退化湿地生态系统恢复的一些理论问题

湿地是陆地和水生生态系统间的过渡带,作为一种重要的自然资源,湿地是野生生物的栖息地,可调控区域内的水分循环和C、N等元素的生物地球化学循环;其生物生产力可为人类提供食物和商品,还能过滤和分解所吸纳的污染物,由于湿地的功能未受到足够的重视。全世界的湿地因大量围垦和干扰而丧失或退化,在退化湿地的恢复过程中,可用自我设计和设计理论、演替理论、入侵理论、河流理论、洪水脉冲理论、边缘效应理论和中度干扰假说等理论作指导,湿地恢复的方法包括：尽可能采用工程与生物措施相结合的方法,恢复湿地的供水连接,利用水文过程加快恢复,控制污染物的流入,修饰湿地的地形或景观,改良湿地土壤,在最佳位置重建湿地的生物群落,减少人类干扰,提高湿地的自我维持能力,建立缓冲带以保护自然的和恢复的湿地,建立湿地稳定性和持续性的评价体系并予以监控。     

Dynamic properties of Lednev's parametric resonance mechanism

This paper presents a further development of the mechanism for the detection of weak magnetic fields proposed by [Lednev (1991): Bioelectromagnetics 12:71–75]. The fraction of excited oscillator states of an unhydrated ion is studied in a dynamic model driven by the predicted (time-varying) transition probability in the presence of thermal noise and an unspecified excitation mechanism. The main results of Lednev are confirmed. In addition, I conclude that ultraharmonic and ultrasubharmonic resonances may also be observed, provided that the response time of the dynamic system is similar to the period of the oscillating magnetic field. I discuss the time scales involved in the mechanism and present theoretical constraints on these parameters. The crucial requirement for the theory's applicability is that the lifetime of the excited states of the affected ion oscillator exceeds the period of the applied magnetic field. Numerical solutions of the dynamic system are given and are shown to correspond well to theoretical expectations. The main discrepancy between the theories of Lednev and of Blanchard and Blackman [Blanchard and Blackman (1994): Bioelectromagnetics 15:217–238] appears to be due to an inconsistency in the latter paper. The general problem of robust analysis of experimental data is discussed, and I suggest a test of compliance with the Lednev model that is independent of all parameters except for the ratio of oscillating and static field strength (B₁/B₀) for many resonance conditions and experimental models. © 1996 Wiley-Liss, Inc.     

基于多重计算设计策略提高奇异变形杆菌脂肪酶的热稳定性

来自奇异变形杆菌的脂肪酶(Proteus mirabilis lipase,PML)具有较好的有机溶剂耐受性,在生产生物柴油等领域有广泛的应用潜力.然而,其热稳定性仍有待提高以更好地适应工业生产.近年来,基于计算机辅助的多种计算设计策略的发展为酶的热稳定性改造提供了更多的思路.文中首先选择了 3种基于互补算法的软件AB...     

Redesigning therapies for pantothenate kinase–associated neurodegeneration

Pantothenate kinase–associated neurodegeneration (PKAN) is an incurable rare genetic disorder of children and young adults caused by mutations in the PANK2 gene, which encodes an enzyme critical for the biosynthesis of coenzyme A. Although PKAN affects only a small number of patients, it shares several hallmarks of more common neurodegenerative diseases of older adults such as Alzheimer''s disease and Parkinson''s disease. Advances in etiological understanding and treatment of PKAN could therefore have implications for our understanding of more common diseases and may shed new lights on the physiological importance of coenzyme A, a cofactor critical for the operation of various cellular metabolic processes. The large body of knowledge that accumulated over the years around PKAN pathology, including but not limited to studies of various PKAN models and therapies, has contributed not only to progress in our understanding of the disease but also, importantly, to the crystallization of key questions that guide future investigations of the disease. In this review, we will summarize this knowledge and demonstrate how it forms the backdrop to new avenues of research.     

我国工业生物技术和产业的现状、差距与任务

工业生物技术是利用生化反应和生物体机能进行物质合成加工与能量转化利用的集成技术,正在支撑建立以可发酵糖、秸秆、二氧化碳等可再生资源为原料的化学品绿色高效制造新路线,有望实现工业制造方式的根本转变,是支撑经济社会可持续发展的重大战略技术,已成为世界各国科技和产业竞争的焦点。本文从工业生物技术深度融入和支撑生物经济发展的态势出发,系统分析了我国工业生物技术和生物产业发展的现状、短板问题,提出了未来建议重点发展的主要方向。     

工业蛋白质理性设计与应用

作为合成生物学与绿色生物制造等领域的底层核心技术,蛋白理性设计可有效解决天然功能元件性能不足等共性挑战,创制高性能人工酶元件。值此天津工业生物研究所(Tianjin Institute of Industrial Biotechnology, TIB)创立10周年之际,文中回顾了研究所在工业蛋白理性设计领域的系列重要工作进展。从酶设计方法学研究、新酶反应设计到生物催化应用等方面进行了分析讨论,并展望了本领域未来发展方向。望借此搭建学术界和产业界与酶理性设计的桥梁,促进新技术、新策略的开发应用,加速融合人工酶的基础研究与产业应用,推动我国生物制造领域的科技创新升级。     

数字细胞模型的研究及应用

组学分析技术的发展推动生物学逐渐成为一门以数据分析为中心的科学。依托生物数据在细胞整体系统水平建立数字细胞模型,对于理解细胞系统组织原理和生命产生进化规律,预测各种环境和基因扰动对细胞功能的影响并指导设计人工生命具有重要意义,因此数字细胞的构建模拟设计已成为合成生物学的核心研究内容与底层支撑技术。本文重点对天津工业生物技术研究所创立十年来在数字细胞研究方面的进展进行回顾介绍,重点包括基因组尺度代谢网络模型的构建、质控以及其在途径设计和指导菌种代谢工程改造方面的应用,进一步结合近年来细胞模型研究的前沿趋势,对整合多种约束的模型的构建和分析研究方面的最新成果进行了介绍,最后对数字细胞研究的未来发展方向进行展望。数字细胞技术将与基因组测序、合成和编辑等合成生物学前沿技术一起提升人们对生命进行读写改创的能力。     

Towards novel biocatalysts via protein design: the case of lipases

Abstract: During the past 3 years, the tertiary structures of several lipases have been solved by X-ray analysis. The structures revealed unique features such as hydrophobic 'patches' on the surface, presumably involved in lipid supersubstrate binding, and a lid structure which covers the active site in the absence of substrate. Only very recently the first X-ray structure of a bacterial lipase has been solved, and further structural features different from lipases of eukaryotic origin became apparent. Many lipase genes have been cloned and sequenced recently, and expression systems for the preparation of recombinant enzymes in good yields are available. As an example, the lipase from Rhizopus oryzae has been successfully expressed by us in Escherichia coli , and the resulting inclusion bodies were renatured in high yields. Consequently, the mechanism of action of lipases is now being studied via site-directed mutagenesis, and the rational design of lipases for the selective transformation of substrates is presently addressed in several laboratories.     

Densitometric Quantification and Optimization of Polyphenols in Phyllanthus maderaspatensis by HPTLC

Quantifying and optimizing the polyphenol content of Phyllanthus maderaspatensis was accomplished using a single-solvent HPTLC system. Analyzing hydroalcoholic extracts for kaempferol, rutin, ellagic acid, quercetin, catechin, and gallic acid, we simultaneously quantified and optimized their concentration. In the experiment, the methanol to water ratio (%), temperature (°C), and time of extraction (min) were all optimized using a Box-Behnken statistical design. Kaempferol, rutin, ellagic acid, quercetin, catechin, and gallic acid were among the dependent variables analyzed. In the HPTLC separation, silica gel 60F254 plates were used, and toluene, ethyl acetate, and formic acid (5:4:1) made up the mobile phase. For kaempferol, rutin, ellagic acid, quercetin, catechin, and gallic acid, densitometric measurements were carried out using the absorbance mode at 254 nm. Hydroalcoholic extract of P. maderaspatensis contains rutin (0.344), catechin (2.62), gallic acid (0.93), ellagic acid (0.172), quercetin (0.0108) and kaempferol (0.06). Further, it may be affected by more than one factor at a time, resulting in a varying degree of reaction. A negative correlation was found between X1 (extraction time (min)) and X2 (temperature), as well as X1 and X3 (solvent ratios). Taking these characteristics into consideration, the method outlined here is a validated HPTLC method for measuring kaempferol, rutin, ellagic acid, quercetin, catechin, and gallic acid.     

大孢虫花菌丝体多糖提取工艺优化及其测定方法优选

通过采用3,5-二硝基水杨酸法、蒽酮-硫酸法和苯酚-硫酸法测定大孢虫花PaecilomycestenuipesPeck菌丝体多糖含量,比较精密度、样品回收率、稳定性三个指标,得出最佳测定方法为蒽酮-硫酸法。根据一次一因素实验和Box-Behnken中心组合实验,应用SAS软件分析得出大孢虫花菌丝体多糖提取的最佳条件为:100℃沸水浴,提取2h,重复4次,料液比(菌丝体质量:蒸馏水体积)为1︰20,此条件下大孢虫花菌丝体多糖为4.12g/100g。