and survival models. Plover broods selected flatter sites with less dense vegetation than available at random. Chick foraging rates were highest in moist substrates and were lower in areas of higher nesting plover density. Chick survival was greater for broods that hatched earlier in the breeding season and increased as chicks aged. Generally, providing access to sites with flatter, moist substrates will likely result in higher quality brood rearing habitat on the landscape. Ultimately, vegetation removal and habitat management may be needed to reduce plover nesting density and ensure sufficient habitat, which may in turn improve plover chick survival. Moreover, sustaining natural landscape disturbances such as those resulting from storms, and not taking actions to prevent hurricane-created overwash, will allow these landscape features to persist.     

Game theory-based stakeholder analysis of marine nature reserves and its case studies in Guangdong Province,China

Marine nature reserves (MNRs) play an important role in biodiversity conservation and ecosystem restoration, which are valuable for marine resource protection in China. Many stakeholders are involved in MNRs. The interactions between MNR managers and other stakeholders affect the effectiveness of MNR management. This work divided MNR stakeholders into three categories and applied the analytical hierarchy process (AHP) to identify the key stakeholders. The game model was set up to analyze the strategies of MNR staff and stakeholders. The situation of key stakeholders and management was studied in two MNRs in Guangdong Province through field research and questionnaires. The results showed that fishermen were the main stakeholders in the two cases. The strategies adopted by MNR staff to improve the efficiency of law enforcement and decrease the probability of illegal activities of fishermen are to increase penalties, improve the arrest rate of illegal activities, and reduce the cost of law enforcement per patrol. We suggested that the fishermen’s negative impacts could be minimized by establishing a market management system to reduce illegal earnings, a record-keeping system to share additional benefits only with the fishermen who comply with the law, and an association mechanism in the coastal province to control illegal fishing across provincial boundaries. Identifying key stakeholders and analyzing their relationships could be helpful to find out the best strategy for different MNRs. Building a community of shared interests among various stakeholders could be a promising way to resolve conflicts and improve management effectiveness in MNRs.