The diffusion model for migration and selection in a dioecious population

The diffusion approximation is derived for migration and selection at a multiallelic locus in a dioecious population subdivided into a lattice of panmictic colonies. Generations are discrete and nonoverlapping; autosomal and X-linked loci are analyzed. The relation between juvenile and adult subpopulation numbers is very general and includes both soft and hard selection; the zygotic sex ratio is the same in every colony. All the results hold for both adult and juvenile migration. If ploidy-weighted average selection, drift, and diffusion coefficients are used, then the ploidy-weighted average allelic frequencies satisfy the corresponding partial differential equation for a monoecious population. The boundary conditions and the unidimensional transition conditions for coincident discontinuities in the carrying capacity and migration rate extend identically. The previous unidimensional formulation and analysis of symmetric, nearest-neighbor migration of a monoecious population across a geographical barrier is generalized to symmetric migration of arbitrary finite range, and the transition conditions are shown to hold for a dioecious population. Thus, the entire theory of clines and of the wave of advance of favorable alleles is applicable to dioecious populations.This work was supported by National Science Foundation grant BSR-9006285     

The widespread naturalisation of Nymphaea hybrids is masking the decline of wild-type Nymphaea alba in Hesse,Germany

The genus Nymphaea has long been cherished for its ornamental value. Since the end of the 19th century, intensive breeding has produced a large number of widely available hybrids used in horticulture. However, their escape from cultivation and their introduction into the wild pose problems for the conservation of Nymphaea alba in its natural distribution area because many white-flowered hybrids cannot be identified by morphological characters alone. To reliably identify plants of hybrid origin and to study the extent of the invasion of natural habitats by such hybrids, a case study was performed in which plant material was sampled at 34 locations in the federal state of Hesse, Germany, and neighbouring federal states. In addition to morphological information and historical data on the populations, an AFLP analysis was used to distinguish populations of true Nymphaea alba from those of hybrid origin.     

The genetic consequences of selection in natural populations

The selection coefficient, s, quantifies the strength of selection acting on a genetic variant. Despite this parameter's central importance to population genetic models, until recently we have known relatively little about the value of s in natural populations. With the development of molecular genetic techniques in the late 20th century and the sequencing technologies that followed, biologists are now able to identify genetic variants and directly relate them to organismal fitness. We reviewed the literature for published estimates of natural selection acting at the genetic level and found over 3000 estimates of selection coefficients from 79 studies. Selection coefficients were roughly exponentially distributed, suggesting that the impact of selection at the genetic level is generally weak but can occasionally be quite strong. We used both nonparametric statistics and formal random‐effects meta‐analysis to determine how selection varies across biological and methodological categories. Selection was stronger when measured over shorter timescales, with the mean magnitude of s greatest for studies that measured selection within a single generation. Our analyses found conflicting trends when considering how selection varies with the genetic scale (e.g., SNPs or haplotypes) at which it is measured, suggesting a need for further research. Besides these quantitative conclusions, we highlight key issues in the calculation, interpretation, and reporting of selection coefficients and provide recommendations for future research.     

Dynamics of isolated <Emphasis Type="Italic">Saponaria bellidifolia</Emphasis> Sm. populations at northern range periphery

Four populations of Saponaria bellidifolia situated at the species’ northern range periphery (Apuseni Mountains, southeastern Carpathians) were monitored over a period of 5 years. They were chosen to represent different habitat types (rocky, fixed screes, open screes and grassy), disturbance regime (fire), and population sizes (categorized as large and small). The reproductive effort was quantified, and matrix models were used to describe the population dynamics and to assess population viability. Saponaria bellidifolia had very stable population dynamics in the harsh and stable abiotic conditions of the outcrops where populations occur. Habitat conditions exerted a notable influence on the species’ population reproductive performance, growth rate, and vital rates, whereas population size and climate did not have a clear-cut effect on the dynamics of the species. Saponaria bellidifolia maintains viable populations in the southeastern Carpathians, at its northern range periphery.     

A framework for power and sensitivity analyses for quantitative genetic studies of natural populations, and case studies in Soay sheep (Ovis aries)

Studies of the quantitative genetics of natural populations have contributed greatly to evolutionary biology in recent years. However, while pedigree data required are often uncertain (i.e. incomplete and partly erroneous) and limited, means to evaluate the effects of such uncertainties have not been developed. We have therefore developed a general framework for power and sensitivity analyses of such studies. We propose that researchers first generate a set of pedigree data that they wish to use in a quantitative genetic study, as well as data regarding errors that occur in that pedigree. This pedigree is then permuted using the data regarding errors to generate hypothetical 'true' and 'assumed' pedigrees that differ so as to mimic pedigree errors that might occur in the study system under consideration. Phenotypic data are then simulated across the true pedigree (according to user-defined genetic and environmental covariance structures), before being analysed with standard quantitative genetic techniques in conjunction with the 'assumed' pedigree data. To illustrate this approach, we conducted power and sensitivity analyses in a well-known study of Soay sheep (Ovis aries). We found that, although the estimation of simple genetic (co)variance structures is fairly robust to pedigree errors, some potentially serious biases were detected under more complex scenarios involving maternal effects. Power analyses also showed that this study system provides high power to detect heritabilities as low as about 0.09. Given this range of results, we suggest that such power and sensitivity analyses could greatly complement empirical studies, and we provide the computer program PEDANTICS to aid in their application.     

Evolution of the rate of biological aging using a phenotype based computational model

In this work I introduce a simple model to study how natural selection acts upon aging, which focuses on the viability of each individual. It is able to reproduce the Gompertz law of mortality and can make predictions about the relation between the level of mutation rates (beneficial/deleterious/neutral), age at reproductive maturity and the degree of biological aging. With no mutations, a population with low age at reproductive maturity R stabilizes at higher density values, while with mutations it reaches its maximum density, because even for large pre-reproductive periods each individual evolves to survive to maturity. Species with very short pre-reproductive periods can only tolerate a small number of detrimental mutations. The probabilities of detrimental (P_d) or beneficial (P_b) mutations are demonstrated to greatly affect the process. High absolute values produce peaks in the viability of the population over time. Mutations combined with low selection pressure move the system towards weaker phenotypes. For low values in the ratio P_d/P_b, the speed at which aging occurs is almost independent of R, while higher values favor significantly species with high R. The value of R is critical to whether the population survives or dies out. The aging rate is controlled by P_d and P_b and the amount of the viability of each individual is modified, with neutral mutations allowing the system more “room” to evolve. The process of aging in this simple model is revealed to be fairly complex, yielding a rich variety of results.     

Introduction of the non-indigenous amphipod Gammarus pulex alters population dynamics and diet of juvenile trout Salmo trutta

Summary 1. The amphipod Gammarus pulex , introduced to Irish rivers with the aim of enhancing trout feeding, is displacing the native Gammarus duebeni celticus . These two species are generally associated with different environmental conditions and macroinvertebrate communities, confounding assessment of effects of the invader as compared with the native on fish populations. Here, we uncouple effects of the two Gammarus species from environmental gradients.
2. A weir dissects a lowland stretch of the River Lissan, slowing the upstream invasion by G. pulex and resulting in contiguous G. pulex , mixed species and G. d. celticus reaches. Total invertebrate abundance and biomass in the benthos were significantly higher in the G. pulex reach, driven by high invader abundance, with low abundance of other taxa. Gammarus pulex was particularly prominent in night-time drift.
3. Correspondingly, densities and biomass of 0+ trout were significantly higher in the G. pulex reach, while instantaneous loss rates were lower. Fish growth rates were similar among the three reaches.
4. In the G. pulex reach, this invader dominated the diet of 0+ trout, leading to ingestion of significantly higher invertebrate biomass than fish in the other reaches. Fish generally preyed on Gammarus in proportion to its abundance, but exhibited some positive selection for G. pulex in the invaded reach.
5. The negative effects of the invader on native invertebrates are contrasted with positive effects on juvenile trout. This indicates changes in energy flux after invasion, with differential resource use or assimilation by G. pulex probable underlying mechanisms. As the frequency of amphipod invasions increases globally, investigations of their role as strong interactors at multiple levels of ecological organisation is required if the consequences of deliberate and unintentional introductions are to be predicted, and ultimately, prevented.     

Effect of Initial Nematode Population Density on the Interaction of Pratylenchus penetrans and Verticillium dahliae on 'Russet Burbank' Potato

Four similar growth chamber experiments were conducted to test the hypothesis that the initial population density (Pi) of Pratylenchus penetrans influences the severity of interactive effects of P. penetrans and Verticillium dahliae on shoot growth, photosynthesis, and tuber yield of Russet Burbank potato. In each experiment, three population densities of P. penetrans with and without concomitant inoculation with V. dahliae were compared with nematode-free controls. The three specific Pi of JR penetrans tested varied from experiment to experiment but fell in the ranges 0.8-2.5, 1.8-3.9, 2.1-8.8, and 7.5-32.4 nematodes/cm³ soil. Inoculum of V. dahliaewas mixed into soil, and the assayed density was 5.4 propagules/gram dry soil. Plants were grown 60 to 80 days in a controlled environment. Plant growth parameters in two experiments indicated significant interactions between P. penetrans and V. dahliae. In the absence of V. dahliae, P. penetrans did not reduce plant growth and tuber yield below that of the nematode-free control or did so only at the highest one or two population densities tested. In the presence of K dahliae, the lowest population density significantly reduced shoot weight and photosynthesis in three and four experiments, respectively. Higher densities had no additional effect on shoot weight and caused additional reductions in photosynthesis in only one experiment. Population densities of 0.8 and 7.5 nematodes/cm³ soil reduced tuber yield by 51% and 45%, whereas higher densities had no effect or a 15% additional effect, respectively. These data indicate that interactive effects between P. penetrans and V. dahliae on Russet Burbank potato are manifested at P. penetrans population densities less than 1 nematode/cm³ soil and that the nematode population density must be substantially higher before additional effects are apparent.     

锥栗自然居群遗传多样性的ISSR分析

采用20条ISSR分子标记对栗属中国特有种-锥栗(Castanea henryi)的16个自然居群进行了遗传多样性与遗传关系分析。在449份试材上共扩增得到379个位点,其中多态性位点378个,多态性位点百分率(PPL)达99.74%,平均期望杂合度(He)为0.2950,Shannon信息指数(I)为0.4522;居群水平遗传多样性为46.09%,且不同居群遗传多样性水平有较大差异,16个自然居群中以湘西居群的遗传多样性水平最高(PPL=53.30%,He=0.1861,I=0.2781),其次为靖州、庆元、昭通及都江堰居群,南平居群最低(PPL=36.94%,He=0.1202,I=0.1817)。Nei’s遗传多样性和AMOVA分析表明,居群间产生了较大的遗传分化(Gst=0.4466),锥栗自然居群内的遗传变异稍占优势(52.51%)。UPGMA聚类分析将16个锥栗居群分为2大类5亚类。湘西地区可能是锥栗的次生分布中心和现代遗传多样性分布中心,是锥栗研究的资源中心,也是最有价值的基因库,需要重点保护。     

中国17个人群中的耵聍基因频率及干型基因地理分布图

报道了中国17个人群的干型耵聍基因频率,其中汉族人群8个,少数民族人群8个,还有一个未识别民族,即西藏聂拉木县的夏尔巴人。发表了我国汉族人群中以及汉族与少数民族中干型耵聍基因频率的地理分布图。干型耵聍基因在17个人群中的频率及两张基因频率地理分布图都进一步证明,中国汉族与少数民族 (新疆信仰伊斯兰教的少数民族除外)之间有许多基因流动、干型耵聍基因起源于东北亚。中国人群中干型耵聍基因的Fst应在0.1057与0.1602之间。 Abstract:Gene frequencies of serumen type of 17 populations in China are reported,including 8 Han subpopulations,8 ethnic minorities and 1 un-identified ethnic group,the Sherpas in Nyalam County,Tibet.Gene-frequency-distribution maps of dry serumen in Han,as well as in Han and ethnic minorities of China were also published.The gene frequency data of 17 populations and their distribution maps once again showed that there was a large-scale gene exchange between Han and ethnic minorities,my be,with the exception of Moslem ethnic groups in Xinjiang,and that the dry serumen gene originated in Northeast Asia.The Fst of dry serumen gene in Chinese populations as a whole was estimated to be between 0.1057 and 0.1602.