Rescue of Fragile X Syndrome Neurons by DNA Methylation Editing of the FMR1 Gene

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TALEN-Induced Double-Strand Break Repair of CTG Trinucleotide Repeats

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Details of T-DNA structural organization from a transgenic Petunia population exhibiting co-suppression

Analysis of Agrobacterium-transferred DNA (T-DNA) revealed strong correlations between transgene structures and floral pigmentation patterns from chalcone synthase (chs) co-suppression among 47 Petunia transformants. Presented here are the full details of T-DNA structural organization in that population. Sixteen transformants (34%) carried one T-DNA copy while 31 (66%) carried 106 complete and partial T-DNA elements in 54 linkage groups. Thirty linkage groups contained multiple T-DNA copies; 15 of these contained only contiguously repeated copies, 8 contained only dispersed copies and 7 contained both. Right-border inverted repeats were three times more frequent than left-border inverted or direct repeats. Large fragments of binary-vector sequences were linked to the T-DNA in seven plants.     

Evolution of the Group 1 late embryogenesis abundant (Lea) genes: analysis of the Lea B19 gene family in barley

The highly conserved Group 1 late embryogenesis abundant (Lea) genes are present in the genome of most plants as a gene family. Family members are conserved along the entire coding region, especially within the extremely hydrophilic internal 20 amino acid motif, which may be repeated. Cloning of Lea Group 1 genes from barley resulted in the characterization of four family members named B19.1, B19.1b, B19.3 and B19.4 after the presence of this motif 1, 1, 3 and 4 times in each gene, respectively. We present here the results of comparative and evolutionary analyses of the barley Group 1 Lea gene family (B19). The most important findings resulting from this work are (1) the tandem clustering of B19.3 and B19.4, (2) the spatial conservation of putative regulatory elements between the four B19 gene promoters, (3) the determination of the relative age of the gene family members and (4) the chimeric nature of B19.3 and B19.4, reflecting a cross-over or gene-conversion event in their common ancestor. We also show evidence for the presence of one or two additional expressed B19 genes in the barley genome. Based on our results, we present a model for the evolution of the family in barley, including the 20 amino acid motif. Comparisons of the relatedness between the barley family and all other known Group 1 Lea genes using maximum parsimony (PAUP) analysis provide evidence for the time of divergence between the barley genes containing the internal motif as a single copy and as a repeat. The PAUP analyses also provide evidence for independent duplications of Group 1 genes containing the internal motif as a repeat in both monocots and dicots.     

Identification of the border between fibronectin type III homologous repeats 2 and 3 of the neural cell adhesion molecule L1 as a neurite outgrowth promoting and signal transducing domain

To determine the domains of the neural cell adhesion molecule L1 involved in neurite outgrowth, we have generated monoclonal antibodies against L1 and investigated their effects on neurite outgrowth of small cerebellar neurons in culture. When the 10 antibodies were coated as substrate, only antibody 557.B6, which recognizes an epitope represented by a synthetic peptide comprising amino acids 818 to 832 at the border between the fibronectin type III homologous repeats 2 and 3, was as efficacious as L1 in promoting neurite outgrowth, increasing intracellular levels of Ca²⁺, and stimulating the turnover of inositol phosphates. These findings suggest that neurite outgrowth and changes in these second messengers are correlated. Such a correlation was confirmed by the ability of Ca²⁺ channel antagonists and pertussis toxin to inhibit neurite outgrowth on L1 and antibody 557.B6. These observations indicate for the first time a distinct site on cell surface-bound-L1 as a prominent signal-transducing domain through which the recognition events appear to be funneled to trigger neurite outgrowth, increase turnover of inositol phosphates, and elevate intracellular levels of Ca²⁺. © 1995 John Wiley & Sons, Inc.     

Agents that target telomerase and telomeres

Telomeres are guanine-rich regions that are located at the ends of chromosomes and are essential for preventing aberrant recombination and protecting against exonucleolytic DNA degradation. Telomeres are maintained by telomerase, an RNA-dependent DNA polymerase. Because telomerase is known to be expressed in tumor cells, which concurrently have short telomeres, and not in most somatic cells, which usually have long telomeres, telomerase and telomere structures have been recently proposed as attractive targets for the discovery of new anticancer agents. The most exciting current strategies are aimed at specifically designing new drugs that target telomerase or telomeres and new models have been formulated to study the biological effects of inhibitors of telomerase and telomeres both in vitro and in vivo.     

Simple sequence repeats provide a direct estimate of pollen-mediated gene dispersal in the tropical tree Gliricidia sepium

An understanding of the processes that determine the observed patterns of genetic variation in natural plant populations is an important factor in the management of biodiversity. Pollen-mediated gene dispersal is recognized as a major determinant of population genetic structure. Here, the utility of simple sequence repeat (SSR) analysis was investigated for the measurement of pollen-mediated gene transfer by paternity exclusion in a restricted, fragmented and endangered population of the insect-pollinated tropical leguminous tree Gliricidia sepium located in Guatemala. Data at a single SSR locus, which revealed six allelic variants, were employed to generate minimum distance curves of pollen dispersal. Combined data from all six alleles indicated that a minimum of 1.8% of transfer events occurred over a distance of greater than 75 m. However, this value represents an underestimate because of the exclusion approach employed for analysis. Considering the four rarest alleles in the population only (combined frequency = 0.196), which provides a less biased indicator of gene transfer, a minimum of 6.1% of pollen movements could be attributed to greater than 75 m. One extreme example of gene transfer of over 275 m was recorded. Estimates of pollen transfer suggest a homogenizing effect on genetic structure over the spatial scale of the study population and provide an important indicator for the genetic management of natural and exotic stands of G. sepium . This study provides the first example of SSR analysis being employed to estimate directly pollen movement in a natural stand of any tree species.     

The repeated sequences (incB) preceding the protein E gene of plasmid mini-F are essential for replication

Summary At the XhoI site (45.08F) of plasmid mini-F a deletion of 649 bp was generated employing exonuclease Bal31. By this deletion nucleotide sequences functioning as origin II and the four 19 bp direct repeats constituting the incB region in front of the E protein gene were removed from the plasmid. Analysis of proteins radioactively labelled in Escherichia coli mini-cells indicated that all mini-F encoded proteins are expressed. However, the plasmid carrying the deletion was not capable of replicating from the primary origin (origin I, 42.6F). Recently a smaller deletion at the XhoI site (45.08F) of about 300 bp, removing only the region functioning as origin II and replicating from origin I, was described by Tanimoto and Iino (1984, 1985). The data presented suggest that the incB repeats are essential for the initiation of replication from origin I, and possibly also from origin II, and seem not to be engaged in the autoregulation of E protein expression.     

IS-like element IS8 in RP4 plasmid and its involvement in cointegration

The structure of the cointegrate plasmids formed by fusion of RP4 and the tumour-inducing plasmid (pTi) of Agrobacterium tumefaciens was analyzed. In all of the nine independently isolated pTi: :RP4 cointegrates, the integration occurred at the same site on the RP4 genome. Moreover, a 1.2 Md (1750 bp) RP4 sequence (IS8) was directly repeated at both junction sites of the two replicons. The insertion of RP4 generated deletions, starting from the IS8sequence and extending into the Ti part of the cointegrate. Dissociation of the cointegrates resulted in wild-type RP4 and Ti-plasmids with the IS8 sequence inserted at the original RP4 insertion site. The processes of integration and dissociation and the genetic properties of the cointegrates indicate that the IS8 sequence has unique characteristics defining a new insertion sequence.     

Hypervariable DNA Fingerprint Loci in Microseris pygmaea (Asteraceae,Lactuceae)

Oligo-GATA containing probes reveal DNA fingerprinting patterns in DNA of Microseris pygmaea after restriction enzyme digestion. There are only a few major restriction fragments. These are longer than 2 kb, and they differ completely among plants from different populations, among most members of a single local inbreeding population, and even among some parent and offspring plants. In the F2 of an interpopulation hybrid, major fingerprint bands could be assigned to 2 unlinked loci by 3: 1 and 1: 2: 1 segregations respectively, one further band segregated roughly 1: 1, one band appeared irregularly. The hypervariability of the GATA-fingerprint loci contrasts with a low variability of other genetic markers in M. pygmaea and with a more complex but less variable GATA-fingerprint pattern in related species.