A novel solution for fluid flow problems based on the lattice Boltzmann method

Recently, phase separation and fluid flow problems have represented an important development in fluid dynamics, which has many important industrial applications. Lattice Boltzmann method (LBM) is the numerical method that explains the behaviour of fluid dynamics in mesoscopic scale single-component single-phase and multi-component multiphase flows. In this paper, we study the lattice Boltzmann models (LBMs) in two dimensions (2D) with nine directions (Q9), that is the D2Q9 model was used to study the phase separation and observe that the phenomenon of fluid flow in a cylinder has obstacle and square cavity. The simulation results show that fluid flows in the square cavity and in the cylinder, present phase separation of single-component multiphase fluid flow.     

Effects of phenylalanine and phenylpyruvate on ATP-ADP hydrolysis by rat blood serum

The nucleotide (ATP-ADP)/nucleoside (adenosine) ratio in the circulation can modulate the processes of vasoconstriction, vasodilatation and platelet aggregation. The main objective of the present study with rat blood serum was to evaluate the possibility of changes in nucleotide hydrolysis by phenylalanine (Phe) and phenylpyruvate (PP), the levels of which could increase in the circulation of individuals with phenylketonuria. Results demonstrated that Phe in the range 1.0-5.0 mM inhibited the ADP hydrolysis by rat serum. The effect of inhibition by Phe on ATP hydrolysis appeared only at a concentration of 5.0 mM. PP had no significant effect upon nucleotide hydrolysis. Kinetic analysis indicated that the inhibition of ADP and ATP hydrolysis by Phe in rat blood serum is uncompetitive. Conversely, Phe and PP did not affect the hydrolysis of p-nitrophenyl-5'-TMP by rat serum.     

中国特有金线鲃属鱼类研究的回顾与展望(鲤形目,鲤科)

金线鲃属鱼类是中国特有类群,几乎所有种类的生息繁衍都离不开洞穴环境,由于洞穴间的隔离作用,属内物种分化十分强烈.本文对以往有关金线鲃属的研究进行了回顾,将其研究历程分为5个不同阶段:发现期、静默期、恢复期、快速发展期和深入研究期,每个阶段都有不同的特点和代表性工作.以往的研究以分类学为主,向传统分类和系统分类两个方向开展.目前金线鲃属鱼类研究还存在一系列问题以及研究空白.未来有关的研究可在物种演化、生态学、生理学、行为学和保护生物学等多个方面深入进行.     

Quasi-likelihood estimation for relative risk regression models

For a prospective randomized clinical trial with two groups, the relative risk can be used as a measure of treatment effect and is directly interpretable as the ratio of success probabilities in the new treatment group versus the placebo group. For a prospective study with many covariates and a binary outcome (success or failure), relative risk regression may be of interest. If we model the log of the success probability as a linear function of covariates, the regression coefficients are log-relative risks. However, using such a log-linear model with a Bernoulli likelihood can lead to convergence problems in the Newton-Raphson algorithm. This is likely to occur when the success probabilities are close to one. A constrained likelihood method proposed by Wacholder (1986, American Journal of Epidemiology 123, 174-184), also has convergence problems. We propose a quasi-likelihood method of moments technique in which we naively assume the Bernoulli outcome is Poisson, with the mean (success probability) following a log-linear model. We use the Poisson maximum likelihood equations to estimate the regression coefficients without constraints. Using method of moment ideas, one can show that the estimates using the Poisson likelihood will be consistent and asymptotically normal. We apply these methods to a double-blinded randomized trial in primary biliary cirrhosis of the liver (Markus et al., 1989, New England Journal of Medicine 320, 1709-1713).     

On the effects of spatial heterogeneity on the persistence of interacting species

 The dynamics of two interacting theoretical populations inhabiting a heterogeneous environment are modelled by a system of two weakly coupled reaction–diffusion equations having spatially dependent reaction terms. Longterm persistence of both populations is guaranteed by an invasibility condition, which is itself expressed via the signs of certain eigenvalues of related linear elliptic operators with spatially dependent lowest order coefficients. The effects of change in these coefficients upon the eigenvalues are here exploited to study the effects of spatial heterogeneity on the persistence of interacting species through two particular ecological topics of interest. The first concerns when the location of favorable hunting grounds within the overall environment does or does not affect the success of a predator in predator–prey models, while the second concerns cases of competition models in which the outcome of competition in a spatially varying environment differs from that which would be expected in a spatially homogeneous environment. Received: 9 June 1997     

How a Small Double-Stranded Trick Can Mislead Sanger Sequencing

Notwithstanding the arrival of “third-generation sequencing,” Sanger sequencing, developed in 1980, is still the most accurate and used method for sequencing, although on a smaller scale. It is a powerful resource for studying sequences and discovering polymorphisms and genes, as well as regulatory elements. There has already been described a wide range of possible problems with this very sensitive and accurate technology. Here, we show that a specific event, related to genomes rich in repetitive sequences, can mislead operators working with Sanger sequencing.     

Stability and phase transitions in a mathematical model of Duchenne muscular dystrophy

We present a mathematical model to investigate the role of the immune system in the Duchenne muscular dystrophy disease. It is based on the assumption that the immune system contributes to the tissue damage and indeed its interaction with the muscle tissue after an initial endogenous damage can be described as a predator-prey system showing typical oscillations. In this article we investigate the dynamical properties of the system. We find that, for a biologically relevant parameters range, it shows two phase transitions between qualitative different behaviors corresponding to complete recover or to a state where muscle regeneration and degeneration coexist.     

The costs of being a restless intellect: Julian Huxley’s popular and scientific career in the 1920s

Julian Huxley’s (1887–1975) contribution to twentieth-century biology and science popularisation is well documented. What has not been appreciated so far is that despite Huxley’s eminence as a public scientific figure and the part that he played in the rise of experimental zoology in Britain in the 1920s, his own research was often heavily criticised in this period by his colleagues. This resulted in numerous difficulties in getting his scientific research published in the early 1920s. At this time, Huxley started his popular science career. Huxley’s friends criticised him for engaging in this actively and attributed the publication difficulties to the time that he allocated to popular science. The cause might also have its roots in his self-professed inability to delve deeply into the particularities of research. This affected Huxley’s standing in the scientific community and seems to have contributed to the fact that Huxley failed twice in the late 1920s to be elected to the Royal Society. This picture undermines to some extent Peter J. Bowler’s recent portrayal of Huxley as a science populariser.     

Executive dysfunction and the relation with behavioral problems in children with 47,XXY and 47,XXX

Neuroimaging studies have shown that having an extra X chromosome is associated with abnormal structure and function of brain areas in the frontal lobe, which is crucially involved in executive functioning. However, there is little of knowledge of the type and severity of executive dysfunction, and the impact on emotional and behavioral problems. The present study aims to provide in this. In total, 40 children (23 boys with 47,XXY and 17 girls with 47,XXX) with an extra X chromosome and 100 non‐clinical controls (47 boys and 53 girls) participated in the study. The participants were 9–18 years old. Processing speed and executive functioning were assessed using the Amsterdam Neuropsychological Testbattery (ANT) and the Dysexecutive Questionnaire (DEX). Problems in emotional and behavioral functioning were assessed with the Childhood Behavior Checklist (CBCL). Children with an extra X chromosome showed deficits in inhibition, mental flexibility, sustained attention and visual working memory. Parental report showed high levels of everyday manifestations of executive dysfunction. More severe inhibition difficulties were associated with higher levels of thought problems, aggression and rule breaking behavior. Boys and girls with an extra X chromosome could not be differentiated based on severity of executive dysfunction, however, girls had lower information processing speed than boys. These findings suggest that executive dysfunction may be part of the phenotype of children with an extra X chromosome, impacting the ability to function adequately in everyday life. Furthermore, children with impairments in inhibition may have more problems in regulating their thinking, emotions and behavior.