Development and Application of Microsatellites in Candidate Genes Related to Wood Properties in the Chinese White Poplar (Populus tomentosa Carr.)

Gene-derived simple sequence repeats (genic SSRs), also known as functional markers, are often preferred over random genomic markers because they represent variation in gene coding and/or regulatory regions. We characterized 544 genic SSR loci derived from 138 candidate genes involved in wood formation, distributed throughout the genome of Populus tomentosa, a key ecological and cultivated wood production species. Of these SSRs, three-quarters were located in the promoter or intron regions, and dinucleotide (59.7%) and trinucleotide repeat motifs (26.5%) predominated. By screening 15 wild P. tomentosa ecotypes, we identified 188 polymorphic genic SSRs with 861 alleles, 2–7 alleles for each marker. Transferability analysis of 30 random genic SSRs, testing whether these SSRs work in 26 genotypes of five genus Populus sections (outgroup, Salix matsudana), showed that 72% of the SSRs could be amplified in Turanga and 100% could be amplified in Leuce. Based on genotyping of these 26 genotypes, a neighbour-joining analysis showed the expected six phylogenetic groupings. In silico analysis of SSR variation in 220 sequences that are homologous between P. tomentosa and Populus trichocarpa suggested that genic SSR variations between relatives were predominantly affected by repeat motif variations or flanking sequence mutations. Inheritance tests and single-marker associations demonstrated the power of genic SSRs in family-based linkage mapping and candidate gene-based association studies, as well as marker-assisted selection and comparative genomic studies of P. tomentosa and related species.     

不同土壤水分处理对水稻光合特性及产量的影响

为探明土壤水分对水稻生长发育的影响机理,以武香粳14和两优培九为试验材料,分析了不同土壤水分处理下(W1、W2、W3和CK分别表示土壤体积含水量为20%、30%、40%和5cm水层灌溉)的水稻光合特性、产量及水分生产率等。结果表明,轻度水分胁迫(W3)具有处理间最大的叶片气孔导度、蒸腾速率和净光合速率,其他处理规律不显著。灌浆初期各水分处理下叶位间光合指标均表现为:剑叶＞顶2叶＞顶3叶>顶4叶,其他生育期规律不显著。与对照处理(CK)相比,武香粳14的W1、W2和W3处理的产量分别减少61.14%和29.13%、增加0.96%,水分生产率分别减少10.69%、增加1.53%和20.61%;两优培九的产量分别减少64.11%和28.76%,增加2.08%,水分生产率分别减少16.39%,增加2.46%和22.13%。研究结果为水稻精确灌溉和节水生产提供了技术支撑。     

基于CSSL的高密度物理图谱定位水稻分蘖角度QTL

对以籼稻9311为遗传背景携带粳稻日本晴基因组的染色体片段置换系（CSSL）的遗传图谱进行分子标记加密,构建了含250个多态标记的高密度物理图谱。以119个CSSLs为材料,P≤0.001为阈值,筛选到分蘖角度与受体亲本9311差异极显著的10个系。结合物理图谱和代换作图方法,共鉴定出5个分蘖角度QTL,其中qTA11的加性效应表现为增效作用,来源于9311的等位基因;其余4个QTL的加性效应为减效作用,均来源于日本晴的等位基因。qTA6-1和qTA6-2分别被定位于第6染色体RM253–RM527之间的3.55Mb区段和RM3139–RM494的1.65Mb区间;qTA9被定位于第9染色体RM257–RM189之间的3.40Mb区段;qTA10被定位在第10染色体RM222–S10-1之间的2.10Mb区段;qTA11被定位于第11染色体RM1761–RM4504之间的3.30Mb区间。以上研究结果为水稻分蘖角度QTL的精细定位和株型育种提供了依据。     

CARBON FIXATION IN CULTURED MARINE BENTHIC DIATOMS1

The enzyme activity of ribulose 1, 5-bisphosphate carboxylase-oxygenase (RuBisCO) and phosphoenolpyruvate carboxylase (PEPC) was measured in four species of marine benthic diatoms isolated from subtidal sediments of Graveline Bayou, Mississippi. Enzyme activities were measured in cultures of Amphora micrometra Giffen, A. tenerrima Aleem and Hustedt, Nitzschia fontifuga Cholnoky, and Nitzschia vermicularis Grunow that were grown at light levels supporting μ_max and at light-limiting irradiances. All four species exhibited similar RuBisCO: PEP ratios (range = 1–1.8) at μ_max the lowest ratio (0.4) was observed in A. micrometra. Reduced light levels increased PEPC relative to that measured at μ_max in two species. Two-dimensional paper chromatography was used to determine the first products of carbon fixation in A. micrometra After a 15 s incorporation period, the first product of photosynthetic carbon fixation was 3-phosphoglycerate even though this alga had a PEPC activity that was three times higher than that of RuBisCO. After 30 s, over 50% of the recovered radioactivity was still in this compound. Stable carbon isotope analyses of a mixture of the four pennate diatoms also suggest the predominant carbon fixation pathway in these benthic diatoms was similar to C3 plants.     

钾营养对扬花期小麦旗叶光合速率日变化的影响

在田间栽培条件下,小麦旗叶的气孔导度、净光合速率与钾之间呈显著的正相关.钾可减少由于光合“午睡“造成的26.5%～37%的光合产量损失.     

Quantitative genetics of growth and development in Populus. I. A three-generation comparison of tree architecture during the first 2 years of growth

One approach to gain an insight into the genetics of tree architecture is to make use of morphologically divergent parents and study their segregating progeny in the F₂ and backcross (B₁) generations. This approach was chosen in the present study in which material of a three-generation pedigree growing side by side in a replicated plantation, was analyzed. The pedigree included Populus trichocarpa (T) and P. deltoides (D) parents, their F₁ and F₂ hybrids and their B₁ hybrids to the D parent. The trees were grown in the environment of the T parent and measured for the first 2 years of growth. Nine quantitative traits were studied at the stem, branch and leaf levels of tree architecture, in which the original parents differed. Strong F₁ hybrid vigor relative to the better parent (T) was expressed in growth and its components. Most quantitative traits in the F₂ and B₁ hybrids were intermediate between the T and D parents but displayed a wide range of variation due to segregation. The results from the analysis of variance indicated that all morphometric traits were significantly different among F₂ and B₁ clones, but the B₁ hybrids were more sensitive to replicates than the F₂. Broad-sense heritabilities (H ²) based on clonal means ranged from moderately high to high (0.50–0.90) for the traits studied, with H ² values varying over age. The H ² estimates reflected greater environmental noise in the B₁ than in the F₂, presumably due to the greater proportion of maladaptive D alleles in those hybrids. In both families, sylleptic branch number and length, and leaf size on the terminal, showed strong genetic correlations with stem growth. The large divergence between the two original parents in the traits studied, combined with the high chromosome number in Populus (2n=38), makes this pedigree well suited for the estimation of the number of quantitative trait loci (QTLs) underlying quantitative variation by Wright's biometric method (1968). Variation in several traits was found to be under the control of surprisingly few major QTLs: 3–4 in 2nd-year height and diameter growth, a single QTL in stem diameter/height ratio.     

Evolutionary dynamics of ecological niche in three Rhinogobio fishes from the upper Yangtze River inferred from morphological traits

In the past decades, it has been debated whether ecological niche should be conserved among closely related species (phylogenetic niche conservatism, PNC) or largely divergent (traditional ecological niche theory and ecological speciation) and whether niche specialist and generalist might remain in equilibrium or niche generalist could not appear. In this study, we employed morphological traits to describe ecological niche and test whether different niche dimensions exhibit disparate evolutionary patterns. We conducted our analysis on three Rhinogobio fish species (R. typus, R. cylindricus, and R. ventralis) from the upper Yangtze River, China. Among the 32 measured morphological traits except body length, PCA extracted the first four principal components with their loading scores >1.000. To find the PNC among species, Mantel tests were conducted with the Euclidean distances calculated from the four principal components (representing different niche dimensions) against the pairwise distances calculated from mitochondrial cytochrome b sequence variations. The results showed that the second and the third niche dimension, both related to swimming ability and behavior, exhibited phylogenetic conservatism. Further comparison on niche breadth among these three species revealed that the fourth dimension of R. typus showed the greatest width, indicating that this dimension exhibited niche generalism. In conclusion, our results suggested that different niche dimensions could show different evolutionary dynamic patterns: they may exhibit PNC or not, and some dimensions may evolve generalism.     

优良单株家系辣木叶的表型性状分析

为挖掘辣木(Moranga oleifera)优良种质资源,对30个优良单株家系的叶片表型性状进行研究。结果表明,除叶形外,辣木不同家系间的叶柄和叶片颜色、复叶数、复叶柄长度和直径、复叶间距、叶长、叶宽均存在不同程度的差异。复叶数与复叶柄长度和直径、复叶间距、叶长、叶宽呈极显著正相关;主成分分析表明,叶长、叶宽、复叶柄长度和直径、复叶间距、叶柄和叶片颜色是区分辣木不同家系最主要的叶片性状指标。聚类分析结果表明,30个辣木家系可分为3大类,叶片表型性状存在显著差异的家系的遗传距离较远。因此,叶柄和叶片颜色、复叶数、复叶柄长度和直径、复叶间距、叶长、叶宽将为直观区分辣木家系提供参考。     

铜绿假单胞菌对镉胁迫苗期水稻根系活力及叶片生理特性的影响

为揭示耐镉铜绿假单胞菌缓解镉胁迫水稻的生理效应,以无镉处理为对照,通过添加菌液、空载体、菌剂及20μmol·L^-1 Cd进行水培试验,分析了菌株对苗期水稻根系活力及叶片生理特性的影响.结果表明:镉胁迫显著抑制了水稻的根系活力,降低了叶片光合效率、抗氧化酶活性及可溶性蛋白、类黄酮与总酚含量,提高了叶片丙二醛(MDA)和超氧阴离子(O2-)含量.与镉处理相比,添加菌液、菌剂处理的水稻根系活力分别提高了36.1%~42.5%、49.4%~53.0%;叶片净光合速率提高了118.5%~147.1%、137.6%~156.9%;可溶性蛋白含量提高了37.0%~49.3%、37.7%~72.6%.菌剂处理的水稻叶片超氧化物歧化酶(SOD)、过氧化物酶(POD)、过氧化氢酶(CAT)活性分别比Cd处理提高了36.9%~42.6%、82.7%~92.6%、43.3%~52.2%,菌液处理的SOD、POD、CAT则分别比Cd处理提高了25.8%~36.6%、40.9%~55.9%、24.0%~29.2%,菌剂对水稻叶片抗氧化酶的促进效应显著高于菌液;菌剂、菌液处理的水稻叶片MDA含量分别比Cd处理降低了44.8%~54.7%、29.4%~41.9%;O2-含量减少了9.9%~10.2%、3.0%~7.1%;菌剂处理后类黄酮、总酚含量分别比Cd处理提高了125.4%~135.7%、100.8%~119.4%;菌液处理后则分别提高了139.4%~146.7%、115.0%~134.7%.可见,铜绿假单胞菌及其菌剂通过提高苗期水稻根系活力、光合作用促进了苗期水稻的生长.铜绿假单胞菌通过增强水稻抗氧化酶活性、提高类黄酮和总酚等抗氧化物质含量,表现出显著的缓解镉胁迫效应.