A Model for Sheath Formation Coupled to Motility in Leptothrix ochracea

Optical and atomic force microscopy (AFM) of naturally occurring Leptothrix ochracea was used to study the fine structure of sheaths and cells. Morphology of young sheaths suggests the scaffold chains have strong self-adhesion. Evidence from unencapsulated cells indicates fresh scaffold production through cell walls. Simple diffusion arguments are used to explain the morphology of the sheath structure. We propose a novel cell motility model based on previously published video data, our AFM images of naked cells, and simple flow calculations. The model indicates that motility results from differential shear forces resulting from extrusion of sheath material that passively pushes a filament of connected cells forward as the surrounding sheath material hardens behind the cell train.     

基于目标颜色基及梯度方向匹配的菌落分割计数算法

【目的】通过菌落测试片提取菌落并计数,在农业、食品业、医疗卫生等领域中是一项常用且重要的工作。目前,菌落自动计数算法大都是以菌落培养皿为主要工作对象,对菌落测试片适用性较差。另外,目前相关技术在常规的粘连物体分割中有着较好的效果,但在菌落分割计数中,由于菌落本身的形态特征,对粘连菌落分割计数的效果尚不够精准。【方法】为解决此类问题,本文提出一种基于目标颜色基及梯度方向匹配的菌落分割计数算法。首先利用图像中菌落的颜色特征作为基,将图像转换到基空间内,以增强菌落与背景之间的差异,其次利用菌落图像的梯度幅值特征对梯度方向进行滤波,然后通过梯度方向进行匹配,进而将粘连的菌落分割,最后利用非极大值抑制的方法筛选出菌落并计数。【结果】经试验,本研究算法的计数精度可达98.00%,能够满足实际需求。【结论】在针对菌落的目标分割计数中,本研究算法不仅计数精度高,而且具有较好的鲁棒性,在对不同厂家的菌落总数测试片菌落分割计数中均有优异效果;然而在对大面积目标的检测分割中算法的准确率会有所下降,因此,该算法更适合于菌落等小目标的检测分割。     

非水虻源微生物与武汉亮斑水虻幼虫联合转化鸡粪的研究

【目的】益生微生物在协助亮斑扁角水虻幼虫转化有机废弃物、提高其转化效率方面具有重要的作用,本研究针对非水虻源微生物,开展与水虻联合转化鸡粪的研究,以阐明外源微生物在水虻转化畜禽粪便中的作用,对其转化机制的研究及产业化生产具有重要意义。【方法】采用稀释涂平板的方法进行鸡粪堆肥和猪粪堆肥中细菌的分析,并将筛选到的细菌分别接种到无菌的鸡粪基质中与武汉亮斑水虻幼虫联合转化,通过称重法测定转化后武汉亮斑水虻及鸡粪的重量,评价转化效果及对幼虫的影响,然后将促进转化效果明显的菌株按不同比例进行复配,与武汉亮斑水虻幼虫联合转化新鲜鸡粪,分析复配菌剂对武汉亮斑水虻幼虫转化鸡粪的影响。【结果】结果显示R-07、R-09、F-03和F-06在促进武汉亮斑水虻幼虫生长和鸡粪转化的效果上最为显著。与对照组相比,水虻幼虫转化率分别提高了27.21%、15.00%、9.93%和16.29%;基质减少率分别提高了17.94%、10.42%、7.84%和9.27%。将这4株细菌配制复配菌剂与武汉亮斑水虻幼虫联合转化鸡粪,结果显示复配比例为R-07:R-09:F-03:F-06=4:1:1:1时效果最好,与空白对照相比,武汉亮斑水虻幼虫存活率提高了10.25%,幼虫虫重增加了28.41%,幼虫转化率增加了30.46%,鸡粪减少率增加了7.69%。【结论】添加通过筛选优化的非水虻来源的微生物复合菌剂能够促进水虻高效转化鸡粪,研究结果有助于改善现有的武汉亮斑水虻幼虫转化体系,为开发新型的联合转化工艺、更加有效地处理畜禽粪便奠定基础。     

Microbial production of lactic acid: the latest development

Lactic acid is an important platform chemical for producing polylactic acid (PLA) and other value-added products. It is naturally produced by a wide spectrum of microbes including bacteria, yeast and filamentous fungi. In general, bacteria ferment C5 and C6 sugars to lactic acid by either homo- or hetero-fermentative mode. Xylose isomerase, phosphoketolase, transaldolase, l- and d-lactate dehydrogenases are the key enzymes that affect the ways of lactic acid production. Metabolic engineering of microbial strains are usually needed to produce lactic acid from unconventional carbon sources. Production of d-LA has attracted much attention due to the demand for producing thermostable PLA, but large scale production of d-LA has not yet been commercialized. Thermophilic Bacillus coagulans strains are able to produce l-lactic acid from lignocellulose sugars homo-fermentatively under non-sterilized conditions, but the lack of genetic tools for metabolically engineering them severely affects their development for industrial applications. Pre-treatment of agriculture biomass to obtain fermentable sugars is a pre-requisite for utilization of the huge amounts of agricultural biomass to produce lactic acid. The major challenge is to obtain quality sugars of high concentrations in a cost effective-way. To avoid or minimize the use of neutralizing agents during fermentation, genetically engineering the strains to make them resist acidic environment and produce lactic acid at low pH would be very helpful for reducing the production cost of lactic acid.     

Finding A Niche for Soil Microbial Toxicity Tests in Ecological Risk Assessment

Soil microbial toxicity tests are seldom used in ecological risk assessments or in the development of regulatory criteria in the U.S. The primary reason is the lack of an explicit connection between these tests and assessment end-points. Soil microorganisms have three potential roles with respect to ecological assessment endpoints: properties of microbial communities may be end-points; microbial responses may be used to estimate effects on plant production; and microbial responses may be used as surrogates for responses of higher organisms. Rates of microbial processes are important to ecosystem function, and thus should be valued by regulatory agencies. However, the definition of the microbial assessment endpoint is often an impediment to its use in risk assessment. Decreases in rates are not always undesirable. Processes in a nutrient cycle are particularly difficult to define as endpoints, because what constitutes an adverse effect on a process is dependent on the rates of others. Microbial tests may be used as evidence in an assessment of plant production, but the dependence of plants on microbial processes is rarely considered. As assessment endpoints are better defined in the future, microbial ecologists and toxicologists should be provided with more direction for developing appropriate microbial tests.     

海洋微生物裂解二甲基巯基丙酸内盐(DMSP)的酶促催化机制

二甲基巯基丙酸内盐(dimethylsulfoniopropionate,DMSP)是全球硫循环和碳循环的重要载体物质。海洋浮游植物、大型藻类和临海被子植物是DMSP的主要生产者。每年DMSP的产量可以达到1×10~9吨。在北大西洋表面的某些区域,DMSP的产量可以达到碳固定总量的10%。微生物介导的DMSP的裂解是全球硫循环和碳循环的重要步骤。目前,8种参与裂解DMSP的DMSP裂解酶已被报道。在已发现的8种DMSP裂解酶中,3种DMSP裂解酶的催化机制得到了研究和阐明。本文根据国内外研究成果,主要对DMSP裂解过程的酶促催化机制的研究进展进行综述,认为在今后工作中需要继续发现新的DMSP裂解酶,并进一步揭示海洋微生物裂解DMSP的分子机制。     

絮凝方法收集产氨短杆菌MA-2、黄色短杆菌MA-3条件的优化

采用壳聚糖作絮凝剂收集富含延胡索酸酶活力的产氨短杆菌MA-2、黄色短杆菌MA-3。研究了絮凝剂加入量及加入时混合方式与时间等因素对延胡索酸酶活力及分离效果的影响,并对壳聚糖絮凝收集产氨短杆菌MA-2、黄色短杆菌MA-3的过程进行了初步分析。     

土壤生物多样性与微量气体(CO2、CH4、N2O)代谢

土壤生物是重要的基因库 ,土壤生物多样性是全球生物多样性的重要组成部分。土壤生物是C、N地球化学过程 (土壤库 )的驱动者 ,调控微量气体代谢。在微量气体代谢中 ,土壤微生物具有直接的作用。真菌、CH4 生成菌、CH4 氧化菌、硝化菌以及反硝化菌等是调控微量气体代谢的关键生态功能类群。由于相对大的体积和强大的酶化学分解作用 ,真菌通常主导枯枝落叶的分解活动。“通气—厌气”界面是微生物群落的活跃区域 ,易发生微量气体代谢。“有机—无机”过渡层、水生植物根际区、土壤动物肠道系统是典型的微量气体代谢界面。土壤动物对微量气体代谢的作用通常为前期的和间接的 ,并且又是重要的。节肢动物 (白蚁 )和环节动物 (蚯蚓 )是分别代谢CH4 和N2 O的两个关键性生态功能类群。在研究土壤生物多样性及其对微量气体代谢的作用方面 ,由于土壤生态系统的复杂性 ,需综合传统微生物实验技术与现代同位素技术和分子生物学技术。我国缺乏研究土壤生物多样性及其对微量气体代谢影响的实质性工作 ,有必要开展这方面的研究。     

曾候乙墓穴木椁微生物的分离与鉴定

从曾侯乙墓中椁室、东椁室、西椁室和北椁室分别取样,经平板划线培养,分离,纯化共获得典型的菌株16株。将16株分别涂片镜检,生理生化分析鉴定,结果证明芽孢杆菌属11株,其中苏云金变种1株,地衣芽孢杆菌1株,巨大芽孢杆菌1株,球形芽孢杆菌5株,蜡状芽孢杆菌2株,多粘芽孢杆菌1株。其余菌株微杆菌属4株,黄色杆菌属黄杆菌1株。