Evolutionary analysis of the picornavirus family

An exhaustive evolutionary analysis of the picornavirus family has been carried out using the amino acid sequences of several proteins of the viruses including: the capsid proteins (1D, 1B, and 1C) situated at the 5 end of the genome and responsible for the serotype of the viruses, and the viral polymerase (3D), located at the 3 end of the genome. The evolutionary relationships found among the viruses studied support the new classification, recently suggested, in contrast to the classical one, and the existence of a new genus for the picornavirus family. In the new taxonomic organization, five genera form the picornavirus family: (1) aphthoviruses, (2) cardioviruses, (3) hepatoviruses (previously classified as enteroviruses), (4) renteroviruses (which mainly constitute a combination of the previous genera rhinovirus and enterovirus), and (5) a new genus, with a new and unique representative: the echovirus 22. Our analysis also allowed us, for the first time, to propose the most probable sequence of speciation events to have given rise to the current picornavirus family.The bootstrap procedure was used to check the reliability of the phylogenetic trees obtained. The application of the method of the statistical geometry in distance space to internal branches of the tree revealed a high degree of evolutionary noise, which makes the resolution of some internal branching points difficult. Correspondence to: J. Dopazo     

The modulation of membrane fluidity by hydrogenation processes. III. The hydrogenation of biomembranes of spinach chloroplasts and a study of the effect of this on photosynthetic electron transport

A method is reported for the in situ modification of the lipids of isolated spinach chloroplast membranes. The technique is based on a direct hydrogenation of the lipid double bonds in the presence of the catalyst, chlorotris(triphenylphosphine)rhodium (I). The pattern of hydrogenation achieved suggests that the catalyst distributes amongst all of the membranes. The polyunsaturated lipids within the membranes are hydrogenated at a faster rate and at an earlier stage than are the monoenoic lipids.Whilst addition of the catalyst to the chloroplast causes an initial 10–20% decrease in Hill activity, saturation of up to 40% of the double bonds present can be accomplished without causing further significant alterations in photosynthetic electron transport processes or marked morphological changes of the chloroplast structure as observed in the electron microscope.     

茶园冬季乔木落叶的分解和矿质元素释放

在我国南方存在着一种传统植茶方式——茶林复合生态系统,近年来人们已逐步认识到它在维持土壤肥力,抗御自然灾害和保证茶叶内质特性等方面的作用,然而对冬季乔木落叶分解和矿质元素释放的作用尚无报道。本文是对安徽省黄山市休宁县茶树-乌桕复合园和茶树-板栗复合园的冬季乔木落叶分解的研究,为全面认识茶林复合生态系统的性质提供依据。     

Senescence and decomposition of white clover stolons in grazed upland grass/clover swards

The fate of marked sections of stolons of white clover (Trifolium repens) over a 50-week period from May 1987 was followed in grazed grass/clover swards maintained at 5-cm sward surface height with and without N fertiliser. There was little effect of N treatment on the pattern of survival of stolon sections. The proportion of live stolons recovered decreased during the experiment, and in May 1988 on average only 29% of the marked sections remained alive. At all harvests only a small percentage of stolon sections showed signs of senescence; the maximum percentage, on average 20% of those marked, occurred in autumn, 15–20 weeks after marking. Following this period, i.e. in late autumn/winter, the most rapid increase in percentage of decomposed stolons was measured. Over 50% of stolon sections were buried within the 5-week period following marking and nearly all were buried after 20 weeks; generally a much smaller proportion of stolon tips was buried. Nutrient concentrations of N, P and K fell to their lowest levels in autumn, before increasing in the following spring. Results are discussed in relation to the cycling of nutrients via stolon senescence.     

Litter processing in diffuse and conduit springs

We used bedrock geology and prior water chemistry data to classify and choose 4 conduit and 4 diffuse flow springs in a karst region of southeast Minnesota. Decomposition processes and chemical/physical conditions were compared between spring classes during two seasons (May and September, 1987).Although large storms and conduit run-in events did not occur during our sampling, baseline water chemistry supported our a priori spring classification. Baseline nitrate and atrazine levels were significantly higher in conduit than in diffuse springs. During a minor run-in event, atrazine levels increased significantly to at least 1.2 µg L^–1 in all conduit systems, but remained unchanged in diffuse systems.Decay rates of the two predominant litter sources in the springs (watercress [Nasturtium officinale R.Br.] in May and box elder [Acer negundo L.] in September) were used to assess differences in biological activity between the spring classes. During May, watercress decayed (1 mm coarse mesh bags) at approximately the same rate in conduit and diffuse systems, k = 0.094 and 0.099 respectively. This result was unexpected since shredder colonization was much greater on litter bags in diffuse systems. In September, boxelder decay rate was significantly higher in diffuse (k = 0.018) than in conduit (k = 0.013) springs; and decay rates seemed to reflect significantly higher shredder colonization on bags in diffuse systems. Microbial activity on watercress and boxelder litter, measured as electron transport system (ETS) activity, was seldom significantly different between spring classes. Also, both watercress and boxelder litter decay rates for fine mesh bags (240µm) were similar between conduit and diffuse springs, suggesting that microbial processing did not differ greatly between spring classes.In conduit springs, low shredder colonization was apparently the result of low benthic shredder densities. Shredders and other macroinvertebrates may be adversely affected by discharge fluctuations from conduit run-in events. We suspect that, during times of low flow, watercress standing stock was also an important influence on shredder abundance.     

Transport and particle size distribution of suspended and benthic organic matter in three headwater streams

The breakdown and decomposition of two species of deciduous leaf litter, Fagus sylvatica L. and Salix viminalis L. and two species of aquatic macrophyte Isoetes lacustris L. and Potamogeton perfoliatus L. were examined in an oligotrophic lake. In all cases plant litter in coarse mesh litter bags lost significantly more material than the fine mesh after 1 years submergence in the lake. This however was considered to be the result of physical environmental factors and microbial activity rather than animal processing. The litter was ranked in order of fastest to slowest rates of decay as follows — Isoetes, Potamogeton, Salix and Fagus. Decomposition processes proceeded at a relatively slow rate as a result of low temperatures and low phosphate and mineral ion concentration. The results suggested that there was an accumulation of organic material in the lake.     

Organic acids from the anaerobic decomposition of Agropyron repens rhizomes

Phytotoxicity originating from the anaerobic decomposition of couch grass rhizomes has been studied. Short chain aliphatic (acetic, propionic and butyric) acids appear to be mainly responsible but hexanoic, succinic, phenylacetic, cinnamic, p-coumaric, 4-hydroxyphenylpropionic and 3,4-dihydroxyphenylpropionic acids are also present in the phytotoxic solutions formed during the decomposition.     

Reaction of forest soil microflora to environmental stress along a moderate pollution gradient next to an oil refinery

Twenty-five study sites were established along a 57-km-long transect in order to estimate the impact of an oil refinery, mainly emitting sulphur dioxide (24000 t yr⁻¹), on forest soil (F/H-horizon) chemistry and microbiology. The study demonstrated the existence of a pollution gradient which was best represented by the logarithm of the concentration of vanadium in the analyzed F/H soil layer. Of the soil microbial characteristics measured, including length of fungal hyphae, soil respiration, microbial biomass C and N, and percentage mass loss of Scots pine (Pinus sylvestris) needle litter, only fungal hyphal length was suppressed by the pollution load. No reduction in basic cations (Ca, Mg, K, and Na) in the F/H-horizon, or enrichment of soluble aluminum in the F/H-horizon of the Scots pine forest could be detected to result from the deposition.     

Radiation damage in the bulk and at the surface

The UK environmental e-science initiative supports the development and modification of simulation tools used to study radiation damage effects. We discuss the development and modification to the DL_POLY molecular dynamics (MD) code. Using the newly developed tools, we study the effects of radiation damage related to the safe encapsulation of highly radioactive materials, including nuclear waste. We address the possible differences between the radiation damage in the bulk and at the surface of a material, and perform MD simulations of energetic events in zircon structure. We find that in the case of readily amorphizable material, the formation of a stable alternative covalent network reduces the possible effect of the surface on the damaged structure.     

Goodness of Fit of Discriminant Functions from the Vector Space of Fixed Variates

Alternative proofs of some of KSHIRSAGAR's (1971) results on testing discriminant functions or canonical variables in the vector space of fixed variates are given. These results are derived in terms of the original variates unlike KSHIRSAGAR (1971) who derives the results by using random orthogonal transformations and triangular decompositions of the original matrix variates.