Individual and sex‐related patterns of prolonged flights during both day and night by great reed warblers crossing the Mediterranean Sea and Sahara Desert

A wide variety of the barrier crossing strategies exist among migrating songbirds, ranging from strict nocturnal flights to non‐stop flights over a few days. We evaluate barrier crossing strategies in a nocturnally migrating songbird crossing the Mediterranean Sea and the Sahara Desert, the great reed warbler, exploring variation between the sexes and within individuals. We used data from 31 year‐round light‐level geolocators tracks from 26 individuals (13 males and 13 females), with four individuals tracked for 2–3.5 consecutive years. Almost all individuals (25 of 26) prolonged their flights into the day at least on one occasion. The mean duration of these prolonged flights was 19.9 h and did not differ between sexes or seasons. Fifteen birds performed non‐stop flights during more than one full day and night (≥ 24 h; mean = 31.9 h; max = 55 h) in autumn and/or spring, but these flights were generally too short to cross an entire barrier (such as the Sahara Desert) in one non‐stop flight. Patterns of prolonged flights showed considerable within‐individual variation in females between seasons (autumn versus spring) and in both males and females between years, suggesting high individual flexibility in migration strategy. Significantly more males than females performed prolonged flights during autumn migration, but not spring, possibly reflecting sex‐specific carry‐over effects. We conclude that great reed warblers have the ability to conduct prolonged continuous flights for up to several nights and days, which potentially would allow them to cross the Sahara Desert in one non‐stop flight. However, they typically use a mixed strategy of several nocturnal flights with intermittent stopovers in combination with 1–3 prolonged flights. Prolonged flights covered less than half (44%) of the total flight time across the barriers, and the diurnal parts of the flights covered only 18% of this time.     

Repeated measures random forests (RMRF): Identifying factors associated with nocturnal hypoglycemia

Nocturnal hypoglycemia is a common phenomenon among patients with diabetes and can lead to a broad range of adverse events and complications. Identifying factors associated with hypoglycemia can improve glucose control and patient care. We propose a repeated measures random forest (RMRF) algorithm that can handle nonlinear relationships and interactions and the correlated responses from patients evaluated over several nights. Simulation results show that our proposed algorithm captures the informative variable more often than naïvely assuming independence. RMRF also outperforms standard random forest and extremely randomized trees algorithms. We demonstrate scenarios where RMRF attains greater prediction accuracy than generalized linear models. We apply the RMRF algorithm to analyze a diabetes study with 2524 nights from 127 patients with type 1 diabetes. We find that nocturnal hypoglycemia is associated with HbA1c, bedtime blood glucose (BG), insulin on board, time system activated, exercise intensity, and daytime hypoglycemia. The RMRF can accurately classify nights at high risk of nocturnal hypoglycemia.     

Facilitating Establishment of Advance Regeneration of Pterocarpus santalinus L.—An Endangered Tree Species from India

Red sanders (Pterocarpus santalinus L.) is an endangered and endemic tropical tree species from India in need of restoration. This study evaluated options for improving establishment of its advance regeneration in degraded forests. Using randomized complete block design, the effect of silvicultural treatments involving prescribed fire, in combination with disking, singling, disking with singling, and control (no treatment) on survival and growth of advanced regeneration were evaluated for a period of 2 years. Results indicate that the treatments served to ameliorate microsite conditions resulting in better survival and growth. Seedlings with fewer coppice shoots, treatments with a singling component, and treatments with disking component showed better survival and growth. The number and height of other neighboring seedlings and trees also influenced seedling establishment. Seedlings showed significantly higher survival results in the prescribed fire with disking (disking with prescribed burn [DPB]: 96%) and prescribed fires with disking and singling (singling plus disking with prescribed burn [SDPB]: 94%) treatments. Similarly, tall seedlings and those with larger root collar diameters accrued significantly higher volume growth in DPB (87%) and SDPB (97%) treatments. Although seedlings showed similar increments in DPB and SDPB treatments, better survival due to singling indicated the latter as the best option. In dense regeneration areas, preferential treatment of the taller and larger stump‐sized seedlings and, in limited regeneration areas that of smaller seedlings, may yield better results. Additionally, removal of competing vegetation and canopy opening may also help establishment of young regeneration. The results of this study have applications for restoration of endangered species in other tropical dry deciduous ecosystems worldwide.     

A large proportion of North American net ecosystem production is offset by emissions from harvested products,river/stream evasion,and biomass burning

Diagnostic carbon cycle models produce estimates of net ecosystem production (NEP, the balance of net primary production and heterotrophic respiration) by integrating information from (i) satellite‐based observations of land surface vegetation characteristics; (ii) distributed meteorological data; and (iii) eddy covariance flux tower observations of net ecosystem exchange (NEE) (used in model parameterization). However, a full bottom‐up accounting of NEE (the vertical carbon flux) that is suitable for integration with atmosphere‐based inversion modeling also includes emissions from decomposition/respiration of harvested forest and agricultural products, CO₂ evasion from streams and rivers, and biomass burning. Here, we produce a daily time step NEE for North America for the year 2004 that includes NEP as well as the additional emissions. This NEE product was run in the forward mode through the CarbonTracker inversion setup to evaluate its consistency with CO₂ concentration observations. The year 2004 was climatologically favorable for NEP over North America and the continental total was estimated at 1730 ± 370 TgC yr^?1 (a carbon sink). Harvested product emissions (316 ± 80 TgC yr^?1), river/stream evasion (158 ± 50 TgC yr^?1), and fire emissions (142 ± 45 TgC yr^?1) counteracted a large proportion (35%) of the NEP sink. Geographic areas with strong carbon sinks included Midwest US croplands, and forested regions of the Northeast, Southeast, and Pacific Northwest. The forward mode run with CarbonTracker produced good agreement between observed and simulated wintertime CO₂ concentrations aggregated over eight measurement sites around North America, but overestimates of summertime concentrations that suggested an underestimation of summertime carbon uptake. As terrestrial NEP is the dominant offset to fossil fuel emission over North America, a good understanding of its spatial and temporal variation – as well as the fate of the carbon it sequesters ─ is needed for a comprehensive view of the carbon cycle.     

THE BENTHIC MACROINVERTEBRATE FAUNA OF A SOUTH AFRICAN MOUNTAIN STREAM AND ITS RESPONSE TO FIRE

Summary

The effects of a late-summer prescribed burn on the temperature and benthic macroinvertebrate fauna of a south-western Cape mountain stream were investigated over a period of 12 months. Temperature and discharge regimes appear well-defined and relatively predictable from year to year. As in other mediterranean-type ecosystems, seasonal changes in the structure of the invertebrate community and the relative abundance of different feeding groups appear to be associated primarily with changes in the physical environment. Distinctive summer and winter communities were identified, with chironomids dominating the fauna in summer and simuliids dominant in winter. Although the riparian vegetation was only slightly damaged by the fire, a heavy, aseasonal leaf-fall occurred shortly afterwards. The canopy remained sparse for approximately four months. Stream temperature in the post-burn year was not demonstrably affected by increased exposure to solar radiation, however, probably because the canopy remained open during the winter months. The fire appeared to have little effect on the invertebrate fauna. Apart from five rare elements of the biota, all species recorded in the pre-burn year were present in the post-burn year and in similar densities. It is concluded that the riparian vegetation is of major importance in maintaining the integrity of the stream environment.     

Gopher Tortoise Demographic Responses to a Novel Disturbance Regime

The long-term viability of gopher tortoise (Gopherus polyphemus) populations is jeopardized by increased urbanization and habitat degradation owing to fire suppression. Because the species' remaining natural habitats in the southeastern United States exist within a mosaic of anthropogenic land uses, it is important to understand demographic responses to contrasting land uses and habitat management regimes. We examined differences in demographic parameters among fire-suppressed sandhill, restored sandhill, and former sandhill (i.e., ruderal) land use-land cover (LULC) types at Archbold Biological Station in south-central Florida, USA. Using Program MARK, we estimated population size, and sex-specific and LULC-specific survivorship based on 6 years of mark-recapture data. We also analyzed individual growth trajectories and clutch sizes to determine whether growth rates or reproductive output differed among LULC types. Tortoises in an open, ruderal field occurred at a higher density (7.79/ha) than in adjacent restored (1.43/ha) or fire-suppressed (0.40/ha) sandhill. Despite this higher density, both adult survivorship and body size were significantly higher in the ruderal field. Furthermore, the larger female body size in the ruderal field likely contributed to increased annual survivorship and slightly larger average clutch sizes. We did not detect offsetting negative demographic effects; in particular, we did not find significant biological or statistical differences in body condition, asymptotic body size, or growth rate among the 3 LULC types. Our results suggest that anthropogenic, grass-dominated land-cover types may be important components of the habitat mosaic currently available to this at-risk species. © 2019 The Wildlife Society.     

Repeated Mating and Female Fecundity in the Simultaneously Hermaphroditic Land Snail Arianta arbustorum

Summary

To evaluate the influence of repeated mating on female fecundity in the simultaneously hermaphroditic, self-incompatible land snail Arianta arbus-torum, the number and size of clutches, egg size and hatching success of individuals from 3 populations were determined under conditions of isolation and grouping during one breeding season in a field cage experiment. Only adult snails which had mated and oviposited in the preceding year were used.

Sperm storage enabled isolated individuals to continue with the production of fertilized eggs. Snails kept singly or in groups differed neither in number of clutches laid nor in egg size. But isolated snails laid smaller clutches than did grouped snails. As a result isolated snails produced fewer eggs per breeding season. Hatching success varied greatly between populations and rearing conditions. In general, isolated snails had fewer hatchlings than grouped snails, indicating that individuals prevented from remating suffered a reduced fitness.     

Why Are There So Many Diverse Replication Machineries?

The replicon model has initiated a major research line in molecular biology: the study of DNA replication mechanisms. Until now, the majority of studies have focused on a limited set of model organisms, mainly from Bacteria or Opisthokont eukaryotes (human, yeasts) and a few viral systems. However, molecular evolutionists have shown that the living world is more complex and diverse than believed when the operon model was proposed. Comparison of DNA replication proteins in the three domains, Archaea, Bacteria, and Eukarya, have surprisingly revealed the existence of two distinct sets of non-homologous cellular DNA replication proteins, one in Bacteria and the other in Archaea and Eukarya, suggesting that the last universal common ancestor possibly still had an RNA genome. A major puzzle is the presence in eukaryotes of the unfaithful DNA polymerase alpha (Pol α) to prime Okazaki fragments. Interestingly, Pol α is specifically involved in telomere biosynthesis, and its absence in Archaea correlates with the absence of telomeres. The recent discovery of telomere-like GC quartets in eukaryotic replication origins suggests a link between Pol α and the overall organization of the eukaryotic chromosome. As previously proposed by Takemura, Pol α might have originated from a mobile element of viral origin that played a critical role in the emergence of the complex eukaryotic genomes. Notably, most large DNA viruses encode DNA replication proteins very divergent from their cellular counterparts. The diversity of viral replication machineries compared to cellular ones suggests that DNA and DNA replication mechanisms first originated and diversified in the ancient virosphere, possibly explaining why they are so many different types of replication machinerie.     

Personal experience and reputation interact in human decisions to help reciprocally

There is ample evidence that human cooperative behaviour towards other individuals is often conditioned on information about previous interactions. This information derives both from personal experience (direct reciprocity) and from experience of others (i.e. reputation; indirect reciprocity). Direct and indirect reciprocity have been studied separately, but humans often have access to both types of information. Here, we experimentally investigate information use in a repeated helping game. When acting as donor, subjects can condition their decisions to help recipients with both types of information at a small cost to access such information. We find that information from direct interactions weighs more heavily in decisions to help, and participants tend to react less forgivingly to negative personal experience than to negative reputation. Moreover, effects of personal experience and reputation interact in decisions to help. If a recipient''s reputation is positive, the personal experience of the donor has a weak effect on the decision to help, and vice versa. Yet if the two types of information indicate conflicting signatures of helpfulness, most decisions to help follow personal experience. To understand the roles of direct and indirect reciprocity in human cooperation, they should be studied in concert, not in isolation.     

Repeated Batch Production of Theanine by Coupled Fermentation with Energy Transfer Using Membrane-Enclosed γ-Glutamylmethylamide Synthetase and Dried Yeast Cells

γ-Glutamylmethylamide synthetase and dried baker’s yeast cells were enclosed together in a dialysis membrane tube to produce theanine repeatedly by coupled fermentation with energy transfer. The membrane-enclosed enzyme preparation (M-EEP) formed approximately 600 mM theanine from glutamic acid and ethylamine at a 100% conversion rate. M-EEP maintained its productivity of theanine during six consecutive reactions in a mixture containing NAD⁺.