RAPD技术的特点及其在昆虫分类中的应用

随机扩增的多态性DNA(RAPD)技术,是近年来发展起来的一项DNA分子水平上 的大分子多态检测手段。由于它具有简捷、灵敏、对材料要求不高,取材少、成本低等优点, 备受人们青睐,在遗传学、分子进化、生物分类等领域被广泛地运用。在昆虫分类的过程中, 由于昆虫的种类繁多,形态、生态差异很大,许多在其它领域被广泛运用的分子生物学技术不能在昆虫分类中充分发挥作用。同时在昆虫分类中出现的一些问题却又需要用涉及遗传本质的分子生物学技术进行探讨和研究。本文就RAPD技术的特点及其在解决昆虫分类中的问题时的优势作一简介。     

Aim‐then‐shoot anemotaxis involved in the hopping approach of potato tuberworm moth Phthorimaea operculella toward a sex pheromone source

Male moths locate conspecific females by pheromone‐induced upwind flight maintained by detecting a visual flow, termed optomotor anemotaxis. Their behavioural pattern is characterized by an upwind surge in response to a pheromone stimulus and crosswind casting after odour loss, which is considered to be reset and restarted on receipt of another pheromone pulse. However, pheromone‐stimulated males of the potato tuberworm moth Phthorimaea operculella exhibit a series of short and straight intermittent flights, or hops, when moving upwind. It is unclear whether they navigate by employing the same behavioural pattern and wind detection mechanism as that used by flying moths. To analyze odour‐modulated anemotaxis in male potato tuberworm moths, a flat wind tunnel is constructed to give regular odour stimuli to an insect regardless of its location. Moths are subjected to pheromone pulses of different frequencies to test whether they show a behavioural pattern that is reset and restarted by a pheromone pulse. Moths on the ground are also subjected to crosswind shear to examine their detection of wind direction. Path analyses reveal that males surge upwind when they receive a pheromone pulse and exhibit casting by successive hops when they lose odour. This behavioural pattern appears to be similar to that of flying moths. When the direction of the airflow is switched orthogonally, males adjust their course angle accordingly when they are on the ground. It is suggested that, instead of optomotor anemotaxis, this ‘aim‐then‐shoot’ system aids the detection of wind direction, possibly by mechanosensory means.     

哀牢山亚热带常绿阔叶林土壤温度时空分布对模拟增温的响应

为把握森林不同深度的土壤温度对区域气候变暖的响应,评估气候变暖对亚热带森林土壤呼吸的影响,利用在哀牢山亚热带常绿阔叶林中设置的土壤增温和土壤呼吸人工控制实验,对2011—2013年的对照样地和增温样地不同深度的土壤温度实测数据进行了分析,结果表明:区域气候变暖导致的温度升高不改变土壤温度的年变化和日变化特征;干季的增温效应大于雨季;同一深度增温效应具有一定的年变化,但日变化不明显;增温效应在土壤表层较大,1—4月明显,2月最高,增温可达3℃;5 cm深度的平均增温效应在2℃左右,且年变化较小;随着深度的增加,增温效应呈现对数降低趋势;如果以0.5℃为增温效应的阈值,推算可得出:干季的影响深度为3.82 m,雨季可达12.04 m,年均为6.58 m。     

Combinatorial engineering to enhance thermostability of amylosucrase

Amylosucrase is a transglucosidase that catalyzes amylose-like polymer synthesis from sucrose substrate. About 60,000 amylosucrase variants from two libraries generated by the MutaGen random mutagenesis method were submitted to an in vivo selection procedure leading to the isolation of more than 7000 active variants. These clones were then screened for increased thermostability using an automated screening process. This experiment yielded three improved variants (two double mutants and one single mutant) showing 3.5- to 10-fold increased half-lives at 50 degrees C compared to the wild-type enzyme. Structural analysis revealed that the main differences between wild-type amylosucrase and the most improved variant (R20C/A451T) might reside in the reorganization of salt bridges involving the surface residue R20 and the introduction of a hydrogen-bonding interaction between T451 of the B' domain and D488 of flexible loop 8. This double mutant is the most thermostable amylosucrase known to date and the only one usable at 50 degrees C. At this temperature, amylose synthesis by this variant using high sucrose concentration (600 mM) led to the production of amylose chains twice as long as those obtained by the wild-type enzyme at 30 degrees C.     

Early response of herbaceous vegetation to Rhododendron ponticum subsp. baeticum invasion in European Atlantic forests

Questions

Rhododendron ponticum subsp. baeticum is an invasive shrub of growing concern in continental Europe, but little is known about its impact on native plant communities. Here we ask: do environmental conditions differ between forest stands invaded by it and uninvaded stands? Do these differences correlate with R. ponticum's cover? Are these differences associated with differences in taxonomic and functional diversity of vascular plant species of the herb layer? Can these vegetation changes be explained by the sorting of certain life-history traits by R. ponticum-induced environmental changes?

Location

Several forests invaded by R. ponticum in the French Atlantic domain.

Methods

We recorded vegetation composition and a number of environmental variables in 400-m² plots that were established in 64 paired forest stands (32 invaded vs 32 uninvaded). We compiled traits from existing databases. We computed several metrics of taxonomic and functional diversity. We compared environmental variables and diversity metrics between invaded and uninvaded stands. We used correlation and regression analyses to relate them with R. ponticum's cover. We ran RLQ and fourth-corner analyses to explore the relationships between R. ponticum invasion, environmental variables, species traits, and vegetation composition.

Results

Independent of its abundance, R. ponticum invasion was associated with lower light arrival at the forest floor and increased litter thickness. Concomitantly, species richness and diversity and trait diversity were reduced. The major driver of species assemblages was soil pH, which strongly interacted with the invasion gradient. R. ponticum did not sort species according to traits associated with shade tolerance and thick-litter tolerance. However, tree and shrub saplings were more abundant in invaded than uninvaded stands, at the expense of graminoid and fern species.

Conclusions

As R. ponticum becomes the dominant shrub, it exerts new selection forces on life-history traits of extant species, mostly via reduced light availability, increased litter thickness, and physical competition, thereby reducing taxonomic and functional diversity of the herb layer, without impeding tree and shrub self-regeneration, at least in the short term.     

海州湾春季短蛸的栖息分布特征及其与环境因子的关系

近年来,我国近海多种重要渔业资源处于不同程度的衰退状态,而短蛸具有生命周期短、生长迅速的特点,在我国近海经济渔获产量中占重要地位。然而,有关短蛸的栖息分布特征及其与环境因子的关系尚缺乏研究,不利于更好地保护和利用其资源。本研究根据2011年和2013—2017年春季海州湾的渔业资源和环境因子调查数据,采用随机森林模型、人工神经网络模型和广义提升回归模型3种机器学习方法分析了短蛸的栖息分布特征及其与环境因子的关系。结果表明: 随机森林模型的拟合效果和预测能力在3种模型中优势较大,选择该模型进行分析表明,底层水温、水深和底层盐度对短蛸的栖息分布有较大影响。短蛸的相对资源密度随底层水温、水深和底层盐度的增加均呈先上升后下降趋势。根据FVCOM模型模拟的环境数据,应用随机森林模型预测了短蛸在海州湾海域的栖息分布,发现短蛸主要分布在34.5°—35.8° N、119.7°—121° E之间的海域。     

Cd2+结合肽的筛选及与重金属离子的亲和作用

利用噬菌体随机十二肽库和亲和层析技术对重金属Cd进行亲和筛选,共获得两条Cd结合肽序列。将展示有Cd2 结合肽的噬菌体单克隆扩增物对不同重金属离子(Cd2 、Cr2 、Cu2 、Co2 、Zn2 、Ni2 )螯合的树脂进行亲和测定,结果表明Cu2 、Co2 、Zn2 、Ni2 对结合肽的亲和力高于Cd2 和Cr2 。抑菌解毒试验进一步确认了Cd2 结合肽对大肠杆菌重金属的解毒作用。显微观察可见金属结合肽与金属螯合树脂混合后分散度发生改变。     

The effects of heavy metal pollution on genetic diversity in zinc/cadmium hyperaccumulator Sedum alfredii populations

The genetic diversity and population structure of seven populations of Sedum alfredii growing in lead/zinc (Pb/Zn) mine spoils or in uncontaminated soils from eastern and southern China were investigated using random amplified polymorphic DNA (RAPD) technology. Four of the sampled sites were heavily contaminated with heavy metals (Zn, Cd, Pb), and extremely high concentrations of Zn, Cd, and Pb were found among these corresponding populations. A significant reduction of genetic diversity was detected in the mining populations. The reduction of genetic diversity could be derived from a bottleneck effect and might also be attributed to the prevalence of vegetative reproduction of the mining populations. Analysis of molecular variance (AMOVA) and the unweighted pair group method with arithmetic mean (UPGMA) tree derived from genetic distances further corroborated that the genetic differentiation between mine populations and uncontaminated populations was significant. Polymorphism with the heavy metal accumulation capability of S. alfredii probably due to the genetic variation among populations and heavy metal contamination could have more impact on the genetic diversity and population structure of S. alfredii populations than geographic distance.     

Efficiency of PCR-based methods in discriminating Bifidobacterium longum ssp. longum and Bifidobacterium longum ssp. infantis strains of human origin

Bifidobacterium longum is considered to play an important role in health maintenance of the human gastrointestinal tract. Probiotic properties of bifidobacterial isolates are strictly strain-dependent and reliable methods for the identification and discrimination of this species at both subspecies and strain levels are thus required. Differentiation between B. longum ssp. longum and B. longum ssp. infantis is difficult due to high genomic similarities. In this study, four molecular-biological methods (species- and subspecies-specific PCRs, random amplified polymorphic DNA (RAPD) method using 5 primers, repetitive sequence-based (rep)-PCR with BOXA1R and (GTG)₅ primers and amplified ribosomal DNA restriction analysis (ARDRA)) and biochemical analysis, were compared for the classification of 30 B. longum strains (28 isolates and 2 collection strains) on subspecies level. Strains originally isolated from the faeces of breast-fed healthy infants (25) and healthy adults (3) showed a high degree of genetic homogeneity by PCR with subspecies-specific primers and rep-PCR. When analysed by RAPD, the strains formed many separate clusters without any potential for subspecies discrimination. These methods together with arabionose/melezitose fermentation analysis clearly differentiated only the collection strains into B. longum ssp. longum and B. longum ssp. infantis at the subspecies level. On the other hand, ARDRA analysis differentiated the strains into the B. longum/infantis subspecies using the cleavage analysis of genus-specific amplicon with just one enzyme, Sau3AI. According to our results the majority of the strains belong to the B. longum ssp. infantis (75%). Therefore we suggest ARDRA using Sau3AI restriction enzyme as the first method of choice for distinguishing between B. longum ssp. longum and B. longum ssp. infantis.