Evaluation of four-dimensional cone beam computed tomography ventilation images acquired with two different linear accelerators at various gantry speeds using a deformable lung phantom

We evaluated four-dimensional cone beam computed tomography (4D-CBCT) ventilation images (VI_CBCT) acquired with two different linear accelerator systems at various gantry speeds using a deformable lung phantom.The 4D-CT and 4D-CBCT scans were performed using a computed tomography (CT) scanner, an X-ray volume imaging system (Elekta XVI) mounted in Versa HD, and an On-Board Imager (OBI) system mounted in TrueBeam. Intensity-based deformable image registration (DIR) was performed between peak-exhale and peak-inhale images. VI_CBCT- and 4D-CT-based ventilation images (VI_CT) were derived by DIR using two metrics: one based on the Jacobian determinant and one on changes in the Hounsfield unit (HU). Three different DIR regularization values (λ) were used for VI_CBCT. Correlations between the VI_CBCT and VI_CT values were evaluated using voxel-wise Spearman’s rank correlation coefficient (r).In case of both metrics, the Jacobian-based VI_CBCT with a gantry speed of 0.6 deg/sec in Versa HD showed the highest correlation for all the gantry speeds (e.g., λ = 0.05 and r = 0.68). Thus, the r value of the Jacobian-based VI_CBCT was greater or equal to that of the HU-based VI_CBCT. In addition, the ventilation accuracy of VI_CBCT increased at low gantry speeds.Thus, the image quality of VI_CBCT was affected by the change in gantry speed in both the imaging systems. Additionally, DIR regularization considerably influenced VI_CBCT in both the imaging systems. Our results have the potential to assist in designing CBCT protocols, incorporating VI_CBCT imaging into the functional avoidance planning process.     

基于图像配准分析物种进化关系的新方法

图像配准是图像处理的一个重要技术,可用于分析两幅图像之间的相似度。本文提出了一种基于图像配准分析物种进化关系的新方法:首先利用一阶马尔可夫链方法计算不同基因组序列的寡聚核苷酸转移概率矩阵;然后将转移概率矩阵转换为彩色图像矩阵,并绘制物种两两之间彩色图像矩阵的联合直方图;最后分析联合直方图点集的分布情况,引入直方图点集的散度公式,将其作为相似性测度的标准,从而鉴定物种亲缘关系的远近。100种细菌全基因组的计算结果表明,相较于单基因法或基于基因组寡聚核苷酸频率组分差异信息的方法,本文提出的新方法具有更高的准确度和分辨力,它不仅能够很好地分辨科以下的分类单元,而且对科以上的分类单元同样具有较好的区分效果。该方法有望发展成为物种鉴定及系统发育推断的有效手段。     

医学图像融合配准技术

图像融合技术在现代医学中扮演着极其重要的角色,是现代医学图像技术研究的重点。图像融合技术中,图像的配准又是其中的重点、难点和热点。本文按照图像变换特性对图像配准进行了分类,对每个类别的不同配准方法(特征点的获取、图像配准的变换等)进行介绍。但是,图像配准是一个尚处在发展阶段的学科,实现配准的精确化、快速化、自动化仍需要进一步的努力。     

Effects of radiograph projection parameter uncertainty on TKA kinematics from model-image registration

Model-image registration techniques have been used extensively for the measurement of joint kinematics in vivo. These techniques typically utilize an explicit measurement of X-ray projection parameters (principal distance, principal point), which is easily done for prospective studies. However, there is vast opportunity to derive useful information from previously collected clinical radiographic films where the projection parameters are unknown. The purpose of this study was to determine variation in measured knee arthroplasty kinematics when the X-ray projection parameters were unknown, but bounded. Based on the clinical radiographic protocol, a nominal principal point was chosen and eight additional points ±2 and ±5 cm in the horizontal and vertical directions were defined. Tibiofemoral kinematics were determined for all nine projection parameter sets for a series of 10 lateral radiographs. In addition, the principal distance was varied ±15 cm and tibiofemoral kinematics were determined for these two projection sets. Measured joint kinematics varied less than 0.6° and 0.4 mm for ±2 cm variations in principal point location, and 0.7° and 0.6 mm for ±5 cm variations in principal point location. Measured joint kinematics varied less than 0.6° and 0.7 mm for ±15 cm variations in principal distance. Variation in X-ray principal point and principal distance over clinically bounded ranges has a small effect on knee arthroplasty kinematics computed from model-image registration with high-quality clinical radiographs.     

环境减灾卫星多光谱CCD影像自动几何精纠正与正射校正系统

我国环境减灾光学卫星(HJ)多光谱CCD影像由于具有高时空分辨率、大幅宽等优势,能够提供同一区域不同生长阶段的植被信息,是提取具有生态学意义土地覆盖及开展植被生理生态参量反演的重要数据源之一。然而,目前该数据产品的几何定位不准确及山区地形畸变误差使其难以满足应用需求。高定位精度是遥感影像信息提取、参数反演与应用分析的前提,遥感影像的几何精纠正与正射校正是遥感数据预处理面临的首要问题。在分析国内外卫星影像自动化处理系统研究现状的基础上,结合HJ CCD影像幅宽大的特点,构建了HJ CCD影像的自动几何精纠正与正射校正处理系统。与目前商业软件相比,自动几何精纠正与正射校正处理系统采用了自动化的控制点搜索与过滤方法,能有效提高控制点选取的效率与精度。同时,结合DEM数据,系统自动拟合卫星飞行路径并纠正由偏离星下观测导致的山体位移。系统应用结果表明,自动几何精纠正和正射校正系统能够有效的提高处理效率,节省人力和时间成本。该系统已被成功应用于全国生态十年(2000—2010年)变化遥感调查与评估专项土地覆盖遥感监测的环境减灾卫星多光谱遥感影像预处理工作。     

Results of automatic image registration are dependent on initial manual registration

Measurement of static alignment of articulating joints is of clinical benefit and can be determined using image-based registration. We propose a method that could potentially improve the outcome of image-based registration by using initial manual registration. Magnetic resonance images of two wrist specimens were acquired in the relaxed position and during simulated grasp. Transformations were determined from voxel-based image registration between the two volumes. The volumes were manually aligned to match as closely as possible before auto-registration, from which standard transformations were obtained. Then, translation/rotation perturbations were applied to the manual registration to obtain altered initial positions, from which altered auto-registration transformations were obtained. Models of the radiolunate joint were also constructed from the images to simulate joint contact mechanics. We compared the sensitivity of transformations (translations and rotations) and contact mechanics to altering the initial registration condition from the defined standard. We observed that with increasing perturbation, transformation errors appeared to increase and values for contact force and contact area appeared to decrease. Based on these preliminary findings, it appears that the final registration outcome is sensitive to the initial registration.     

Landmark registering waveform data improves the ability to predict performance measures

The purpose of this study was to investigate the benefit of landmark registration when applied to waveform data. We compared the ability of data reduced from time-normalised and landmark registered vertical ground reaction force (vGRF) waveforms captured during maximal countermovement jumps (CMJ) of 53 active male subjects to predict jump height. vGRF waveforms were landmark registered using different landmarks resulting in four registration conditions: (i) end of the eccentric phase, (ii) adding maximum centre of mass (CoM) power, (iii) adding minimum CoM power, (iv) adding minimum vGRF. In addition to the four registration conditions, the non-registered vGRF and concentric phase only were time-normalised and used in subsequent analysis. Analysis of characterising phases was performed to reduce the vGRF data to features that captured the behaviour of each waveform. These features were extracted from each condition’s vGRF waveform, time-domain (time taken to complete the movement), and warping functions (generated from landmark registration). The identified features were used as predictor features to fit a step-wise multilinear regression to jump height. Features generated from the best performing registration condition were able to predict jump height to a similar extent as the concentric phase (86–87%), while all registration conditions could explain jump height to a greater extent than time-normalisation alone (65%). This suggests waveform variability was reduced as phases of the CMJ were aligned. However, findings suggest that over-registration can occur when applying landmark registration. Overall, landmark registration can improve prediction power to performance measures as waveform data can be reduced to more appropriate performance related features.     

Using Sculptor and Situs for simultaneous assembly of atomic components into low-resolution shapes

We describe an integrated software system called Sculptor that combines visualization capabilities with molecular modeling algorithms for the analysis of multi-scale data sets. Sculptor features extensive special purpose visualization techniques that are based on modern GPU programming and are capable of representing complex molecular assemblies in real-time. The integration of graphics and modeling offers several advantages. The user interface not only eases the usually steep learning curve of pure algorithmic techniques, but it also permits instant analysis and post-processing of results, as well as the integration of results from external software. Here, we implemented an interactive peak-selection strategy that enables the user to explore a preliminary score landscape generated by the colors tool of Situs. The interactive placement of components, one at a time, is advantageous for low-resolution or ambiguously shaped maps, which are sometimes difficult to interpret by the fully automatic peak selection of colors. For the subsequent refinement of the preliminary models resulting from both interactive and automatic peak selection, we have implemented a novel simultaneous multi-body docking in Sculptor and Situs that softly enforces shape complementarities between components using the normalization of the cross-correlation coefficient. The proposed techniques are freely available in Situs version 2.6 and Sculptor version 2.0.     

Natural Occurrence ofChondrostereum purpureumin Relation to Its Use as a Biological Control Agent in Canadian Forests

The incidence of natural fructification ofChondrostereum purpureumwas estimated quantitatively on southern Vancouver Island during two winter seasons in randomly located 1000-m²plots and compared with potential added fructification that might occur as a result of using the fungus to control stump-sprouting of hardwood weeds in young forest stands. Fructification was surveyed in forests as well as in urban or agricultural areas by estimating the surface areas of woody substrates covered with basidiocarps. In addition to random plots, estimates were made also in locations where the fungus would be expected to occur (woodpiles, silvicultural thinnings, and killed trees). Basidiocarps were found throughout the area in various types of forest cover as well as in urban or agricultural situations. The amount of added fructification through the use of the fungus as a biological control agent was determined from inoculated plots as well as from calculated stump-surface areas developed from published stand-density data. Added fructification was multiplied by a factor representing the maximum biological control frequency in order to compare added fructification with natural fructification values. From the various calculations, it was determined that the added fructification ofC. purpureumis of the same order of magnitude as naturally occurring levels or even lower. In addition, there is a distinct geographical separation between predominantly forestry and predominantly settled areas where fruit and ornamental trees are cultivated. Accordingly, it was concluded that using the fungus as a biological control agent in forestry is not likely to pose a significant threat to fruit growing and commercial forests.     

Non-rigid registration of serial dedicated breast CT,longitudinal dedicated breast CT and PET/CT images using the diffeomorphic demons method

Rationale and objectivesDedicated breast CT and PET/CT scanners provide detailed 3D anatomical and functional imaging data sets and are currently being investigated for applications in breast cancer management such as diagnosis, monitoring response to therapy and radiation therapy planning. Our objective was to evaluate the performance of the diffeomorphic demons (DD) non-rigid image registration method to spatially align 3D serial (pre- and post-contrast) dedicated breast computed tomography (CT), and longitudinally-acquired dedicated 3D breast CT and positron emission tomography (PET)/CT images.MethodsThe algorithmic parameters of the DD method were optimized for the alignment of dedicated breast CT images using training data and fixed. The performance of the method for image alignment was quantitatively evaluated using three separate data sets; (1) serial breast CT pre- and post-contrast images of 20 women, (2) breast CT images of 20 women acquired before and after repositioning the subject on the scanner, and (3) dedicated breast PET/CT images of 7 women undergoing neo-adjuvant chemotherapy acquired pre-treatment and after 1 cycle of therapy.ResultsThe DD registration method outperformed no registration (p < 0.001) and conventional affine registration (p ≤ 0.002) for serial and longitudinal breast CT and PET/CT image alignment. In spite of the large size of the imaging data, the computational cost of the DD method was found to be reasonable (3–5 min).ConclusionsCo-registration of dedicated breast CT and PET/CT images can be performed rapidly and reliably using the DD method. This is the first study evaluating the DD registration method for the alignment of dedicated breast CT and PET/CT images.