Effect of nitrate pulses on the nitrate-uptake rate,synthesis of mRNA coding for nitrate reductase,and nitrate-reductase activity in the roots of barley seedlings

Using pulses of nitrate, instead of the permanent presence of external nitrate, to induce the nitrate-assimilating system in Hordeum vulgare L., we demonstrated that nitrate can be considered as a trigger or signal for the induction of nitrate uptake, the appearance of nitratereductase activity and the synthesis of mRNA coding for nitrate reductase. Nitrate pulses stimulated the initial rate of nitrate uptake, even after subsequent cultivation in N-free medium, and resulted in a higher acceleration of the uptake rate in the presence of nitrate than in its absence.Abbreviations NR nitrate reductase     

Electrically induced calcium elevation,activation, and parthenogenetic development of bovine oocytes

The influence of electrical stimulation on the level of intracellular Ca²⁺ in bovine oocytes, as well as activation and extent of parthenogenetic development, was investigated. Mature oocytes were electrically stimulated at 29 hr of maturation, and intracellular Ca²⁺ concentration was determined with the Ca²⁺ indicator fura-2 dextran (fura-2 D). The Ca²⁺ response of oocytes to a given electrical pulse was variable. Oocytes responded with either no Ca²⁺ rise from baseline (≈? 12 nM), a short-duration Ca²⁺ rise (from 12 nM to 300 nM) that returned to baseline within 2 min of the pulse, or a long-duration Ca²⁺ rise (from 12 nM to 1,000–2,000 nM) that never returned to baseline during the 8 min period over which the oocytes were monitored. In these oocytes, Ca²⁺ level returned to baseline when oocytes were removed from 0.30 M mannitol and placed in an ionic medium. Increasing field strength or pulse duration tended to increase the proportion of oocytes displaying a Ca²⁺ rise, and at 1.0 kVcm^?1 for 40 μsec, all oocytes displayed a long-duration Ca²⁺ elevation. Direct transfer of oocytes from culture medium to mannitol also triggered a Ca²⁺ rise. Multiple stimulations, either electrical or by transferring to mannitol, produced multiple Ca²⁺ rises. This mannitol-induced Ca²⁺ rise could be inhibited by first washing the oocytes in medium containing equal parts of 0.30 M mannitol and phosphate buffered saline (PBS). The level of Ca²⁺ stimulation affected activation and development of oocytes. Insufficient, or, conversely, excessive Ca²⁺ stimulation impaired development. Optimum development was obtained with (1) three pulses of 0.2 kVcm^?1 for 20 μsec, each pulse 22 min apart, after direct transfer of oocytes from culture medium to mannitol (22% blastocysts) or (2) three pulses of 1.0 kVcm^?1 for 20 μsec after transfer of oocytes from culture medium to medium containing equal parts mannitol and PBS, then to mannitol (24% blastocysts). This procedure avoided induction of a Ca²⁺ rise prior to the pulse. The results indicate that the level of Ca²⁺ stimulation can be regulated by incubation conditions prior to the pulse and, to some extent, by field strength and pulse duration. The level of electrical stimulation influenced oocyte Ca²⁺ response, activation, and parthenogenetic development. © 1993 Wiley-Liss, Inc.     

Recognition of errors in three-dimensional structures of proteins

A major problem in the determination of the three-dimensional structure of proteins concerns the quality of the structural models obtained from the interpretation of experimental data. New developments in X-ray crystallography and nuclear magnetic resonance spectroscopy have acceleratedd the process of structure determination and the biological community is confronted with a steadily increasing number of experimentally determined protein folds. However, in the recent past several experimentally determined protein structures have been proven to contain major errors, indicating that in some cases the interpretation of experimental data is difficult and may yield incorrect models. Such problems can be avoided when computational methods are employed which complement experimental structure determinations. A prerequisite of such computational tools is that they are independent of the parameters obtained from a particular experiment. In addition such techniques are able to support and accelerate experimental structure determinations. Here we present techniques based on knowledge based mean fields which can be used to judge the quality of protein folds. The methods can be used to identify misfolded structures as well as faulty parts of structural models. The techniques are even applicable in cases where only the C_α trace of a protein conformation is available. The capabilities of the technique are demonstrated using correct and incorrect protein folds. © 1993 Wiley-Liss, Inc.     

ELF磁场对3T3细胞生长的影响及其机理的探讨

用细胞分析成像光盘记录系统测量了3T3细胞在某些ELF磁场和温度条件下生长周期的变化.实验结果表明,只有某些频率的ELF磁场才对细胞生长产生影响,磁场对细胞生长的影响还与培养细胞的生化环境有关.温度和ELF磁场都能影响细胞的生长.但二者的机理是不一样的,当撤除ELF磁场后,细胞在短时间内(2天以上)继续保持着ELF场对其生长的影响.而细胞生长周期能在短时间内(2天以内)随着温度的变化而变化.温度引起的细胞生长的变化可能与细胞内的各种生长因子、生物离子的活性有关.ELF磁场引起的细胞生长的变化可能与ELF磁场对细胞膜的影响有关,与细胞内细胞生长必不可少的生物离子(如Ca~(2+))的浓度有关.     

Toward a hypothesis-free understanding of how phosphorylation dynamically impacts protein turnover

The turnover measurement of proteins and proteoforms has been largely facilitated by workflows coupling metabolic labeling with mass spectrometry (MS), including dynamic stable isotope labeling by amino acids in cell culture (dynamic SILAC) or pulsed SILAC (pSILAC). Very recent studies including ours have integrated themeasurement of post-translational modifications (PTMs) at the proteome level (i.e., phosphoproteomics) with pSILAC experiments in steady state systems, exploring the link between PTMs and turnover at the proteome-scale. An open question in the field is how to exactly interpret these complex datasets in a biological perspective. Here, we present a novel pSILAC phosphoproteomic dataset which was obtained during a dynamic process of cell starvation using data-independent acquisition MS (DIA-MS). To provide an unbiased “hypothesis-free” analysis framework, we developed a strategy to interrogate how phosphorylation dynamically impacts protein turnover across the time series data. With this strategy, we discovered a complex relationship between phosphorylation and protein turnover that was previously underexplored. Our results further revealed a link between phosphorylation stoichiometry with the turnover of phosphorylated peptidoforms. Moreover, our results suggested that phosphoproteomic turnover diversity cannot directly explain the abundance regulation of phosphorylation during cell starvation, underscoring the importance of future studies addressing PTM site-resolved protein turnover.     

Repair effect of thymine radical anion by echinocoside using pulse radiolysis

Repair activities of thymine radical anion by echinocoside, isolated from Pedicularis plicata. were studied using pulse radiolysis technique. The thymine radical anion was produced by the reaction of hydrated electron with thymine. Echinocoside. one of the polyphenols of phenylpropanoid glycoside, was added to the thymine aqueous solution saturated with N2. Kinetic analysis by transient absorption spectrum showed that thymine radical anion was formed at first, and then after several decades of microseconds of pulse radiolysis. the spectrum of thymine radical anion was changed to that of echinocoside radical anion. The evidence indicated that thymine radical anion was repaired through one-electron-transfer between the DNA base radical anion and echinocoside. The rate constant of electron transfer by echinocoside was 1.45× 109 dm3 · mol1 · s 1.     

用细胞色素C法检测非真空电子束辐射的间接作用

本文提出了一种检测非真空电束辐射的间接作用的一种方法,根据氧化型和还原型的细胞色素Ｃ的吸收光谱不同,从而测量非真空电子束作用对应的辐射分解的自由基总量。     

Methane emission from a wetland rice field as affected by salinity

The impact of salinity on CH₄ emission was studied by adding salt to a Philippine rice paddy, increasing pore water EC to approx. 4 dS.m^-1 Methane emission from the salt-amended plot and adjacent control plots was monitored with a closed chamber technique. The addition of salt to the rice field caused a reduction by 25% in CH₄ emission. Rates of methane emissions from intact soil cores were measured during aerobic and anaerobic incubations. The anaerobic CH₄ fluxes from the salt-amended soil cores were three to four times lower than from cores of the control plot, whereas the aerobic CH₄ fluxes were about equal. Measurements of the potential CH₄ production with depth showed that the CH₄ production in the salt-amended field was strongly reduced compared to the control field. Calculation of the percentage CH₄ oxidized of the anaerobic flux indicated that CH₄ oxidation in the salt-amended plot was even more inhibited than CH₄ production. The net result was about equal aerobic CH₄ fluxes from both salt-amended plots and non-amended plots. The data illustrate the importance of both CH₄ production and CH₄ oxidation when estimating CH₄ emission and show that the ratio between CH₄ production and CH₄ oxidation may depend on environmental conditions. The reduction in CH₄ emission from rice paddies upon amendment with salt low in sulfate is considerably smaller than the reduction in CH₄ emission observed in a similar study where fields were amended with high-sulfate containing salt (gypsum). The results indicate that CH₄ emissions from wetland rice fields on saline, low-sulfate soils are lower than CH₄ emissions from otherwise comparable non-saline rice tields. However, the reduction in CH₄ emission is not proportional to the reduction in CH₄ production