Are Water Beetles Good Indicators of Biodiversity in Mediterranean Aquatic Ecosystems? The Case of the Segura River Basin (SE Spain)

Water beetles were examined for use as potential biodiversity indicators in continental aquatic ecosystems in a semiarid Mediterranean region, the Segura river basin (SE Spain). The indicator value of water beetles was investigated by examining the degree to which their species richness patterns was correlated with other groups (Plecoptera, Trichoptera, Mollusca, Heteroptera and Ephemeroptera), and the efficiency of water beetle area networks (selected by complementarity) in conserving overall groups richness. The species richness patterns of Coleoptera, Ephemeroptera, Plecoptera and Trichoptera were significantly correlated with the Remaining Richness value (RR), defined as the total number of species found at a site (of all six groups examined) minus the number of species belonging to the considered indicator group. Area networks for Coleoptera selected by complementarity represented the highest RR percentage (84.46%) and contained more than 78% species of each group. Furthermore, water beetles meet most of the criteria proposed in the literature for choosing biodiversity indicator taxa. In our study, the correlation values and the percentage of species represented by family, genus and species complementary networks were similar and we suggest that the higher taxa of water beetles (genera or families) can be used as biodiversity surrogates for cost-effective practical surveys.     

Assessment of Extinction Risk and Reasons for Decline in Sturgeon

Sturgeon populations in the Danube River have been affected by a combination of hydropower development, over-harvesting, habitat degradation from agricultural and industrial practices and from urbanization. The effects of these changes have been monitored on six sturgeon species inhabiting the Danube River. Two of them are resident species, while the other four migrate to the river for spawning. Atlantic sturgeon (Acipenser sturio) has completely disappeared from this region. Ship sturgeon (Acipenser nudiventris) is very rare in professional fishing catches. Beluga (Huso huso), Russian sturgeon (Acipenser gueldenstaedtii), stellate sturgeon (Acipenser stellatus) and sterlet (Acipenser ruthenus) are endangered with different levels of extinction risk. Here, we model the time dependence of the beluga and Russian sturgeon catch in the Serbian part of the Danube River. Predicted extinction of Russian sturgeon was estimated to fall around the middle of the century, and for beluga approximately at middle of the millennium. Suggestions for sturgeon conservation measures on a national level and coordination of all relevant institutions in Serbia are also presented.     

Evolution of Mesobuthus gibbosus (Brullé, 1832) (Scorpiones: Buthidae) in the northeastern Mediterranean region

Sequence data derived from two mitochondrial markers, 16S rRNA and COI genes, were used to infer the evolutionary history of 47 insular and mainland populations covering most of the distributional range of the northeastern Mediterranean scorpion species Mesobuthus gibbosus. Based on the estimated divergence times of Mesobuthus lineages, the temporal frame of the genus differentiation in the northeastern Mediterranean region is placed in middle Miocene (15 million years ago). The biogeographic affinities of M. gibbosus populations point towards a mainly vicariant pattern of differentiation of the species which is consistent with the geological events that transformed the Aegean region during the period from 12 to 5 million years ago. M. gibbosus is an old northeastern Mediterranean species that has retained valuable bits of genetic information, reflecting some of the oldest vicariant events that have occurred in the area. Most importantly, the history witnessed by M. gibbosus has not been obscured by more recent palaeoevents of the region. Therefore, the case of M. gibbosus is in favour of a taxon-oriented 'perception' of the natural history of a given area.     

韩国与中国东北地区松鼠线粒体DNA控制区的序列变异

为了研究松鼠东北亚种(Sciurus vulgaris manchuricusThomas)不同种群的序列变异水平并进一步确定分类地位,我们分析了韩国5个地点和中国东北2个地点的松鼠标本的线粒体DNA控制区的全序列(1 058 bp)。39个韩国松鼠标本显示出21种单倍型,这些单倍型间的平均Tamura-Nei距离为1·0%; 24个中国松鼠标本显示21种单倍型,单倍型间的平均Tamura-Nei距离为1·4% (1 058 bp的全序列中发生变异的位点有119个,占11·2%)。韩国松鼠和中国松鼠间的平均距离为1·3%。并且韩国和中国松鼠的所有42个单倍型形成了一个单系分支,Fst值为0·04,表明在两个国家的松鼠间没有发生遗传分化。因此,序列分析的分子生物学的结果支持现行的分类,即来自韩国的朝鲜亚种(S·v·coreae)是中国北部地区松鼠东北亚种(S·v·manchuricus)的同物异名。这还需要进一步对北朝鲜和中国东北其它地区更多标本的分子和形态学分析来验证这一结论。     

横断山北部高山区不同生态条件下土壤微生物数量及其与生态因子的相关性

采用全球定位系统(GPS)采集了横断山北部高山区35个样点的土样,用稀释平板法对该区细菌、真菌和放线菌进行分离计数,并分析了微生物数量与土壤养分、土壤水分、土地利用方式和pH等因子的相关性。结果表明,该区域3大类土壤微生物数量表现为细菌>放线菌>真菌。土壤微生物数量在不同区域表现为松林口>雀儿山>折多山;林地微生物比草地丰富,但不及草地微生物均衡。微生物数量与土壤理化因子间的相关分析表明,放线菌数量与pH呈显著正相关,真菌数量与土壤全钾含量呈极显著正相关。     

稻草覆盖对红壤丘陵茶园的生态调控效应

在红壤丘陵区幼龄茶园通过连续4年稻草覆盖的大田试验,研究了稻草覆盖对茶园的生态综合调控效应。结果表明,稻草覆盖改良了土壤理化性状,提高了茶树生长时期(3~10月)的土壤水分含量,特别是土壤表层(0~20 cm)的水分含量;缓冲了茶园土壤温度变化;抑制了茶园杂草的生长;增加了蜘蛛等天敌的数量,有效地控制了假眼小绿叶蝉和茶蚜虫等害虫数量,但茶尺蠖显著增加;有利于蚯蚓的生长,改善了茶园生态环境。     

河南开封地区的蚂蚁资源

蚂蚁是河南开封地区大型土壤动物的优势类群,其种群数量庞大,分布较广。通过调查获得开封地区蚂蚁的基本资料:包括5亚科,18属,43种。优势种为铺道蚁、粗面收获蚁和日本弓背蚁,且不同生境、不同地域内的蚂蚁种类和分布都有差异。     

Membrane-transferring sequences of the HIV-1 Gp41 ectodomain assemble into an immunogenic complex

The membrane-proximal stem region of gp41 has been postulated to host the two conserved membrane-transferring domains that promote HIV-1 fusion: the amino-terminal fusion peptide (FP) and the highly aromatic pre-transmembrane sequence. Our results confirm that the hydrophobic FP and membrane-proximal sequences come into contact and form structurally defined complexes. These complexes are immunogenic and evoke responses in rabbits that compete with the recognition of native functional gp41 by the 2F5 monoclonal antibody. We conclude that co-assembly of the FP and the pre-transmembrane sequences might exert a constraint that helps maintain a gp41 stem region pre-fusion structure.     

Improving the stability of an antibody variable fragment by a combination of knowledge-based approaches: validation and mechanisms

Numerous approaches have been described to obtain variable fragments of antibodies (Fv or scFv) that are sufficiently stable for their applications. Here, we combined several knowledge-based methods to increase the stability of pre-existing scFvs by design. Firstly, the consensus sequence approach was used in a non-stringent way to predict a large basic set of potentially stabilizing mutations. These mutations were then prioritized by other methods of design, mainly the formation of additional hydrogen bonds, an increase in the hydrophilicity of solvent exposed residues, and previously described mutations in other antibodies. We validated this combined method with antibody mAbD1.3, directed against lysozyme. Fourteen potentially stabilizing mutations were designed and introduced into scFvD1.3 by site-directed mutagenesis, either individually or in combinations. We characterized the effects of the mutations on the thermodynamic stability of scFvD1.3 by experiments of unfolding with urea, monitored by spectrofluorometry, and tested the additivity of their effects by double-mutant cycles. We also quantified the individual contributions of the resistance to denaturation ([urea](1/2)) and cooperativity of unfolding (m) to the variations of stability and the energy of coupling between mutations by a novel approach. Most mutations (75%) were stabilizing and none was destabilizing. The progressive recombination of the mutations into the same molecule of scFvD1.3 showed that their effects were mostly additive or synergistic, provided a large overall increase in protein stability (9.1 kcal/mol), and resulted in a highly stable scFvD1.3 derivative. The mechanisms of the mutations and of their combinations involved variations in the resistance to denaturation, cooperativity of unfolding, and likely residual structures of the denatured state, which was constrained by two disulfide bonds. This combined method should be applicable to any recombinant antibody fragment, through a single step of mutagenesis.