Effects of metabolic rate on protein evolution

Since the modern evolutionary synthesis was first proposed early in the twentieth century, attention has focused on assessing the relative contribution of mutation versus natural selection on protein evolution. Here we test a model that yields general quantitative predictions on rates of protein evolution by combining principles of individual energetics with Kimura's neutral theory. The model successfully predicts much of the heterogeneity in rates of protein evolution for diverse eukaryotes (i.e. fishes, amphibians, reptiles, birds, mammals) from different thermal environments. Data also show that the ratio of non-synonymous to synonymous nucleotide substitution is independent of body size, and thus presumably of effective population size. These findings indicate that rates of protein evolution are largely controlled by mutation rates, which in turn are strongly influenced by individual metabolic rate.     

Intractable mixtures and the origin of life

Attempts to model the spontaneous chemistry which presumably preceded the origin of life on Earth commonly result in the production of intractably complex mixtures of organic compounds. It is, therefore, difficult to understand how any kind of evolutionary process might have begun. A number of potential solutions to this well-known and frustrating problem have been offered in the literature over the years. The present contribution briefly reviews and evaluates some of the more promising possibilities.     

Possible molecular evolution of biomembranes: from single-chain to double-chain lipids

We have studied a possible evolution process permitting a 'primitive' membrane to evolve towards a membrane structure with an outer wall, similar to that of bacteria. We have investigated whether a polysaccharide bearing hydrophobic phytyl or cholesteryl chains coats giant vesicles made of single- or double-chain lipids. Phytyl-pullulan 5b was found to bind to the surface of vesicles made of either single- or double-chain lipids. In contrast, cholesteryl-pullulan 5a only coated the surface of vesicles made of double-chain lipids. These results indicate that there must be a close match between the size and shape of membrane constituents and the hydrophobic molecules to be inserted. This process could, thus, provide a selection mechanism of lipid-membrane constituents during the course of biomembrane evolution. The presence of the above 'hydrophobized' polysaccharides on the surface of different giant vesicles was identified by lectin binding. Both concanavalin A and annexin V were shown by fluorescence microscopy to bind spontaneously to vesicles made of double-chain lipids. Our experiments exemplify that self-organization of amphiphiles into closed vesicles in aqueous solution automatically leads to the coating of vesicles by 'hydrophobized' polysaccharides, which then permit lectin binding. This is a possible mechanism for the evolution of primitive membranes towards 'proto-cells'.     

U7 snRNAs： A Computational Survey

U7 small nuclear RNA (snRNA) sequences have been described only for a handful of animal species in the past. Here we describe a computational search for func- tional U7 snRNA genes throughout vertebrates including the upstream sequence elements characteristic for snRNAs transcribed by polymerase Ⅱ. Based on the results of this search, we discuss the high variability of U7 snRNAs in both se- quence and structure, and report on an attempt to find U7 snRNA sequences in basal deuterostomes and non-drosophilids insect genomes based on a combination of sequence, structure, and promoter features. Due to the extremely short se- quence and the high variability in both sequence and structure, no unambiguous candidates were found. These results cast doubt on putative U7 homologs in even more distant organisms that are reported in the most recent release of the Rfam database.     

Artificial selection of stable rhizosphere microbiota leads to heritable plant phenotype changes

Artificial selection of microbiota opens new avenues for improving plants. However, reported results lack consistency. We hypothesised that the success in artificial selection of microbiota depends on the stabilisation of community structure. In a ten-generation experiment involving 1,800 plants, we selected rhizosphere microbiota of Brachypodium distachyon associated with high or low leaf greenness, a proxy of plant performance. The microbiota structure showed strong fluctuations during an initial transitory phase, with no detectable leaf greenness heritability. After five generations, the microbiota structure stabilised, concomitantly with heritability in leaf greenness. Selection, initially ineffective, did successfully alter the selected property as intended, especially for high selection. We show a remarkable correlation between the variability in plant traits and selected microbiota structures, revealing two distinct sub-communities associated with high or low leaf greenness, whose abundance was significantly steered by directional selection. Understanding microbiota structure stabilisation will improve the reliability of artificial microbiota selection.     

Global research trends and gaps in ecological compensation studies from 1990 to 2020: A scientometric review

Ecosystems are facing severe destruction and threats due to unreasonable human utilization. Repairing damage to nature and protect biodiversity through ecological compensation will be an inevitable measure for achieving sustainable development. To explore the current research hotspots and future research directions of ecological compensation, this paper tries to search the WoS Core Collection and collects 685 ecological compensation papers published between 1990 and 2020. R language and CiteSpace software were applied in this paper. It is found that: (1) The number of articles has gone through the initial explorations, fluctuating growth, and rapid development of the field from 1990 to 2020. Only 7.5% of authors have published more than two papers. (2) Regarding the production of papers, the top 3 countries are the US, China, and the UK. At present, the majority of countries focus on independent research, and international cooperation is gradually strengthening. (3) The current research hotpots mainly invlove biodiversity and sustainable development, ecological compensation for forests and water resources, China's Grain-to-Green Project, poverty reduction, livelihood issues, public participation willingness and equity issues, indicating that ecological compensation is a rapidly emerging interdisciplinary academic field. (4) The results reveal several research directions in the future: strengthening theoretical research, resolving issues pertaining to the complex relationships among stakeholders, encouraging a transformation from qualitative to quantitative research, increasing the focus of ecological compensation models on local conditions, and applying more scientific models and high-tech tools in effect evaluation.     

近20年内蒙古鄂托克旗草地降水利用效率时空演变的驱动力量化

降水利用效率(PUE)是评价干旱半干旱地区草地生产力与降水关系的有效指标。为进一步探究气候变化和人类活动对草地PUE的驱动机理,本研究采用改进的CASA模型估算了2001—2020年鄂托克旗草地净初级生产力(NPP),结合同期降水量的空间插值数据获取了研究区草地PUE,利用简单线性回归和分段线性回归分析了PUE的时空演变特征及其空间格局对6类气候因子的响应,并引入基于偏导数的量化分析方法定量评估了气候变化和人类活动对PUE动态的相对贡献。结果表明: 鄂托克旗草地PUE多年均值为0.748 g C·m^-2·mm^-1,年际波动呈显著下降趋势,下降速率为0.014 g C·m^-2·mm^-1·a^-1;PUE在空间上西低东高,沿气温、降水、相对湿度、日照时数和ET₀的增长梯度呈显著的单峰分段线性模式,而沿风速梯度表现为先快后慢的持续显著增长模式;研究区94.3%的草地表现为PUE衰减态势,且有43.6%为严重衰减,这一突出问题是气候变化和人类活动共同作用导致的,二者的贡献分别为-1.162×10^-2和-0.240×10^-2 g C·m^-2·mm^-1·a^-1,而气候变化是首要驱动力,其中降水是关键气候驱动因子。     

云南热带雨林:特征、生物地理起源与演化北大核心CSCD

云南热带雨林具有与东南亚低地热带雨林类似的群落结构、生态外貌特征和物种多样性,是亚洲热带雨林的一个类型。它的植物区系组成中有90%的属和多于80%的种为热带分布成分,其中约40%的属和70%的种为热带亚洲分布型,它含属种较多的优势科和在群落中重要值较大的科也与亚洲热带雨林相似,是亚洲热带雨林和植物区系的热带北缘类型。云南西南部、南部与东南部的热带雨林在群落结构和生态外貌上类似,但在南部与东南部之间有明显的植物区系分异,它们经历了不同的起源背景和演化历程。云南的热带雨林在很大程度上由西南季风维持。喜马拉雅隆升导致西南季风气候形成和加强,在云南热带局部地区产生了湿润气候,发育了热带雨林植被。现在的云南热带雨林里或其分布地区有落叶物种或热带落叶林存在,这不仅是季节性气候的影响,推测在晚第三纪或第四纪更新世云南热带地区曾经历了干旱气候。云南热带雨林的分布主要受制于局部生境,并非地区性气候条件。     

犬齿窝与人类中面部骨骼的演化

犬齿窝是包括现代人类在内的许多人族成员面部骨骼的重要性状,但在分类学上的意义仍存在争议。有学者认为该性状是一个发生于基础面形的近祖性状,除了一些例外,在灭绝和现生的大猿及人属中都存在。另有学者认为,犬齿窝是仅存在于智人及其直系祖先的衍生性状,在发育上与颧齿槽突嵴有关。这种关系并非总是成立,在智人中存在着明显的差异：弧型颧齿槽突嵴和直斜型颧齿槽突嵴与犬齿窝有时共存,有时不共存。我们由此推测,犬齿窝的发生和形态与上颌窦的前部发育有关,颧齿槽突嵴的形态与鼻窦的侧面发育有关。在人类演化的过程中,犬齿窝经历了不同的变形,比如上颌沟(如南方古猿非洲种、傍人粗壮种)、上颌小窝(如傍人粗壮种)、上颌沟(如匠人)或犬齿窝缺如(如傍人埃塞俄比亚种、傍人鲍氏种、肯尼亚扁脸人、人属鲁道夫种)。犬齿窝消失的原因各类群并不相同,如中新世和早更新世人属以及中更新世人属(如人属海德堡种/人属罗得西亚种、人属尼安德特种)。人属罗得西亚种具有弱化的犬齿窝,不具备演化为智人的可能,因此被排除在智人的演化支之外。