A two-stage model for multiple time series data of counts

We propose a two-stage model for time series data of counts from multiple locations. This method fits first-stage model(s) using the technique of iteratively weighted filtered least squares (IWFLS) to obtain location-specific intercepts and slopes, with possible lagged effects via polynomial distributed lag modeling. These slopes and/or intercepts are then taken to a second-stage mixed-effects meta-regression model in order to stabilize results from various locations. The representation of the models from the stages into a combined mixed-effects model, issues of inference and choices of the parameters in modeling the lag structure are discussed. We illustrate this proposed model via detailed analysis on the effect of air pollution on school absenteeism based on data from the Southern California Children's Health Study.     

Characterizing man-made and natural modifications of microbial diversity and activity in coastal ecosystems

The impacts of growing coastal pollution and habitat alteration accompanying human encroachment are of great concern at the microbial level, where much of the ocean's primary production and biogeochemical cycling takes place. Coastal ecosystems are also under the influence of natural perturbations such as major storms and flooding. Distinguishing the impacts of natural and human stressors is essential for understanding environmentally-induced change in microbial diversity and function. The objective of this paper is to discuss the applications and merits of recently developed molecular, ecophysiological and analytical indicators and their utility in examining anthropogenic and climatic impacts on the structure and function of coastal microbial communities. The nitrogen-limited Neuse River Estuary and Pamlico Sound, North Carolina are used as examples of ecosystems experiencing both anthropogenic (i.e., accelerating eutrophication) and climatic stress (increasing frequencies of tropical storms and hurricanes). Additional examples are derived from a coastal monitoring site (LEO) on the Atlantic coast of New Jersey and Galveston Bay, on the Gulf of Mexico. In order to assess structure, function, and trophic state of these and other coastal ecosystems, molecular (DNA and RNA-based) characterizations of the microbial taxa involved in carbon, nitrogen and other nutrient transformations can be combined with diagnostic pigment-based indicators of primary producer groups. Application of these methods can reveal process-level microbial community responses to environmental variability over a range of scales. Experimental approaches combined with strategic monitoring utilizing these methods will facilitate: (a) understanding organismal and community responses to environmental change, and (b) synthesizing these responses in the context of ecosystem models that integrate physical, chemical and biotic variability with environmental controls. This revised version was published online in August 2006 with corrections to the Cover Date.     

Metagenomic insights into microbial metabolism affecting arsenic dispersion in Mediterranean marine sediments

Microorganisms dwelling in sediments have a crucial role in biogeochemical cycles and are expected to have a strong influence on the cycle of arsenic, a metalloid responsible for severe water pollution and presenting major health risks for human populations. We present here a metagenomic study of the sediment from two harbours on the Mediterranean French coast, l'Estaque and St Mandrier. The first site is highly polluted with arsenic and heavy metals, while the arsenic concentration in the second site is below toxicity levels. The goal of this study was to elucidate the potential impact of the microbial community on the chemical parameters observed in complementary geochemical studies performed on the same sites. The metagenomic sequences, along with those from four publicly available metagenomes used as control data sets, were analysed with the RAMMCAP workflow. The resulting functional profiles were compared to determine the over‐represented Gene Ontology categories in the metagenomes of interest. Categories related to arsenic resistance and dissimilatory sulphate reduction were over‐represented in l'Estaque. More importantly, despite very similar profiles, the identification of specific sequence markers for sulphate‐reducing bacteria and sulphur‐oxidizing bacteria showed that sulphate reduction was significantly more associated with l'Estaque than with St Mandrier. We propose that biotic sulphate reduction, arsenate reduction and fermentation may together explain the higher mobility of arsenic observed in l'Estaque in previous physico‐chemical studies of this site. This study also demonstrates that it is possible to draw sound conclusions from comparing complex and similar unassembled metagenomes at the functional level, even with very low sequence coverage.     

Environmental Pollution and Relationship Between Total Antioxidant Capacity and Heavy Metals (Pb,Cd, Zn,Mn, and Fe) in Solanum tuberosum L. and Allium cepa L.

In the natural environment, plants are exposed to different stress factors that are responsible for overproduction of reactive oxygen species. Exposure to heavy metals is one of these factors. The present article highlights the correlation between the effects of bioaccumulation of heavy metals in a highly polluted region as the industrial zone of the Thermo Power Plants “Kosova” in Kosovo on the antioxidant capacity of two selected target species: Solanum tuberosum L. and Allium cepa L. The results show that environmental pollution in the industrial zone of the Thermo Power Plants “Kosova” generates a significant bioaccumulation of heavy metals such as Pb, Cd, Zn, Mn, and Fe. The high concentration of heavy metals leads to an increased production of reactive radical species. The extracts of target plants cultivated in this region display a lower antioxidant capacity than the same plants grown in a control rural area. The Fe bioaccumulation markedly influences the antioxidant capacity of plant samples analyzed.     

Recent evolution of sedimentary heavy metals in a coastal lagoon contaminated by industrial wastewaters (Pialassa Baiona,Ravenna, Italy)

From 2000 to 2002, sediment contamination by Cd, Cu, Hg, Pb and Zn was analysed in the Pialassa Baiona salt marsh, which receives petrochemical wastewaters from the industrial district of Ravenna (Italy). The recent contamination levels were compared with data of previous studies carried out in 1982, in order to assess whether environmental policies and remedial measures reduced sediment pollution. Sedimentary profiles of Cu and Pb were homogeneous along the uppermost 0–10 cm horizon, which corresponded to the sedimentation in the last 30 years. Concentrations of Zn attained a peak (up to 800 mg kg⁻¹ dry weight) in the 0–4 cm sediment horizon, which was assumed to correspond to the last 10–15 years. A wide-spread contamination by Hg was detected in the salt marsh as well as in the main channel with peaks up to 20–40 mg kg⁻¹ dry weight. Nonetheless, recent sediments resulted less contaminated, since Hg discharge from industrial plants ceased about 20 years ago. Contamination levels by Hg values were two orders of magnitude higher than the international sediment quality standards. Cadmium, which was analysed for the first time in 2000–2002, attained a peak in the surface layers (1–2.5 mg kg⁻¹ d.w.), with a progressive decline along the sediment column. Through comparison with pre-industrial values detected in the deeper sediment horizons (before 1920), Hg showed the highest enrichment factor, up to 300 times. Cd and Zn concentrations in recent sediments were from 2 to 10 times higher than background values. In terms of possible adverse effects, Hg posed the highest risk, and Cd and Zn were frequently above the recommended thresholds.     

Analysis of vertical ozone and nitrogen oxides profiles in aPrunus cerasifera canopy

An automatic system was installed for continuous analyses of ozone, sulphur dioxide, nitrogen monoxide and nitrogen dioxide in an experimental orchard with a canopy ofPrunus cerasifera plants in summer 1993. Air samples from three elevations (0.8 m, 1.6 m and 3 m above ground) were sequentially analyzed. Ozone concentrations above the canopy were usually higher than within the canopy; their relationships with stomatal resistance have been investigated. Sulphur dioxide levels were negligible. Nitrogen oxides showed a complex profile, with no particular trend, likely due to a reciprocal exchange between the atmosphere and the ground surface.     

Palaeoecological and phytosociological reconstruction of precultural vegetation in the Bílý Kříž area,the Moravskoslezské Beskydy Mts,Slovak Republic

A combined palynological and phytosociological methodological approach was used in the reconstruction of precultural forest vegetation in a small model area of Bílý Kí-Janík in the Moravskoslezské Beskydy mountains (northwest Slovakia). Two pollen diagrams show the predominance of Fagus sylvatica, Abies alba and Picea abies in past natural mixed forests. The present-day occurrence and distribution of forest herbs allow the differentiation of five past vegetation types with above mentioned forest climax trees covering the area before the beginning of human interference. A map of reconstructed natural vegetation is presented which can be used for revitalization of present secondary spruce plantations, heavily affected by air pollution.     

Role of heterotrophic nitrifiers and aerobic denitrifiers in simultaneous nitrification and denitrification process: a nonconventional nitrogen removal pathway in wastewater treatment

Bacterial species capable of performing both nitrification and denitrification in a single vessel under similar conditions have gained significance in the wastewater treatment scenario considering their unique character of performing the above reactions under heterotrophic and aerobic conditions respectively. Such a novel strategy often referred to as simultaneous nitrification and denitrification (SND) has a tremendous potential in dealing with various wastewaters having low C : N content, considering that the process needs very little or no external carbon source and oxygen supply thus adding to its cost-effective and environmentally friendly nature. Though like other micro-organisms, heterotrophic nitrifiers and aerobic denitrifiers convert inorganic or organic nitrogen-containing substances into harmless dinitrogen gas in the wastewater, their ecophysiological role in the global nitrogen cycle is still not fully understood. Attempts to highlight the role played by the heterotrophic nitrifiers and aerobic denitrifiers in dealing with nitrogen pollution under various environmental operating conditions will help in developing a mechanistic understanding of the SND process to address the issues faced by the traditional methods of aerobic autotrophic nitrification–anaerobic heterotrophic denitrification.     

应对气候和生态环境危机促进全球可持续发展——UNEP与自然和谐共处报告简述

2021年2月18日,联合国环境署发布《与自然和谐共处：应对气候、生物多样性和污染危机的科学蓝图》。报告指出：气候变化、生物多样性下降和环境污染已经成为全球三大环境紧急情况;人与自然关系面临着社会经济发展压力加剧环境风险、遏制环境恶化的全球承诺尚未兑现、环境风险威胁可持续发展目标等多重挑战;全球亟需开展以联合国可持续发展目标为框架的系统变革,加快应对全球环境危机的重点行动,改革资源环境和经济系统,提高粮食、能源和水系统的环境友好性与可持续性,加强对人体健康与生态环境健康的协同保护,进而推动人与自然的和谐共处以及可持续发展。该报告结合全球环境评估的最新进展,强调了社会-经济-环境可持续发展仍是未来的重要研究课题,对我国社会-生态系统与可持续发展等领域的科学研究有如下启示：（1）创新社会-生态系统的综合集成研究,探寻不同发展路径和气候变化情景下社会-生态系统时空演变特征与趋势;（2）注重科学研究对决策的支撑以及与国际重大议程的衔接,探索和创新可持续发展的中国方案。