Prediction of the non-fertilizer N supply of mineral grassland soils

Different methods for estimating the non-fertilizer N supply (NFNS) of mineral grassland soils were compared. NFNS was defined as the N uptake on unfertilized plots. The potential mineralization rate (0–12 weeks), macroorganic matter and active microbial biomass (determined by the substrate-induced respiration method; SIR) were correlated positively with NFNS. The difference between the actual soil organic N or microbial N content (determined by the fumigation incubation method) and their contents under equilibrium conditions ( org. N and MB-N), however, gave the best estimations of NFNS. For field conditions the best estimation for NFNS was: NFNS (kg N ha^–1 yr^–1)=132.3+42.1× org. N (g kg^–1 soil; r=0.80). This method is based on the observation that, under old grassland swards, close relationships exist between soil texture and the amounts of soil organic N and microbial N. These relationships are assumed to represent equilibrium conditions as under old swards under constant management, the gain in soil organic N and microbial N equals the losses. Soils under young grassland and recently reclaimed soils contained less soil organic N and microbial N. In such soils the amounts of organic N and microbial N increase with time, which is reflected in a lower NFNS. The annual accumulation of organic and microbial N gradually becomes smaller until organic N, microbial N and NFNS reach equilibrium. The main advantage of the difference method in comparison with the other methods is its speed and simplicity.FAX no: +31 50337291     

Influence of rhizodeposition under elevated CO2 on plant nutrition and soil organic matter

Atmospheric CO₂ concentrations can influence ecosystem carbon storage through net primary production (NPP), soil carbon storage, or both. In assessing the potential for carbon storage in terrestrial ecosystems under elevated CO₂, both NPP and processing of soil organic matter (SOM), as well as the multiple links between them, must be examined. Within this context, both the quantity and quality of carbon flux from roots to soil are important, since roots produce specialized compounds that enhance nutrient acquisition (affecting NPP), and since the flux of organic compounds from roots to soil fuels soil microbial activity (affecting processing of SOM).From the perspective of root physiology, a technique is described which uses genetically engineered bacteria to detect the distribution and amount of flux of particular compounds from single roots to non-sterile soils. Other experiments from several labs are noted which explore effects of elevated CO₂ on root acid phosphatase, phosphomonoesterase, and citrate production, all associated with phosphorus nutrition. From a soil perspective, effects of elevated CO₂ on the processing of SOM developed under a C4 grassland but planted with C3 California grassland species were examined under low (unamended) and high (amended with 20 g m^–2 NPK) nutrients; measurements of soil atmosphere 13C combined with soil respiration rates show that during vegetative growth in February, elevated CO₂ decreased respiration of carbon from C4 SOM in high nutrient soils but not in unamended soils.This emphasis on the impacts of carbon loss from roots on both NPP and SOM processing will be essential to understanding terrestrial ecosystem carbon storage under changing atmospheric CO₂ concentrations.Abbreviations SOM soil organic matter - NPP net primary productivity - NEP net ecosystem productivity - PNPP p-nitrophenyl phosphate     

Changes in the origin and quality of soil organic matter after pasture introduction in Rondônia (Brazil)

We examined the effects of the conversion of tropical forest to pasture on soil organic matter (SOM) origin and quality along a chronosequence of sites, including a primary forest and six pastures. Bulk soil samples received a physical size-fractionation treatment to assess the contribution of each compartment to total SOM pool. Besides a general increase in total C and N stocks along the chronosequence, we observed a reduction of the relative contribution of the coarser fractions to total soil C content, and an increased concentration in the finer fractions. The origin of the C in each size fraction was established from measurements of¹³C abundance. After 80 years about 93% of the C in the least humified fraction of the top 10 cm of soil was of pasture origin, while in the most humified it was 82%. Chemical analyses indicated that the fine silt and coarse clay fractions contained the most refractory carbon.     

Metal distribution across different pools in the organic layer of a forest under acid deposition and its consequences for the metal dynamics

Acid atmospheric deposition can cause losses of metal nutrients from the organic layer of a soil. The size of these losses depend on the sizes of the different pools in which the metals are present, as these pools differ in mobility. The metal pools in an organic soil layer of a Douglas fir forest in the Netherlands subjected to acid deposition were determined by means of extractions and percolations. Na was mainly dissolved and exchangeably adsorbed, K dissolved, exchangeably adsorbed and present in the soil microbial biomass, Ca exchangeably adsorbed and present in organic precipitates, Mg exchangeably adsorbed and present in the soil biomass, and Mn exchangeably adsorbed and present in inorganic precipitates. The main part of the metals was exchangeably adsorbed. The adsorption affinity increased in the order Na < K < Mg < Mn ≈ Ca. The vertical distribution of the metals in the organic layer showed that all metals were continuously lost from the organic layer. The differences between the metals in retention and vertical distribution patterns were in agreement with their differences in deposition rate, pool distribution, and exchange affinity. Since the metals were mainly exchangeably adsorbed, and the acidifying cations dominated the atmospheric deposition, acid deposition and cation exchange must be processes that strongly affect the losses of metals from this organic soil layer. R F Huettl Section editor     

Rhizodeposition under ambient and elevated CO2 levels

As global CO₂ levels rise, can soils store more carbon and so buffer atmospheric CO₂ levels? Answering this question requires a knowledge of the rates of C inputs to soil and of CO₂ outputs via decomposition. Below-ground inputs from roots are a major component of the C flow into soils but are still poorly understood. In this article, new techniques for measuring rhizodeposition are reviewed and discussed and the need for cross-comparisons between methods is identified. One component of rhizodeposition, root exudation, is examined in more detail and evidence is presented which suggests that current estimates of exudate flow into soils are incorrect. A mechanistic mathematical model is used to explore how exudate flows might change under elevated CO₂.     

Cloning of the amphibolic Calvin cycle/OPPP enzyme d-ribulose-5-phosphate 3-epimerase (EC 5.1.3.1) from spinach chloroplasts: functional and evolutionary aspects

Exploiting the differential expression of genes for Calvin cycle enzymes in bundle-sheath and mesophyll cells of the C4 plant Sorghum bicolor L., we isolated via subtractive hybridization a molecular probe for the Calvin cycle enzyme d-ribulose-5-phosphate 3-epimerase (R5P3E) (EC 5.1.3.1), with the help of which several full-size cDNAs were isolated from spinach. Functional identity of the encoded mature subunit was shown by R5P3E activity found in affinity-purified glutatione S-transferase fusions expressed in Escherichia coli and by three-fold increase of R5P3E activity upon induction of E. coli overexpressing the spinach subunit under the control of the bacteriophage T₇ promoter, demonstrating that we have cloned the first functional ribulose-5-phosphate 3-epimerase from any eukaryotic source. The chloroplast enzyme from spinach shares about 50% amino acid identity with its homologues from the Calvin cycle operons of the autotrophic purple bacteria Alcaligenes eutrophus and Rhodospirillum rubrum. A R5P3E-related eubacterial gene family was identified which arose through ancient duplications in prokaryotic chromosomes, three R5P3E-related genes of yet unknown function have persisted to the present within the E. coli genome. A gene phylogeny reveals that spinach R5P3E is more similar to eubacterial homologues than to the yeast sequence, suggesting a eubacterial origin for this plant nuclear gene.Abbreviations R5P3E d-ribulose-5-phosphate 3-epimerase - RPI ribose-5-phosphate isomerase - TKL transketolase - PRK phosphoribulokinase - GAPDH glyceraldehyde-3-phosphate dehydrogenase - FBP fructose-1,6-bisphophatase - FBP fructose 1,6-bisphosphate - G6PDH glucose-6-phosphate dehydrogenase - 6PGDH 6-phosphogluconate dehydrogenase - OPPP oxidative pentose phosphate pathway - Rubisco ribulose-1,5-bisphosphate carboxylase/oxygenase - FBA fructose-1,6-bisphophate aldolase - IPTG isopropyl -d-thiogalactoside - GST glutathione S-tranferase - PBS phosphate-buffered saline - TPI triosephosphate isomerase     

An assessment of the annual mass balance of carbon,nitrogen, and phosphorus in Narragansett Bay

Narragansett Bay is a relatively well-mixed, high salinity coastal embayment and estuary complex in southern New England (USA). Much of the shoreline is urban and the watershed is densely developed. We have combined our data on C, N, and P inputs to this system, on C, N, and P accumulation in the sediments, and on denitrification with extensive work by others to develop approximate annual mass balances for these elements. The results show that primary production within the bay is the major source of organic carbon (4 times greater than other sources), that land drainage and upstream sewage and fertilizer are the major sources of N, and that landward flowing bottom water from offshore may be a major source of dissolved inorganic phosphorus. Most of the nutrients entering the bay arrive in dissolved inorganic form, though DON is a significant component of the N carried by the rivers. About 40% of the DIN in the rivers is in the form of ammonia. Sedimentation rates are low in most of Narragansett Bay, and it appears that less than 20% of the total annual input of each of these elements is retained within the system. A very small amount of C, N, and P is removed in fisheries landings, denitrification in the sediments removes perhaps 10–25% of the N input, and most of the carbon fixed in the system is respired within it. Stoichiometric calculations suggest that some 10–20% of the organic matter formed in the bay is exported to offshore and that Narragansett Bay is an autotrophic system. Most of the N and P that enters the bay is, however, exported to offshore waters in dissolved inorganic form. This assessment of the overall biogeochemical behavior of C, N, and P in the bay is consistent with more rigorously constrained mass balances obtained using large living models or mesocosms of the bay at the Marine Ecosystem Research Laboratory (MERL).     

Effects of pasture introduction on soil CO2 emissions during the dry season in the state of Rondônia,Brazil

Soil CO₂ evolution rates, soil temperatures and moisture were measured during the dry season in two forest-to-pasture chronosequences in Rondônia, Brazil. The study included pastures ranging from 3 to 80 years-old. Mean dry-season CO₂ evolution from the forest in chronosequence 1, 88.8 mg CO₂-C m^–2h^–1 was lower than from the pastures which ranged from 111 to 158 mg CO₂-C m^–2h^–1. We found that temperature was not a good predictor of CO₂ emissions from pasture but that there was a significant relationship (r = 0.72,p < 0.05) between soil moisture and pasture emissions. The ¹³C of the soil CO₂ emissions also was measured on chronosequence I; ¹³C of the CO₂ emitted from the C3 forest was –29.43%. Pasture¹³CO₂ values increased from –17.91%. in the 3 year-old pasture to –12.86% in the 80 year-old, reflecting the increasing C₄ inputs with pasture age. Even in the youngest (3 year-old) pasture, 70 percent of the CO₂ evolved originated from C₄ pasture-derived carbon.     

Effects of manipulation of food supply on estuarine meiobenthos

A comparative mesocosm experiment was carried out to determine the effects of natural foods of different quality and quantity on the structure of natural meiobenthic communities collected in undisturbed sediment from the polluted Westerschelde and the comparatively undisturbed Gironde estuaries. Nematode communities are more diverse and species rich in the latter estuary. The organic matter or foods used were phytoplankton, green alga, salt marsh plant detritus and leaf litter detritus which were added at three dose rates including a high dose. There was no change in community structure in response to the treatments in either of the estuarine meiobenthic communities. Analysis of all the results from this experiment indicate that the food quantity manipulations had almost no effect on the deposit feeding meiofauna. It may be that the reserves of organic matter within the sediment were sufficient to satisfy their dietary requirements for the duration of the experiment. The abundance of diatom/epigrowth feeding nematodes which were initially dominant in the Gironde, declined substantially suggesting that they may have been food limited since diatoms were not among the sources of organic matter added to the mesocosm. There was no specific response to the five different types of organic matter added to the mesocosm     

Carbon flows in the Westerschelde estuary (The Netherlands) evaluated by means of an ecosystem model (MOSES)

The autotrophic production and heterotrophic consumption of organic matter in the Westerschelde, a highly turbid and eutrophic estuary in the Southwest Netherlands is examined by means of a dynamic simulation model. The model describes the ecologically relevant processes in thirteen spatial compartments and adequately fits most observed data.Three autotrophic processes are included in the model. Net pelagic photosynthetic production is relatively low (average 41 gC m^–2 yr^–1) and three spatial compartments near the turbidity maximum zone are respiratory sinks of phytoplankton biomass. According to the model, net phytobenthic primary production is more important than pelagic primary production in the upstream half of the Westerschelde. On the scale of the entire estuary, benthic primary production amounts to about 60% of pelagic primary production. Water-column nitrification, which is very important in the nitrogen cycle, is most pronounced near the turbidity zone where it accounts for the major autotrophic fixation of carbon (up to 27 g C m^–2 yr^–1). Viewed on the scale of the total estuary, however, the process is not very important.Less than 20% of total organic carbon input to the estuary is primary produced, the remainder is imported from waste discharges and from the river.The degree of heterotrophy of the Westerschelde estuary proved to be one of the highest yet reported. On average 380 g carbon per square metre is net lost per year (range 200–1200 gC m^–2 yr^–1). The yearly community respiration (bacterial mineralization, respiration of higher trophic levels and sedimentation) is 4 to 35 times (estuarine mean of 6) higher than the net production. This degree of heterotrophy is highest near the turbidity maximum and generally decreases from the freshwater to the seaward boundary. About 75% of all carbon losses can be ascribed to pelagic heterotrophic processes; the sediment is only locally important.Mineralisation rates are highest in the turbidity region, but as only a fraction of total carbon resides here, less than 20% of all organic carbon is lost in this part of the estuary. This result is in contradiction with a previous budget of the estuary, based on data of the early seventies, where more than 80% of all carbon was estimated to be lost in the turbidity zone. Part of this discrepancy is probably caused by changes that have occurred in the estuary since that time.Due to the high heterotrophic activity, nearly all imported and in situ produced carbon is lost in the estuary itself and the Westerschelde is an insignificant source of organic matter to the coastal zone.The model estuary acts as a trap for reactive organic matter, both from the land, from the sea or in situ produced. Internal cycling, mainly in the water column, results in the removal of most of the carbon while the more refractory part is exported to the sea.