Flux balance analysis in the production of clavulanic acid by Streptomyces clavuligerus

In this work, in silico flux balance analysis is used for predicting the metabolic behavior of Streptomyces clavuligerus during clavulanic acid production. To choose the best objective function for use in the analysis, three different optimization problems are evaluated inside the flux balance analysis formulation: (i) maximization of the specific growth rate, (ii) maximization of the ATP yield, and (iii) maximization of clavulanic acid production. Maximization of ATP yield showed the best predictions for the cellular behavior. Therefore, flux balance analysis using ATP as objective function was used for analyzing different scenarios of nutrient limitations toward establishing the effect of limiting the carbon, nitrogen, phosphorous, and oxygen sources on the growth and clavulanic acid production rates. Obtained results showed that ammonia and phosphate limitations are the ones most strongly affecting clavulanic acid biosynthesis. Furthermore, it was possible to identify the ornithine flux from the urea cycle and the α‐ketoglutarate flux from the TCA cycle as the most determinant internal fluxes for promoting clavulanic acid production. © 2015 American Institute of Chemical Engineers Biotechnol. Prog., 31:1226–1236, 2015     

中国EV71病毒VP1蛋白生物信息学分析

以肠道病毒71型(Enterovirus71,EV71)VP1蛋白基因序列为基础,利用生物软件对EV71病毒中国分离株VP1蛋白进行进化树、N-糖基化位点、二级结构及抗原位点的预测和分析。结果显示国内分离株多为C4亚型,有3株湖南分离株为A型,提示疫苗的研发应着重于预防C4b亚型EV71疫苗的研发。     

科尔沁沙地盐蒿种群的空间分布格局及关联性

以科尔沁沙地半固定沙丘和流动沙丘两种不同沙丘上的盐蒿(Artemisia halodendron)种群为研究对象,采用空间点格局方法研究了 0～20 m尺度上盐蒿种群的空间分布格局及其关联性.结果表明,半固定沙丘上盐蒿种群的数量远大于流动沙丘,不同生长发育阶段的种群结构呈偏正态分布,属于稳定型种群;流动沙丘上不同生长发...     

水稻二化螟内共生菌杀雄菌属和沃尔巴克氏体的检测与分析

应用杀雄菌属(Arsenophonus)23S rDNA基因和沃尔巴克氏体(Wolbachia) wsp基因的特异引物,通过PCR扩增的方法对我国20个水稻二化螟地理种群感染两类内共生菌的情况进行了检测.结果表明: 我国水稻二化螟不同地理种群的Arsenophonus和Wolbachia感染率不一致,哈尔滨、惠水、吉林、南阳和扬州5个地理种群的Arsenophonus感染率为5.0%～50.0%;汉中、南宁和扬州3个地理种群的Wolbachia感染率为25.0%～40.0%,其他地理种群中没有检测到这两种共生菌的存在.水稻二化螟不同地理种群感染的Arsenophonus 23S rDNA基因序列完全一致,将该基因株型命名为csArs.但所检测到的Wolbachia wsp基因序列不一致,分别为wChisup1、wChisup5和wChisup6,其中wChisup1属于A群,其他属于B群.这说明水稻二化螟感染的Arsenophonus为同一株型,而感染的Wolbachia株型较为复杂.通过构建系统发育树发现,水稻二化螟体内的Arsenophonus23S rDNA基因和Wolbachia wsp基因与其他物种体内相关序列完全一致或高度相似.     

海南五指山热带山地雨林植物物种多样性研究

王指山热带山地雨林的物种种类十分丰富,在１ｈｍ＾２样地中共出现５４个科,１００个属的乔木树种１７７种,１３３７个个体。区系地理分析表明属的分布区类型以热带分布型成分占优,为８９．０％,充分体现了五指山山地雨林的热带性质。多样性指数分析结果为：样地１Ｍａｒｇａｌｅｆ指数１７．８２２,Ｓｈａｎｎｏｎ－Ｗｉｅｎｅｒ指数５．６２１,均匀度０．８２３,Ｓｉｍｐｓｏｎ指数０．０５０,均匀度６．７７５,表明五指     

Modeling activity patterns of wildlife using time‐series analysis

The study of wildlife activity patterns is an effective approach to understanding fundamental ecological and evolutionary processes. However, traditional statistical approaches used to conduct quantitative analysis have thus far had limited success in revealing underlying mechanisms driving activity patterns. Here, we combine wavelet analysis, a type of frequency‐based time‐series analysis, with high‐resolution activity data from accelerometers embedded in GPS collars to explore the effects of internal states (e.g., pregnancy) and external factors (e.g., seasonal dynamics of resources and weather) on activity patterns of the endangered giant panda (Ailuropoda melanoleuca). Giant pandas exhibited higher frequency cycles during the winter when resources (e.g., water and forage) were relatively poor, as well as during spring, which includes the giant panda's mating season. During the summer and autumn when resources were abundant, pandas exhibited a regular activity pattern with activity peaks every 24 hr. A pregnant individual showed distinct differences in her activity pattern from other giant pandas for several months following parturition. These results indicate that animals adjust activity cycles to adapt to seasonal variation of the resources and unique physiological periods. Wavelet coherency analysis also verified the synchronization of giant panda activity level with air temperature and solar radiation at the 24‐hr band. Our study also shows that wavelet analysis is an effective tool for analyzing high‐resolution activity pattern data and its relationship to internal and external states, an approach that has the potential to inform wildlife conservation and management across species.     

大棚黄瓜霜霉病气候生态防治方法研究再报——高温控制与病情和产量关系及其防治指标

本文采用田间温度控制试验资料,用数理统计的方法分析高温控制范围、控制时间和控制频率与大棚黄瓜霜霉病的发生期、流行期、发生程度以及产量的关系,并建立了统计相关模式,确定了高温控制生态防治方法的技术指标。最高温度、高温控制时间和控制频率这3个主要指标与病情和黄瓜产量的关系非常密切,最高气温每升高1℃,发病期和流行期将推迟3—5天,病叶率降低13—15％,黄瓜产量可增长10％左右。在一定范围内,控制时间越长,频率越高,则发病期和流行期越晚,病情越轻,产量越高。研究证明,高温控制方法是一个有效的生态防治方法,具有明确的气候生态学依据。     

广西北仑河口红树植物种群结构与动态特征

以广西北仑河口国家级自然保护区4种红树植物秋茄(Kandelia obovata)、桐花树(Aegiceras corniculatum)、白骨壤(Avicennia marina)和木榄(Bruguiera gymnorrhiza)为研究对象,在野外样地调查的基础上,采用高度级和大小级结构、静态生命表、存活曲线、时间序列分析和7种聚集强度指数等方法对4种红树植物的种群结构和动态进行了分析和预测,旨在阐明红树植物种群与群落的结构特征和动态变化规律以及潜在的驱动机制,为广西红树林生态系统的保护与恢复提供基础资料和科学依据。研究结果表明:木榄和秋茄种群更新良好,桐花树更新受到一定阻力,种群相对稳定,白骨壤种群更新不良,呈现明显的衰退趋势;4种红树植物种群不同龄级的存活量差别较大,存活量和生命期望一般随龄级的增加逐渐减少;白骨壤种群的存活曲线属于DeeveyⅠ型,其种群个体均能达到其平均生理寿命,木榄和秋茄种群属DeeveyⅡ型,各龄级个体具有相对一致的死亡率,而桐花树种群介于DeeveyⅠ型和DeeveyⅡ型之间,其幼龄期死亡率偏高,中龄期后死亡率逐渐接近;时间序列分析同样表明,白骨壤未来种群数量将明显降低,种群逐步衰退,桐花树未来种群数量将表现为稳中有降,而木榄和秋茄未来种群数量将趋于增加。4种红树植物不同龄级种群多呈现聚集分布,聚集强度往往随种群龄级的增加而趋于降低。上述结果表明,北仑河口4种红树植物的种群动态与群落所处演替阶段息息相关,先锋植物白骨壤种群处于较快衰退阶段,演替前中期的桐花树种群稳中有降,而演替中后期的秋茄和木榄种群出现不同程度的增长,反映出本次调查的红树林群落正处于演替的中期阶段,白骨壤和白骨壤+桐花树群丛将逐步演替为以木榄为优势种的群丛。此外,红树植物的种群动态受到自身繁殖特性、生境条件、种内和种间竞争、虫害等多种因素的调控。     

相岭山系大、小熊猫主食竹类峨热竹的生长发育与环境因子间的相互关系

1994～1996年,在相岭山系冕宁县治勒自然保护区设点,对大熊猫和小熊猫主食竹类峨热竹与其它环境生态因子间的相互关系进行了长达3a的研究。研究结果表明,峨热竹的生长发育与环境生态因子如海拔、郁闭度、坡度和坡向之间有极其显著的相关关系,环境因子对其株高、基径、密度、发笋率、老笋比例和成竹死亡率等有较大的影响。随海拔高度的增加,竹子变矮变细,老笋比例下降;上层乔木郁闭度增加,竹子变稀,发笋率、老笋比例和成竹死亡率均降低。坡度增大,竹子变稀并且细而矮。阳坡的竹子率发笋高于阴坡。