家畜基因组选择研究进展

近年来,随着基因芯片技术的发展与育种技术的进步,动植物的基因组选择成为研究热点。在家畜育种中,基因组选择凭借其准确性高、世代间隔短和育种成本低等优势被应用于各种经济动物的种畜选择中。本文详细介绍了基因分型技术和基因组育种值估计方法(最小二乘法、RR-BLUP法、GBLUP法、ssGBLUP法、贝叶斯A法、贝叶斯B法等),并对这些育种方法选用的标记范围、准确性以及计算速度进行了比较,总结了我国和其他国家基因组选择在种畜选择中的应用情况及存在的问题,展望了目前国内外在基因组选择上的最新研究动态及进展,以期为其他育种工作者进一步了解基因组选择提供参考。     

MR扩散加权成像和CT及MR灌注成像对不同程度肝硬化患者的诊断价值

目的:研究MR扩散加权成像(DWI)和CT及MR灌注成像对不同程度肝硬化患者的诊断价值。方法:选择从2015年8月到2017年2月在我院治疗的肝硬化患者60例作为研究对象,根据Child-Pugh分级进行分组,其中A级32例为轻度肝硬化(记为A组),B级16例、C级12例为中重度肝硬化(记为B组),另选同期在我院进行体检的健康志愿者30例记为C组,对三组受试者分别进行DWI检查、CT及MR灌注成像,对比各组ADC值、肝脏动门脉灌注比率[SSr(ct)及SSr(mr)],采用Spearman相关性分析各指标之间的相关性。结果:三组ADC值整体比较无统计学差异(P0.05),A、B两组的ADC值较C组降低,但差异无统计学意义(P0.05)。A、B两组的ADC值比较无统计学差异(P0.05)。三组SSr(ct)、SSr(mr)整体比较,差异有统计学意义(P0.05),B组的SSr(ct)及SSr(mr)较A、C两组明显升高,差异均有统计学意义(均P0.05)。A、C两组的SSr(ct)及SSr(mr)比较无统计学差异(P0.05)。Spearman相关性分析显示,不同程度肝硬化患者的SSr(ct)与SSr(mr)呈正相关(r=0.687,P=0.000)。结论:CT以及MR灌注成像均可较好地反映出肝硬化的病变程度,且二者较DWI成像的诊断效果更佳,值得临床推广。     

A novel pH‐controlled hydrogen sulfide donor protects gastric mucosa from aspirin‐induced injury

Hydrogen sulphide (H₂S) serves as a vital gastric mucosal defence under acid condition. Non‐steroidal anti‐inflammatory drugs (NSAIDs) are among widely prescribed medications with effects of antipyresis, analgesia and anti‐inflammation. However, their inappropriate use causes gastric lesions and endogenous H₂S deficiency. In this work, we reported the roles of a novel pH‐controlled H₂S donor (JK‐1) in NSAID‐related gastric lesions. We found that JK‐1 could release H₂S under mild acidic pH and increase solution pH value. Intragastrical administration of aspirin (ASP), one of NSAIDs, to mice elicited significant gastric lesions, evidenced by mucosal festering and bleeding. It also led to infiltration of inflammatory cells and resultant releases of IL‐6 and TNF‐α, as well as oxidative injury including myeloperoxidase (MPO) induction and GSH depletion. In addition, the ASP administration statistically inhibited H₂S generation in gastric mucosa, while up‐regulated cyclooxygenase (COX)‐2 and cystathionine gamma lyase (CSE) expression. Importantly, these adverse effects of ASP were prevented by the intragastrical pre‐administration of JK‐1. However, JK‐1 alone did not markedly alter the property of mouse stomachs. Furthermore, in vitro cellular experiments showed the exposure of gastric mucosal epithelial (GES‐1) cells to HClO, imitating MPO‐driven oxidative injury, decreased cell viability, increased apoptotic rate and damaged mitochondrial membrane potential, which were reversed by pre‐treatment with JK‐1. In conclusion, JK‐1 was proved to be an acid‐sensitive H₂S donor and could attenuate ASP‐related gastric lesions through reconstruction of endogenous gastric defence. This work indicates the possible treatment of adverse effects of NSAIDs with pH‐controlled H₂S donors in the future.     

长尖对齿藓原丝体快速培育的关键影响因子研究

为了给苔藓结皮野外恢复的大规模接种提供丰富种源,本文利用0.1% NaClO（10、15、20、30、45、60、120 s）和0.1% HgCl₂（10、15、20、30、45、60、120 s）两种消毒液,采用Knop、MS和Hoagland 3种培养基,设置5.5、6、6.5、7、7.5、8、8.5七个水平的pH值,通过单因素试验设计方法,测定长尖对齿藓[Didymodon ditrichoides（Broth.）]茎叶体的成活率、原丝体长度和分枝数等指标,探讨影响长尖对齿藓原丝体扩繁的关键因子。结果表明：（1）消毒方式、培养基及pH均对长尖对齿藓茎叶体的成活率、原丝体长度和分枝数有显著影响（P<0.05）,影响大小依次均为消毒方式 > 培养基 > pH;（2）最适合的消毒方式为：0.1% NaClO消毒15~20 s;（3）最适合长尖对齿藓原丝体生长的培养基是Knop和Hoagland培养基;（4）最适合长尖对齿藓原丝体生长的pH是7.5。从而得出快速培育长尖对齿藓原丝体的最佳组合为：0.1% NaClO消毒15~20 s+Hoagland/Knop+pH=7.5。本文的研究结果可以缩短长尖对齿藓生长周期以进行快速繁殖,为苔藓结皮的快速培育以及工程化应用提供一定的借鉴。     

Real‐time pH monitoring of industrially relevant enzymatic reactions in a microfluidic side‐entry reactor (μSER) shows potential for pH control

Monitoring and control of pH is essential for the control of reaction conditions and reaction progress for any biocatalytic or biotechnological process. Microfluidic enzymatic reactors are increasingly proposed for process development, however typically lack instrumentation, such as pH monitoring. We present a microfluidic side‐entry reactor (μSER) and demonstrate for the first time real‐time pH monitoring of the progression of an enzymatic reaction in a microfluidic reactor as a first step towards achieving pH control. Two different types of optical pH sensors were integrated at several positions in the reactor channel which enabled pH monitoring between pH 3.5 and pH 8.5, thus a broader range than typically reported. The sensors withstood the thermal bonding temperatures typical of microfluidic device fabrication. Additionally, fluidic inputs along the reaction channel were implemented to adjust the pH of the reaction. Time‐course profiles of pH were recorded for a transketolase and a penicillin G acylase catalyzed reaction. Without pH adjustment, the former showed a pH increase of 1 pH unit and the latter a pH decrease of about 2.5 pH units. With pH adjustment, the pH drop of the penicillin G acylase catalyzed reaction was significantly attenuated, the reaction condition kept at a pH suitable for the operation of the enzyme, and the product yield increased. This contribution represents a further step towards fully instrumented and controlled microfluidic reactors for biocatalytic process development.     

Truffle biogeography—A case study revealing ecological niche separation of different Tuber species

Ecology of hypogeic mycorrhizal fungi, such as truffles, remains largely unknown, both in terms of their geographical distribution and their environmental niches. Occurrence of true truffles (Tuber spp.) was therefore screened using specific polymerase chain reaction (PCR) assays and subsequent PCR amplicon sequencing in tree roots collected at 322 field sites across the Czech Republic. These sites spanned a wide range of climatic and soil conditions. The sampling was a priori restricted to areas thought to be suitable for Tuber spp. inasmuch as they were characterized by weakly acidic to alkaline soils, warmer climate, and with tree species previously known to host true truffles. Eight operational taxonomic units (OTUs) corresponding to Tuber aestivum, T. borchii, T. foetidum, T. rufum, T. indicum, T. huidongense, T. dryophilum, and T. oligospermum were detected. Among these, T. borchii was the OTU encountered most frequently. It was detected at nearly 19% of the sites. Soil pH was the most important predictor of Tuber spp. distribution. Tuber borchii preferred weakly acidic soils, T. foetidum and T. rufum were most abundant in neutral soils, and T. huidongense was restricted to alkaline soils. Distribution of T. aestivum was mainly dictated by climate, with its range restricted to the warmest sites. Host preferences of the individual Tuber spp. were weak compared to soil and climatic predictors, with the notable exception that T. foetidum appeared to avoid oak trees. Our results open the way to better understanding truffle ecology and, through this new knowledge, also to better‐informed trufficulture.     

围封对温带半干旱典型草原群落种间关联的影响

为明确围栏封育对温带典型草原群落物种种间关系的影响, 运用方差比率法、基于2 × 2列联表的χ²检验、Ochiai指数、Spearman相关分析, 对位于内蒙古锡林郭勒盟太仆寺旗封育6年的围封样地及围栏外样地的主要优势种及伴生种进行了种间关联和相关性分析。同时运用生态位宽度指数分析围栏内外物种对环境资源的利用能力及种间竞争情况。结果表明: 1) 基于2 × 2列联表的χ²检验结果表明围栏内9个种对显著正联结, 4个种对显著负联结(p ≤ 0.05), 围栏外有19个种对显著正联结, 8个种对显著负联结; Spearman秩相关分析表明围栏内有10个种对显著正相关, 16个种对显著负相关, 围栏外有12个种对显著正相关, 30个种对显著负相关。χ²检验和Spearman检验结果表明围栏内群落处于稳定发展状态, 而围栏外群落处于退化阶段。2)围栏内外的优势种Ochiai指数都较高, 但χ²检验并不显著, 表明优势种之间的关联程度高, 但存在相对独立的分布格局。3)围栏内主要优势种的生态位宽度大于围栏外, 说明围栏封育保护了主要优势种的生长。     

台湾海峡离岛工业区海域浮游生物丰度之长期变化

本研究利用1993-2010年在云林县台西乡沿岸的8个站位所进行的一年四季近岸10 m及离岸20 m水深的浮游生物调查资料及同步的水质资料, 分析了发电厂建成后对浮游生物的影响。本海域18年内浮游生物各类群丰度/密度的各季节平均值, 皆以第四季(10-12月)为最低, 而各个类群的最高平均值出现的季别并不一致。其中浮游动物出现于第一和第二季(1-6月), 浮游植物和虾、蟹幼体在第二季(4-6月), 而鱼卵和仔鱼则是在第一至第三季(1-9月)。自2000年第三季起, 测线5的测站经常有pH值低于7.8的情形。当该海域水体测得pH值低于7.8时, 浮游动物(75±69 ind./m³)﹑浮游植物((1.60±2.28)×10³ cell/L)﹑虾幼体(2.4±5.8 ind./m³)﹑蟹幼体(1.9±5.0 ind./m³)及鱼卵(0.88±1.10 ind./m³)和仔鱼(0.16±0.32 ind./m³)的丰度/密度值皆偏低, 仅为历年总平均值的1/2。据此建议将发电厂排入海洋之水体pH值控制在7.8以上, 以降低对浮游生物多样性及丰度的冲击。     

云南萨尔温江水系3条一级支流鱼类区系存在度及其在鱼类保护区设置中的意义

将经典动物区系与区系存在度分析方法相结合, 探讨云南萨尔温江水系的南滚河、南汀河及勐波罗河3条一级支流的鱼类多样性相对于萨尔温江中游水系鱼类的代表性, 比较其鱼类区系存在度差异, 分析区系组成特征及科、属在区系建成中的重要性, 旨在探讨区系存在度指标对鱼类保护区设置的指导作用。结果显示, 萨尔温江中游水系(云南段)共记录土著鱼类74种, 分隶于5目12科45属。3条支流共有土著鱼类53种, 分隶于5目12科38属, 其中南滚河鱼类有9科23属32种, 南汀河有11科33属47种, 勐波罗河有10科26属33种。按种类的绝对数排序, 3条支流均是鲤科、鮡科和条鳅科排前3位。而按区系存在度结果排序, 均是鳗鲡科、鳢科、刺鳅科、合鳃鱼科和鮡科等5个科位列前5位。两种方法排序结果显示, 3条支流表现出完全的一致性。同一属级分类阶元的区系存在度在不同支流间变异较大, 属级和种级分类阶元的地域性分布特点渐趋明显。这3条一级支流鱼类均是以老第三纪原始类群为主体, 南方类群次之, 还有少量青藏高原类群。结合鱼类区系存在度研究结果, 在设置淡水鱼类保护区时, 应考虑在大水系的上中下游分别选择1条或多条一级支流建立保护区; 如果目、科级存在度高的阶元在鱼类保护区规划时涵盖得多, 则保护了较多的高级阶元, 但并非是必须考虑的阶元; 而属级存在度值则是保护区规划时需要特别关注的事项。