川鄂獐耳细辛一新变型

描述了产于湖北神农架的川鄂獐耳细辛1个新变型―――重瓣川鄂獐耳细辛( Hepatica henryi Steward f. pleniflora X.D.Li et J.Q. Li),与原变型的主要区别为花冠重瓣。     

Studies on Fractionation of Arsenic in Soil in Relation to Crop Uptake

Widespread arsenic (As) contamination in West Bengal and Bangladesh is of great concern as it affects millions of people due to its toxicity. Groundwater, when used for irrigation, helps entry of arsenic into the food chain via a soil-plant-animal continuum. In this study the extent of geo accumulation is measured in order to assess the degree of As contamination in soil. A sequential fractionation study of As revealed the concentration of different arsenic fractions in the order: As held at the internal surfaces of soil aggregates (20.7%) > freely exchangeable As (20.3%) > calcium associated As (18.7%) > chemisorbed As (17%) > residual As (15.7%) > labile As (3.29%). The variation in fractions may be attributed to the mineralogical make-up of soils along with some physicochemical factors. Statistical correlations and path analyses revealed that total and Olsen extractable arsenic (plant available arsenic) are dependent upon the As held at the internal surfaces of soil aggregates and chemisorbed arsenic fraction, which are directly influenced by the mineralogy of these experimental soils. The crop uptake by Kharif rice and mustard grown in these areas also corroborates the above fact. The poor reflection of exchangeable forms of soil arsenic in crop availability revealed that arsenic has undergone transformation via minerals through the continuous use of arsenic-laden water for irrigation.     

Rapid, landscape scale responses in riparian tundra vegetation to exclusion of small and large mammalian herbivores

Productive tundra plant communities composed of a variety of fast growing herbaceous and woody plants are likely to attract mammalian herbivores. Such vegetation is likely to respond to different-sized herbivores more rapidly than currently acknowledged from the tundra. Accentuated by currently changing populations of arctic mammals there is a need to understand impacts of different-sized herbivores on the dynamics of productive tundra plant communities. Here we assess the differential effects of ungulate (reindeer) and small rodent herbivores (voles and lemmings) on high productive tundra vegetation. A spatially extensive exclosure experiment was run for three years on river sediment plains along two river catchments in low-arctic Norway. The river catchments were similar in species pools but differed in species abundance composition of both plants and vertebrate herbivores. Biomass of forbs, deciduous shrubs and silica-poor grasses increased by 40–50% in response to release from herbivory, whereas biomass of silica-rich grasses decreased by 50–75%. Hence both additive and compensatory effects of small rodents and reindeer exclusion caused these significant changes in abundance composition of the plant communities. Changes were also rapid, evident after only one growing season, and are among the fastest and strongest ever documented in Arctic vegetation. The rate of changes indicates a tight link between the dynamics of productive tundra vegetation and both small and large herbivores. Responses were however not spatially consistent, being highly different between the catchments. We conclude that despite similar species pools, variation in plant species abundance and herbivore species dynamics give different prerequisites for change.     

Absence of multiple forms of ribulose 15-bisphosphate carboxylase/oxygenase in mung bean

Ribulose 1,5-bisphosphate carboxylase/oxygenase has been reported to occur in multiple forms in mung bean (Phaseolus aureus) using Sephadex G-200 chromatography. We have isolated this enzyme by identical methodology. The profile from Sephadex G-200 chromatography shows only one peak in contrast to the previous report and we find no evidence to corroborate the conclusions. Where V_c, V_o and K_c, K_o represent V_max and Michaelis constants, respectively, the constant V_cK_o/V_oK_c for the single form is 70 at 40 μM CO₂ and 1200 μM O₂.     

Dynamics in the unfolded state of beta2-microglobulin studied by NMR

Many proteins form amyloid-like fibrils in vitro under conditions that favour the population of partially folded conformations or denatured state ensembles. Characterising the structural and dynamic properties of these states is crucial towards understanding the mechanisms of self-assembly in amyloidosis. The aggregation of beta2-microglobulin (beta2m) into amyloid fibrils in vivo occurs in the condition known as dialysis-related amyloidosis (DRA) and the protein has been shown to form amyloid-like fibrils under acidic conditions in vitro. We have used a number of 1H-15N nuclear magnetic resonance (NMR) experiments in conjunction with site-directed mutagenesis to study the acid-unfolded state of beta2m. 15N NMR transverse relaxation experiments reveal that the acid-denatured ensemble, although predominantly unfolded at the N and C termini, contains substantial non-native structure in the central region of the polypeptide chain, stabilised by long-range interactions between aromatic residues and by the single disulphide bond. Relaxation dispersion studies indicate that the acid-unfolded ensemble involves two or more distinct species in conformational equilibrium on the micro- to millisecond time-scale. One of these species appears to be hydrophobically collapsed, as mutations in an aromatic-rich region of the protein, including residues that are solvent-exposed in the native protein, disrupt this structure and cause a consequent decrease in the population of this conformer. Thus, acid-unfolded beta2m consists of a heterogeneous ensemble of rapidly fluctuating species, some of which contain stable, non-native hydrophobic clusters. Given that amyloid assembly of beta2m proceeds with lag kinetics under the conditions of this study, a rarely populated species such as a conformer with non-native aromatic clustering could be key to the initiation of amyloidosis.     

Acid glycosidases from hen oviduct and egg albumen

Activities of seven acid glycosidases: β-N-acetylhexosaminidase (β-HEX), α- and β-galactosidase (α- and β-GAL), α- and β-mannosidase (α- and β-MAN), α-glucosidase and α-fucosidase in magnum region of hen (Gallus gallus domesticus) oviduct, and four acid glycosidases: β-HEX, β-GAL, α- and β-MAN in egg albumen, were investigated. β-HEX from magnum and egg albumen hydrolysed 4-methylumbelliferyl-β-N-acetylhexosamine-6-sulphate (4-MeUmbGlcNAc-6-SO₄) like mammalian β-HEX form A. Multiple forms of magnum and egg albumen β-HEX, β-GAL, α- and β-MAN were separated by strong anion exchange chromatography and chromatofocusing method. Chromatofocusing of the magnum resulted in the appearance of multiple forms for β-HEX with pI of 6.18, 5.43, 5.55, 5.34, 5.27 and 5.16, for β-GAL with pI of 4.98, 4.84, 4.77, 4.64 and 4.68–4.63, for α-MAN with pI of ≥ 7.4, 6.75, 6.62 and 6.26, and for β-MAN two forms with pI of 6.37 and 5.77. Chromatofocusing of egg albumen yields multiple forms for β-HEX with pI of 6.24, 6.08, 5.55 and 5.35, for β-GAL two forms with pI of 5.10 and 4.86–4.80 for α-MAN multiple forms with pI of ≥ 7.4, 6.80, 6.60 and 6.30, and for β-MAN forms with pI of 6.30 and 5.77. In conclusion, this study was the first to show β-HEX activity against 4-MeUmbGlcNAc-6-SO₄ in the magnum and albumen of bird eggs, corresponding to β-HEX A activity in mammals. Main multiple forms of β-HEX, β-GAL, α- and β-MAN occurring in the magnum were revealed in the egg albumen. Comparison with a cock of the same breed showed that hen egg magnum and albumen has the same multiple forms of the enzymes that are found in the epididymides and seminal plasma of the cock.     

Showing your ID: intrinsic disorder as an ID for recognition, regulation and cell signaling

Regulation, recognition and cell signaling involve the coordinated actions of many players. To achieve this coordination, each participant must have a valid identification (ID) that is easily recognized by the others. For proteins, these IDs are often within intrinsically disordered (also ID) regions. The functions of a set of well-characterized ID regions from a diversity of proteins are presented herein to support this view. These examples include both more recently described signaling proteins, such as p53, alpha-synuclein, HMGA, the Rieske protein, estrogen receptor alpha, chaperones, GCN4, Arf, Hdm2, FlgM, measles virus nucleoprotein, RNase E, glycogen synthase kinase 3beta, p21(Waf1/Cip1/Sdi1), caldesmon, calmodulin, BRCA1 and several other intriguing proteins, as well as historical prototypes for signaling, regulation, control and molecular recognition, such as the lac repressor, the voltage gated potassium channel, RNA polymerase and the S15 peptide associating with the RNA polymerase S-protein. The frequent occurrence and the common use of ID regions in important protein functions raise the possibility that the relationship between amino acid sequence, disordered ensemble and function might be the dominant paradigm for the molecular recognition that serves as the basis for signaling and regulation by protein molecules.     

Contributions of hydrophobic domain interface interactions to the folding and stability of human gammaD-crystallin

Human gammaD-crystallin (HgammaD-Crys) is a monomeric eye lens protein composed of two highly homologous beta-sheet domains. The domains interact through interdomain side chain contacts forming two structurally distinct regions, a central hydrophobic cluster and peripheral residues. The hydrophobic cluster contains Met43, Phe56, and Ile81 from the N-terminal domain (N-td) and Val132, Leu145, and Val170 from the C-terminal domain (C-td). Equilibrium unfolding/refolding of wild-type HgammaD-Crys in guanidine hydrochloride (GuHCl) was best fit to a three-state model with transition midpoints of 2.2 and 2.8 M GuHCl. The two transitions likely corresponded to sequential unfolding/refolding of the N-td and the C-td. Previous kinetic experiments revealed that the C-td refolds more rapidly than the N-td. We constructed alanine substitutions of the hydrophobic interface residues to analyze their roles in folding and stability. After purification from E. coli, all mutant proteins adopted a native-like structure similar to wild type. The mutants F56A, I81A, V132A, and L145A had a destabilized N-td, causing greater population of the single folded domain intermediate. Compared to wild type, these mutants also had reduced rates for productive refolding of the N-td but not the C-td. These data suggest a refolding pathway where the domain interface residues of the refolded C-td act as a nucleating center for refolding of the N-td. Specificity of domain interface interactions is likely important for preventing incorrect associations in the high protein concentrations of the lens nucleus.     

A New Multivariate Approach to Studying Temporal Changes of Vegetation

We emphasize the necessity of a complex approach to evaluating vegetation change at various levels of abstraction. The analytical steps include comparisons at the data, derived variable, distance, ordination and classification levels. A variety of data randomization methods incorporated in testing the significance of changes in raw data are introduced and compared. It is shown that these are true alternatives to Procrustean comparisons, which offer an apparently unfortunate choice in the presence/absence case. We propose to evaluate nearest neighbor relationships among quadrats in a new method, called adjacency analysis, to detect temporal trends that may remain unrevealed, should our attention be paid to full distance structures only. As an illustration, compositional and structural changes in the rock grassland vegetation of the Sas-hegy Nature Reserve (Budapest, Hungary), intensively sampled by quadrats in 1977 and 2000, are evaluated. Permutation tests show that differences between the 2 years are much smaller than expected by chance alone. Such an overall stability in community structure, however, does not mean that minor aspects of vegetation pattern are invariant over the years. Changes in life form and seed mass spectra are explained by the fluctuation of hemicryptophytes and the slight but detectable expansion of annuals and woody species. Classification is slightly rearranged in time, with clearly detectable within-cluster changes, also depicted in ordination scattergrams.