Identification of polypeptides specific to rachis abscission zone cells of Sambucus nigra

Specific polypeptides and antigenic determinants in abscission zone cells of the leaf rachis of Sambucus nigra L. (elderberry) were identified. Extracts from abscission zone tissue (OZ) and from ethylene-treated abscission zone tissue after separation (Zone) were probed, using sodium dodecyl sulphate-polyacrylamide gel electrophoresis (SDS-PAGE) and immunological techniques, for unique peptide components absent from neighbouring non-zone mid-rachis tissue (MR). Ouchterlony immuno-diffusion revealed differences in the spectrum of antigenic determinants possessed by each tissue type when challenged with antiserum raised against OZ. Immuno-electrophoresis showed a basic polypeptide which is expressed preferentially in the abscission zone.
Immune-competition of OZ, MR and Zone extracts using immuno-affinity column chromatography has identified polypeptides of ca 34, ca 32, and ca 28 kDa which are (up to the limits of detection) abscission-cell specific. An antibody raised against the ca 34 kDa polypeptide recognises a peptide of ca 34 kDa present in OZ and Zone. This peptide is absent from MR.
These results suggest that the specific positional differentiation of ethylene-responsive target cells which constitute the leaf rachis abscission zone in S. nigra is accompanied by the expression of zone-cell-specific antigenic determinants which are not expressed by non-target neighbouring tissue.     

Functionally important positions can comprise the majority of a protein's architecture

Concomitant with the genomic era, many bioinformatics programs have been developed to identify functionally important positions from sequence alignments of protein families. To evaluate these analyses, many have used the LacI/GalR family and determined whether positions predicted to be "important" are validated by published experiments. However, we previously noted that predictions do not identify all of the experimentally important positions present in the linker regions of these homologs. In an attempt to reconcile these differences, we corrected and expanded the LacI/GalR sequence set commonly used in sequence/function analyses. Next, a variety of analyses were carried out (1) for the entire LacI/GalR sequence set and (2) for a subset of homologs with functionally-important "YxPxxxAxxL" motifs in their linkers. This strategy was devised to determine whether predictions could be improved by knowledge-based sequence sorting and-for some analyses-did increase the number of linker positions identified. However, two functionally important linker positions were not reliably identified by any analysis. Finally, we compared the new predictions to all known experimental data for E. coli LacI and three homologous linkers. From these, we estimate that >50% of positions are important to the functions of the LacI/GalR homologs. In corollary, neutral positions might occur less frequently and might be easier to detect in sequence analyses. Although analyses have successfully guided mutations that partially exchange protein functions, a better experimental understanding of the sequence/function relationships in protein families would be helpful for uncovering the remaining rules used by nature to evolve new protein functions.     

Probing the sweet determinants of brazzein: wild-type brazzein and a tasteless variant, brazzein-ins(R18a-I18b), exhibit different pH-dependent NMR chemical shifts

Brazzein is a small, intensely sweet protein. As a probe of the functional properties of its solvent-exposed loop, two residues (Arg-Ile) were inserted between Leu18 and Ala19 of brazzein. Psychophysical testing demonstrated that this mutant is totally tasteless. NMR chemical shift mapping of differences between this mutant and brazzein indicated that residues affected by the insertion are localized to the mutated loop, the region of the single alpha-helix, and around the Cys16-Cys37 disulfide bond. Residues unaffected by this mutation included those near the C-terminus and in the loop connecting the alpha-helix and the second beta-strand. In particular, several residues of brazzein previously shown to be essential for its sweetness (His31, Arg33, Glu41, Arg43, Asp50, and Tyr54) exhibited negligible chemical shift changes. Moreover, the pH dependence of the chemical shifts of His31, Glu41, Asp50, and Tyr54 were unaltered by the insertion. The insertion led to large chemical shift and pKa perturbation of Glu36, a residue shown previously to be important for brazzein's sweetness. These results serve to refine the known sweetness determinants of brazzein and lend further support to the idea that the protein interacts with a sweet-taste receptor through a multi-site interaction mechanism, as has been postulated for brazzein and other sweet proteins (monellin and thaumatin).     

Factors and consequences of a non-functional alary polymorphism inPyrrhocoris apterus (Heteroptera: Pyrrhocoridae)

Functional alary polymorphisms have been studied rather extensively in several insect species. This review article deals with factors controlling wing polymorphism in a flightless species,Pyrrhocoris apterus (L.), and discusses its adaptive significance and mechanisms for their persistence under natural conditions. The macropterous morph is determined by a recessive allele whose penetrance depends on photoperiod and temperature. Natural populations of this species contain a small fraction of flightless macropters. The disadvantages of being a macropter (increase of development time, decrease of fecundity) are minimal, while the benefit may consist in the tendency to prereproductive arrest of ovarian development in teneral females. It prevents establishing a second generation which would mostly die during the next winter. The mechanism of alary morph regulation may be an ancestral trait linkingP. apterus with other polymorphic Heteroptera, while its decreased penetrance may be a derivative character. Variation in fitness due to alary morphs is small compared to the one associated with differences in body size. The latter is environmentally determined, and not linked to the genetic basis of wing polymorphism. In the “mosaic” of phenotypes of various size the significance of the genetic macroptery may be close to neutral.     

Seasonal succession,standing crop and determinants of primary productivity of the phytoplankton of Ministik Lake,Alberta, Canada

Ministik Lake (longitude 113°01; latitude 53°21), a well-mixed, shallow (mean depth 1.83 m), eutrophic lake is characterized by eutrophic chlorococcalean and cyanophycean phytoplankton associations, and little change in standing crop size with increasing depth. Standing crops and primary productivity are low during the winter but pronounced spring and late summer/early autumn maxima occur. Mean yearly areal standing crop (B) and primary productivity (A) were 199.2 mg m^–2 chlorophyll a and 319.5 mg C hr^–1 m^–2 respectively. Annual productivity was estimated at 1399,6 g C m^–2yr^–1. The mean increase in the extinction coefficient () per unit increase in standing crop (B) was 0.03 In units m^–1. High non-algal light attenuation (q) occurred averaging 46% which prevented the ratio B from attaining more than 74.2% of the theoretical maximum except once when selfshading occurred. Insignificant relationships existed between B (mg m^–3 chlorophyll a) and A_max (mg C hr^–1 m^–3), A and B and A and B. Close correlations existed between A and A_max/ and A and I₀ (W m^–2). The depth of the euphotic zone (Z_eu) varied between 0.6 and 2.0 m; the average relationship between z_eu and was z_eu = 3.78/_te, and the mean standing crop in the euphotic zone represented 58.3% of the theoritical maximum. The high _q values made the model of Talling (1957) inapplicable to this lake. The Q₁₀ value for the lake was 1.20. _max (mg C chlorophyll a ^–1 hr^–1) was closely related to both temperature and irradiance, and depressed by high pH values.Growth of the cyanophycean algae was correlated with temperature, chlorophycean algae with phosphate-phosphorus and temperature and the diatoms with dissolved silica and phosphate-phosphorus, but only in the case of Chaetoceros elmorii did any nutrient appear limiting. Indirect evidence that free CO₂ limited photosynthetic rates is provided by the _max:pH relationship.     

Bayesian quantification of ecological determinants of outcrossing in natural plant populations: Computer simulations and the case study of biparental inbreeding in English yew

The mating system is a central parameter of plant biology because it shapes their ecological and evolutionary properties. Therefore, determining ecological variables that influence the mating system is important for a deeper understanding of the functioning of plant populations. Here, using old concepts and recent statistical developments, we propose a new statistical tool to make inferences about ecological determinants of outcrossing in natural plant populations. The method requires codominant genotypes of seeds collected from maternal plants within different locations. Using extensive computer simulations, we demonstrated that the method is robust to the issues expected for real‐world data, including the Wahlund effect, inbreeding and genotyping errors such as allele dropout and allele misclassification. Furthermore, we showed that the estimates of ecological effects and outcrossing rates can be severely biased if genotyping errors and genetic differentiation are not treated explicitly. Application of the new method to the case study of a dioecious tree (Taxus baccata) allowed revealing that female trees that grow in lower local densities have a greater tendency towards mating with relatives. Moreover, we also demonstrated that biparental inbreeding is higher in populations that are characterized by a longer mean distance between trees and a smaller mean trunk perimeter. We found these results to agree with both the theoretical predictions and the history of English yew.     

Refugia under threat: Mass bleaching of coral assemblages in high‐latitude eastern Australia

Environmental anomalies that trigger adverse physiological responses and mortality are occurring with increasing frequency due to climate change. At species' range peripheries, environmental anomalies are particularly concerning because species often exist at their environmental tolerance limits and may not be able to migrate to escape unfavourable conditions. Here, we investigated the bleaching response and mortality of 14 coral genera across high‐latitude eastern Australia during a global heat stress event in 2016. We evaluated whether the severity of assemblage‐scale and genus‐level bleaching responses was associated with cumulative heat stress and/or local environmental history, including long‐term mean temperatures during the hottest month of each year (SST_LTMAX), and annual fluctuations in water temperature (SST_VAR) and solar irradiance (PARZ_VAR). The most severely‐bleached genera included species that were either endemic to the region (Pocillopora aliciae) or rare in the tropics (e.g. Porites heronensis). Pocillopora spp., in particular, showed high rates of immediate mortality. Bleaching severity of Pocillopora was high where SST_LTMAX was low or PARZ_VAR was high, whereas bleaching severity of Porites was directly associated with cumulative heat stress. While many tropical Acropora species are extremely vulnerable to bleaching, the Acropora species common at high latitudes, such as A. glauca and A. solitaryensis, showed little incidence of bleaching and immediate mortality. Two other regionally‐abundant genera, Goniastrea and Turbinaria, were also largely unaffected by the thermal anomaly. The severity of assemblage‐scale bleaching responses was poorly explained by the environmental parameters we examined. Instead, the severity of assemblage‐scale bleaching was associated with local differences in species abundance and taxon‐specific bleaching responses. The marked taxonomic disparity in bleaching severity, coupled with high mortality of high‐latitude endemics, point to climate‐driven simplification of assemblage structures and progressive homogenisation of reef functions at these high‐latitude locations.     

Phenotypic typing, technological properties and safety aspects of Lactococcus garvieae strains from dairy environments

AIMS: To characterize Lactococcus garvieae strains of dairy origin and to determine their technological properties and safety for their possible use in starter culture preparation. METHODS AND RESULTS: Forty-seven L. garvieae isolates, recovered from two artisanal Italian cheeses were studied, in comparison with 12 fish isolates and the type strain of the species. Phenotypic typing revealed that the strains could be differentiated on the basis of their ecological niche of origin in lactose positive strains (all isolated from dairy sources) and lactose negative strains (all isolated from fish). Furthermore, the strains exhibited a high degree of physiological variability, showing the presence of 26 different biotypes. The strains possessed moderate acidifying and proteolytic activities and did not produce bacteriocins. A safety investigation revealed that all strains were sensitive to vancomycin and moderately resistant to kanamycin; some biotypes were tetracycline resistant. Production of biogenic amines or presence of genes encoding virulence determinants occurred in some isolates. CONCLUSIONS: The prevalence of L. garvieae in some artisanal Italian cheeses can be linked to the typicity of the products. Although in a few cases an antimicrobial resistance or a presence of virulence determinants may imply a potential hygienic risk, most of the strains showed positive properties for their possible adjunction in a starter culture preparation, to preserve the natural bacterial population responsible for the typical sensorial characteristics of the traditional raw milk cheeses. SIGNIFICANCE AND IMPACT OF THE STUDY: L. garvieae strains can be considered an important part of the microbial population associated with the natural fermentation of artisanal Italian cheeses. A deepened characterization of the strains may aid in understanding the functional and ecological significance of their presence in dairy products and in selecting new strains for the dairy industry.