Disentangling the historical routes to community assembly in the global epicentre of biodiversity

Aim

The exceptional turnover in biota with elevation and number of species coexisting at any elevation makes tropical mountains hotspots of biodiversity. However, understanding the historical processes through which species arising in geographical isolation (i.e. allopatry) assemble along the same mountain slope (i.e. sympatry) remains a major challenge. Multiple models have been proposed including (1) the sorting of already elevationally divergent species, (2) the displacement of elevation upon secondary contact, potentially followed by convergence, or (3) elevational conservatism, in which ancestral elevational ranges are retained. However, the relative contribution of these processes to generating patterns of elevational overlap and turnover is unknown.

Location

Tropical mountains of Central- and South-America.

Time Period

The last 12 myr.

Major Taxa Studied

Birds.

Methods

We collate a dataset of 165 avian sister pairs containing estimates of phylogenetic age, geographical and regional elevational range overlap. We develop a framework based on continuous-time Markov models to infer the relative frequency of different historical pathways in explaining present-day overlap and turnover of sympatric species along elevational gradients.

Results

We show that turnover of closely related bird species across elevation can predominantly be explained by displacement of elevation ranges upon contact (81%) rather than elevational divergence in allopatry (19%). In contrast, overlap along elevation gradients is primarily (88%) explained by conservatism of elevational ranges rather than displacement followed by elevational expansion (12%).

Main Conclusions

Bird communities across elevation gradients are assembled through a mix of processes, including the sorting, displacement and conservatism of species elevation ranges. The dominant role of conservatism in explaining co-occurrence of species on mountain slopes rejects more complex scenarios requiring displacement followed by expansion. The ability of closely related species to coexist without elevational divergence provides a direct and faster pathway to sympatry and helps explain the exceptional species richness of tropical mountains.     

Promises and limits of an agency perspective in evolutionary developmental biology

An agent-based perspective in the study of complex systems is well established in diverse disciplines, yet is only beginning to be applied to evolutionary developmental biology. In this essay, we begin by defining agency and associated terminology formally. We then explore the assumptions and predictions of an agency perspective, apply these to select processes and key concept areas relevant to practitioners of evolutionary developmental biology, and consider the potential epistemic roles that an agency perspective might play in evo devo. Throughout, we discuss evidence supportive of agential dynamics in biological systems relevant to evo devo and explore where agency thinking may enrich the explanatory reach of research efforts in evolutionary developmental biology.     

Trophic ecology of juvenile bull sharks (Carcharhinus leucas) in the Coyote estuary,Costa Rica

Bull shark (Carcharhinus leucas) is a near-threatened elasmobranch species capable of moving between the fresh and salty waters of tropical and subtropical coastal areas, for which we still lack important ecological information. During their first years of life, bull sharks use estuarine systems as nursery areas, making them highly susceptible to environmental and anthropogenic pressures. We studied the trophic ecology of juveniles found in the Coyote estuary, a potential nursery area in Costa Rica, to understand the potential impact of further bull shark declines and gain knowledge that could aid in their conservation. We analysed the trophic ecology of juvenile bull sharks [81–103 cm total length (TL)] in the Coyote estuary, Costa Rica, using stable isotopes of δ¹⁵N and δ¹³C. Since one problem using this technique in juveniles is the confounding effect of the maternal signature, we sampled different tissues (muscle and plasma), verified the status of the shark's umbilical scar and identified the size at which the isotope signature is a result of the animal's current diet. The isotopic values of the muscle tissue reflected the maternal isotopic signature. In contrast, plasma values reflected the diet of juvenile bull sharks >95 cm TL and with a closed umbilical scar. Juvenile bull sharks fed primarily on teleost fishes of the order Anguilliformes and Siluriformes, and have a high trophic position (≥4.0) in the Coyote estuary. Our findings suggest that this estuary is an important feeding site for juvenile bull sharks of the Pacific of Costa Rica. Thus, the protection of essential habitats such as the Coyote estuary will benefit not only bull shark conservation, but also the conservation of an array of fish species that also use this habitat as a rookery, many of which are of commercial interest.     

闽南渔场主要游泳动物时空生态位特征及其影响因素

根据2019—2021年在闽南渔场进行的秋季、冬季、春季和夏季四个航次定点底拖网调查资料,利用相对重要性指数、种群聚集强度、生态位宽度、生态位重叠及冗余分析对主要游泳动物时空生态位特征及其影响因素进行研究。结果表明,(1)调查海域共鉴定出游泳动物214种,主要优势种有18种,优势种存在明显的季节更替现象;夏季优势种的丛生指数和平均拥挤度较高,春季较低;(2)在时间维度上,须赤虾(Metapenaeposis barbata De Haan)生态位宽度最大(0.99), 7组种对时间生态位重叠值等于1.00;在空间维度上,带鱼(Trachurus japonicus Temminck&Schlegel)生态位宽度最大(2.57),空间生态位重叠值超过0.6的种类占71.3%;在时空维度上,带鱼生态位宽度最大(2.45),鹿斑仰口鲾(Leiognathus ruconius Hamilton)与赤鼻棱鳀(Thrissa kammalensis Bleeker)时空生态位重叠值最大(0.94);(3)冗余分析表明,底层温度和底层盐度是影响闽南渔场主要游泳动物时空生态位特征的重要环境因...     

北美水貂和欧亚水獭在东北地区的分布与生态位重叠

作为入侵物种,北美水貂(Neovison vison)在欧洲引起了一系列生态问题,侵占了欧亚水獭(Lutra lutra)的生态空间,其入侵性对当地生物多样性和生态系统构成了严重威胁。水貂引入我国东北地区已有70多年的历史,然而国内对其野外种群却鲜有研究。掌握水貂种群的入侵范围、入侵影响因素以及与本地具有相似生态位的欧亚水獭之间的竞争关系,对水貂的入侵管理和东北地区的生物多样性保护具有重要意义。本研究利用实地调查和文献资料获取的分布信息,通过集合模型识别水貂和水獭的潜在分布区,评估水貂对水獭在地理空间上的入侵风险,并通过主成分分析(principal component analysis,PCA)评估其生态位重叠和影响因素。结果表明:(1)我国东北地区水貂的潜在分布区面积为61,944.57 km²,水獭的潜在分布区面积为83,590.94 km²,两者重叠区域面积为50,544.21 km²,占水獭潜在分布区面积的60.47%;(2)从各省分布情况来看,黑龙江省水獭受水貂入侵的风险最高,潜在分布区重叠的比例达到78.9...     

镇海棘螈产卵场微生境选择

镇海棘螈(Echinotriton chinhaiensis)为国家一级重点保护野生动物,其种群面临着生境退化及丧失的重要威胁。产卵是决定镇海棘螈种群数量增长的关键环节之一,了解其产卵选择的微生境偏好可以更有针对性地保护该物种。本研究旨在确定影响镇海棘螈产卵场微生境选择的关键环境变量,同时为该物种的产卵生境保护、改造和重建提供科学基础。本文于2021年3-5月(繁殖期)在浙江省宁波市北仑区林场对镇海棘螈产卵位点(n=105)与非产卵位点(n=70)处的18个微生境变量进行调查。采用拟合优度卡方检验判断3种无序分类变量的差异性,并利用生境喜好系数对生境选择性进行分析。采用二元逻辑斯蒂回归模型对15个数值型变量进行分析,确定影响镇海棘螈产卵微生境选择的关键变量。结果显示镇海棘螈繁殖期间对产卵场微生境有明显偏好,通常产卵于朝向水坑、落叶层较厚(5.19±0.18 cm)、坡度较陡(18.64°±1.18°)和土壤含水量较低(33.51%±1.87%)的土壤基质上。此外,在大型遮蔽物中,镇海棘螈偏好选择体积较小的石块和乔木(2,994.63±316.17 cm³)作为遮蔽...     

Genome-wide RAD sequencing data suggest predominant role of vicariance in Sino-Japanese disjunction of the monotypic genus Conandron (Gesneriaceae)

Disjunct distribution is a key issue in biogeography and ecology, but it is often difficult to determine the relative roles of dispersal vs. vicariance in disjunctions. We studied the phylogeographic pattern of the monotypic Conandron ramondioides (Gesneriaceae), which shows Sino-Japanese disjunctions, with ddRAD sequencing based on a comprehensive sampling of 11 populations from mainland China, Taiwan Island, and Japan. We found a very high degree of genetic differentiation among these three regions, with very limited gene flow and a clear Isolation by Distance pattern. Mainland China and Japan clades diverged first from a widespread ancestral population in the middle Miocene, followed by a later divergence between mainland China and Taiwan Island clades in the early Pliocene. Three current groups have survived in various glacial refugia during the Last Glacial Maximum, and experienced contraction and/or bottlenecks since their divergence during Quaternary glacial cycles, with strong niche divergence between mainland China + Japan and Taiwan Island ranges. Thus, we verified a predominant role of vicariance in the current disjunction of the monotypic genus Conandron. The sharp phylogenetic separation, ecological niche divergence among these three groups, and the great number of private alleles in all populations sampled indicated a considerable time of independent evolution, and suggests the need for a taxonomic survey to detect potentially overlooked taxa.     

Climatic niche divergence explains angiosperm diversification across clades in China

Diversification rates are critically important for understanding patterns of species richness among clades. However, the effects of climatic niche width on plant diversification rates remain to be elucidated. Based on the phylogenetic, climatic, and distributional information of angiosperms in China, a total of 26 906 species from 182 families were included in this study. We aimed to test relationships between diversification rate and climatic niche width and climatic niche width related variables (including climatic niche divergence, climatic niche position, geographic extent, and climatic niche evolutionary rate) using phylogenetic methods. We found that climatic niche divergence had the largest unique contribution to the diversification rate, while the unique effects of climatic niche width, climatic niche position, geographic extent, and climatic niche evolutionary rate on the diversification rate were negligible. We also observed that the relationship between diversification rate and climatic niche divergence was significantly stronger than the null assumption (artefactual relationship between diversification and clade-level climatic niche width by sampling more species). Our study supports the hypothesis that wider family climatic niche widths explain faster diversification rates through a higher climatic niche divergence rather than through higher geographic extent, higher climatic niche evolutionary rate, or separated climatic niche position. Hence, the results provide a potential explanation for large-scale diversity patterns within families of plants.     

ORGANIZATION OF PREDATOR-PREY COMMUNITIES AS AN EVOLUTIONARY GAME

We consider a simple predator-prey model of coevolution. By allowing coevolution both within and between trophic levels the model breaks the traditional dichotomy between coevolution among competitors and coevolution between a prey and its predator. By allowing the diversity of prey and predator species to emerge as a property of the evolutionarily stable strategies (ESS), the model breaks another constraint of most approaches to coevolution that consider as fixed the number of coevolving species. The number of species comprising the ESS is influenced by a parameter that determines the predator's niche breadth. Depending upon the parameter's value the ESS may contain: 1) one prey and one predator species, 2) two prey and one predator, 3) two prey and two predators, 4) three prey and two predators, 5) three prey and three predators, etc. Evolutionarily, these different ESSs all emerge from the same model. Ecologically, however, these ESSs result in very different patterns of community organization. In some communities the predator species are ecologically keystone in that their removal results in extinctions among the prey species. In others, the removal of a predator species has no significant impact on the prey community. These varied ecological roles for the predator species contrasts sharply with the essential evolutionary role of the predators in promoting prey species diversity. The ghost of predation past in which a predator's insignificant ecological role obscures its essential evolutionary role may be a frequent property of communities of predator and prey.     

The evolutionary consequences of niche construction: a theoretical investigation using two-locus theory

This paper addresses the joint evolution of environment-altering (niche constructing) traits, and traits whose fitness depends on alterable sources of natural selection in environments. We explore the evolutionary consequences of this niche construction using a two-locus population genetic model. The novel conclusions are that niche construction can (1) cause evolutionary inertia and momentum, (2) lead to the fixation of otherwise deleterious alleles, (3) support stable polymorphisms where none are expected, (4) eliminate what would otherwise be stable polymorphisms, and (5) influence disequilibrium. The results suggest that the changes that organisms bring about in their niche can themselves be an important source of natural selection pressures, and imply that evolution may proceed in cycles of selection and niche construction.