CERAMIUM INKYUII SP. NOV. (CERAMIACEAE,RHODOPHYTA) FROM KOREA: A NEW SPECIES BASED ON MORPHOLOGICAL AND MOLECULAR EVIDENCE1

Ceramium inkyuii sp. nov. is newly described based on samples collected from the east coast of Korea and compared with similar species such as C. paniculatum and C. tenerrimum. The new species is characterized by pseudo‐dichotomously branched thalli with a twist in the upper part, a single row of spines on the abaxial side, strongly inrolled apices, and the presence of gland cells. In contrast, C. paniculatum has alternate branches and lacks gland cells, and C. tenerrimum is spineless and also lacks gland cells. Ceramium inkyuii was observed to be an annual species producing tetrasporangia in the spring to summer and cystocarps in the fall. Plastid‐encoded rbcL and nuclear small subunit (SSU) rDNA sequences were determined in four samples of C. inkyuii from different locations and six samples of four putative relatives. All four C. inkyuii replicates from three different locations had identical sequences of each gene, and the interspecific sequence divergences were enough to warrant its natural entity. The phylogenies of the rbcL and SSU rDNA sequences also indicate the monophyly of C. inkyuii. The spinous C. inkyuii was more closely related to the spineless C. tenerrimum than to the spinous C. paniculatum.     

PHYLOGENY OF THE GENUS COLEOCHAETE (COLEOCHAETALES,CHAROPHYTA) AND RELATED TAXA INFERRED BY ANALYSIS OF THE CHLOROPLAST GENE rbcL1

The genus Coleochaete Bréb. is considered to be a key taxon in the evolution of green algae and embryophytes (land plants), but only a few of the approximately 15 species have been studied with molecular phylogenetic methods. We report here the sequences of the gene rbcL from six new cultures of Coleochaete and two of Chaetosphaeridium Klebahn. These sequences were combined with 32 additional sequences, and phylogenetic analyses were performed with maximum likelihood, distance optimality, and parsimony methods. Important subgroups within Coleochaete include two primary lineages, one marked by fully corticated zygotes and the other by naked or weakly corticated zygotes. In the first lineage there is a subclade with tightly joined filaments and distinctive (“T‐shaped”) cell division, an assemblage of strains that resembles the endophytic species Coleochaete nitellarum Jost, and a clade with loosely joined filaments and “Y‐shaped” cell divisions. Consistent with recent multigene phylogenies, these analyses support the monophyly of the Coleochaetales, place the Charales as the sister taxon to land plants, and indicate that Chaetosphaeridium is far more closely related to Coleochaete than to Mesostigma Lauterborn.     

Taxonomic features of the red alga Meristotheca coacta (Solieriaceae, Gigartinales)

Vegetative and reproductive structures of the little‐known red alga, Meristotheca coacta Okamura (Solieriaceae, Gigartinales) were described on the basis of specimens collected from three localities in southern Japan, including an island close to the lectotype locality. Meristotheca coacta was shown to be a strongly supported monophyletic clade in our rbcL analyses. The taxonomic features of this species were reassessed. This species is characterized as follows: (i) the thalli consist of relatively thick (300–1400 μm from the uppermost to basal regions), elastic and rose‐red blades; (ii) the blades are irregularly lobed and branched into variously shaped segments with undulate and crispate margins; (iii) tetrasporangial initials are laterally attached to their parental cells and the lateral pit‐connections remain in mature tetrasporangia; (iv) gametophytes are dioecious; (v) carpogonial branches are three‐celled (occasionally two‐ or four‐celled); (vi) a darkly staining auxiliary cell complex is present and recognizable prior to diploidization; and (vii) cystocarps are produced along (or near) the margins of the blades and on the marginal proliferations and lack spinous outgrowths.     

SYSTEMATICS OF THE CALCIFIED GENERA OF THE GALAXAURACEAE (NEMALIALES,RHODOPHYTA) WITH AN EMPHASIS ON TAIWAN SPECIES1

The current separation of the calcified genera Actinotrichia Decaisne, Galaxaura Lamouroux, and Tricleocarpa Huisman et Borowitzka in the Galaxauraceae is largely based on type of life history (whether the gametophytes and tetrasporophytes are isomorphic or heteromorphic with respect to gross morphology or cortical‐cell features) and on features of postfertilization development (such as the composition of the pericarp). We reexamined the phylogenetic relationships of these genera based on comparative rbcL sequence analysis, types of life cycle, and cystocarp development. Four distinct assemblages have been identified: an Actinotrichia clade, a Tricleocarpa clade, a Galaxaura clade (containing the type species), and a Dichotomaria clade made of a number of formerly Galaxaura species (D. obtusata [Ellis et Solander] Lamarck, D. marginata [Ellis et Solander] Lamarck, and D. diesingiana [Zanardini] Huisman, Harper and Saunders). Key differences between Dichotomaria and Galaxaura include the habit of the gametophytic and tetrasporophytic generations (isomorphic in Dichotomaria and dimorphic in Galaxaura) as well as the presence or absence of a persistent pericarp in the cystocarp (present in Dichotomaria and absent in Galaxaura). Molecular data do not support monophyly for the putatively pantropical species Galaxaura rugosa, Dichotomaria obtusata, and D. marginata, all of which we conclude are in need of taxonomic revision.     

Molecular phylogeny,systematics, and revision of the type species of Lobomonas,L. francei (Volvocales,Chlorophyta) and closely related taxa

In the present study, three new strains of the rare volvocalean green alga Lobomonas were isolated from field‐collected samples, one from Sardinia (Italy) and two from Argentina, and comparatively studied. The Sardinian and one of the Argentinian strains were identified as Lobomonas francei, the type species of the genus, whereas the second Argentinian strain corresponded to L. panduriformis. Two additional nominal species of Lobomonas from culture collections (L. rostrata and L. sphaerica) were included in the analysis and shown to be morphologically and molecularly identical to the L. francei strains. The presence, number, and shapes of cell wall lobes, the diagnostic criterion of Lobomonas, were shown to be highly variable depending on the chemical composition of the culture medium used. The analyses by SEM gave evidence that the cell wall lobes in Lobomonas originate at the junctions of adjacent cell wall plates by extrusion of gelatinous material. The four L. francei strains had identical nrRNA gene sequences and differed by only one or two substitutions in the ITS1 + ITS2 sequences. In the phylogenetic analyses, L. francei and L. panduriformis were sister taxa; however, another nominal Lobomonas species (L. monstruosa) did not belong to this genus. Lobomonas, together with taxa designated as Vitreochlamys, Tetraspora, and Paulschulzia, formed a monophyletic group that in the combined analyses was sister to the “Chlamydomonas/Volvox‐clade.” Based on these results, Lobomonas was revised, the diagnosis of the type species emended, a lectotype and an epitype designated, and several taxa synonymized with the type species.     

Three gene phylogeny of the Thoreales (Rhodophyta) reveals high species diversity

The freshwater red algal order Thoreales has triphasic life history composed of a diminutive diploid “Chantransia” stage, a distinctive macroscopic gametophyte with multi‐axial growth and carposporophytes that develop on the gametophyte thallus. This order is comprised of two genera, Thorea and Nemalionopsis. Thorea has been widely reported with numerous species, whereas Nemalionopsis has been more rarely observed with only a few species described. DNA sequences from three loci (rbcL, cox1, and LSU) were used to examine the phylogenetic affinity of specimens collected from geographically distant locations including North America, South America, Europe, Pacific Islands, Southeast Asia, China, and India. Sixteen species of Thorea and two species of Nemalionopsis were recognized. Morphological observations confirmed the distinctness of the two genera and also provided some characters to distinguish species. However, many of the collections were in “Chantransia” stage rather than gametophyte stage, meaning that key diagnostic morphological characters were unavailable. Three new species are proposed primarily based on the DNA sequence data generated in this study, Thorea kokosinga‐pueschelii, T. mauitukitukii, and T. quisqueyana. In addition to these newly described species, one DNA sequence from GenBank was not closely associated with other Thorea clades and may represent further diversity in the genus. Two species in Nemalionopsis are recognized, N. shawii and N. parkeri nom. et stat. nov. Thorea harbors more diversity than had been recognized by morphological data alone. Distribution data indicated that Nemalionopsis is common in the Pacific region, whereas Thorea is more globally distributed. Most species of Thorea have a regional distribution, but Thorea hispida appears to be cosmopolitan.     

Biomass production and fatty acid accumulation in Chlorella sp. (strain DEC1B) isolated from a petrol refinery in Huelva (Spain)

A microalgal strain was established from Cepsa's refinery wastewater treatment plant in Huelva (southwest of Spain). Genetic analysis of the chloroplastic rbcL gene encoding for the large subunit of the ribulose bisphosphate carboxylase enzyme (Rubisco) showed the strain had high homology with other known rbcL sequences of the genus Chlorella. The strain grows well autotrophically in minimum mineral medium, with a growth rate of 0.28 ± 0.012 day^?1 and a biomass productivity of 138.9 ± 6.7 mg L^?1 day^?1. N‐starvation and/or over illumination with 650 µmol photons m^?2 s^?1 of PAR light on the cultures induced a significant increase in the intracellular content of lipids in this microalga. Total lipids were extracted from the strain biomass with 2:1 chloroform‐methanol, and they accounted for approximately 50% of the dry biomass. Polyunsaturated fatty acids (PUFAs) represented 60.4% of the total fatty acids found in the strain, thus making this biomass attractive as a high added‐value product source. The strain was able to grow efficiently in the refinery treated wastewater from which it was isolated, providing an attractive advantage for further development of more sustainable algal biomass production processes at reduced costs close to a petrol refinery area.     

Crusticorallina gen. nov., a nongeniculate genus in the subfamily Corallinoideae (Corallinales,Rhodophyta)

Molecular phylogenetic analyses of 18S rDNA (SSU) gene sequences confirm the placement of Crusticorallina gen. nov. in Corallinoideae, the first nongeniculate genus in an otherwise geniculate subfamily. Crusticorallina is distinguished from all other coralline genera by the following suite of morpho‐anatomical characters: (i) sunken, uniporate gametangial and bi/tetrasporangial conceptacles, (ii) cells linked by cell fusions, not secondary pit connections, (iii) an epithallus of 1 or 2 cell layers, (iv) a hypothallus that occupies 50% or more of the total thallus thickness, (v) elongate meristematic cells, and (vi) trichocytes absent. Four species are recognized based on rbcL, psbA and COI‐5P sequences, C. painei sp. nov., the generitype, C. adhaerens sp. nov., C. nootkana sp. nov. and C. muricata comb. nov., previously known as Pseudolithophyllum muricatum. Type material of Lithophyllum muricatum, basionym of C. muricata, in TRH comprises at least two taxa, and therefore we accept the previously designated lectotype specimen in UC that we sequenced to confirm its identity. Crusticorallina species are very difficult to distinguish using morpho‐anatomical and/or habitat characters, although at specific sites, some species may be distinguished by a combination of morpho‐anatomy, habitat and biogeography. The Northeast Pacific now boasts six coralline endemic genera, far more than any other region of the world.     

Subunit control of Rubisco biosynthesis – a relic of an endosymbiotic past?

Subunits of multiprotein complexes in the chloroplasts of eukaryotic cells are frequently the products of protein synthesis in the nucleus-cytoplasm and the organelle. The mechanisms that integrate gene expression in the two compartments are poorly understood. Ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) is a model of nuclear-chloroplast interactions because it is a relatively simple example of a multimeric complex, being composed of nuclear DNA-encoded (RbcS) small subunits (SS) and chloroplast DNA-encoded ( rbcL) large subunits (LS). One means by which RbcS and rbcL expression are coordinated is by the adjustment of subunit stoichiometries in response to the abundance of unassembled subunits. This type of integration occurs by two principal mechanisms. When SS accumulation is limiting (as in antisense mutants of tobacco), LS levels are primarily adjusted to those of the SS at the level of rbcL mRNA translation initiation. On the other hand, when LS accumulation is limiting (as in some rbcL nonsense and missense mutants), SS levels are adjusted to those of the LS at the level of protein degradation. These two mechanisms may be ubiquitous and serve as either fine-tune or course controls during normal growth and development. Autogenous control is a central theme of prokaryotic gene regulation, and intergenomic regulation of RbcS and rbcL expression by subunit concentrations may be a relic of an endosymbiotic past.