Model-based analysis on the relationship of signal quality to real-time extraction of information in bioprocesses

Quality by design (QbD) is a current structured approach to design processes yielding a quality product. Knowledge and process understanding cannot be achieved without proper experimental data; hence requirements for measurement error and frequency of measurement of bioprocess variables have to be defined. In this contribution, a model-based approach is used to investigate impact factors on calculated rates to predict the obtainable information from real-time measurements (= signal quality). Measurement error, biological activity, and averaging window (= period of observation) were identified as biggest impact factors on signal quality. Moreover, signal quality has been set in context with a quantifiable measure using statistical error testing, which can be used as a benchmark for process analytics and exploitation of data. Results have been validated with data from an E. coli batch process. This approach is useful to get an idea which process dynamics can be observed with a given bioprocess setup and sampling strategy beforehand.     

蛋氨酸羟基类似物对肉鸡骨骼性能和基因表达的影响

本文以雄性罗斯肉鸡为材料,探讨饲粮添加不同蛋氨酸源:蛋氨酸(DLM)、蛋氨酸羟基类似物(HMTBA)和蛋氨酸羟基类似物钙盐(HMTB-Ca)对肉鸡骨骼性能和基因表达的影响。结果表明,HMTBA和HMTB-Ca能提高肉鸡终体重、日增重、血液GSH/GSSG比值、抗氧化酶(CAT)水平、总抗氧化能力(T-AOC)、骨骼长度、重量、骨骼指数(p<0.05)。不同蛋氨酸源对肉仔鸡采食量、料重比和灰分含量影响不显著(p>0.05),HMTBA组骨生长分化因子-5(GDF-5)表达量显著上升(p<0.05)。HMTB-Ca显著提高骨骼强度、钙磷含量,下调金属基质蛋白酶-2(MMP-2)、金属基质蛋白酶-9(MMP-9)的表达水平(p<0.05)。由此可知,采食蛋氨酸羟基类似物及其钙盐饲粮,可提高肉鸡体增重,改善血液氧化还原状态,改善骨骼生长发育,其中HMTB-Ca对骨骼作用更显著。     

Crystallography with online optical and X-ray absorption spectroscopies demonstrates an ordered mechanism in copper nitrite reductase

Nitrite reductases are key enzymes that perform the first committed step in the denitrification process and reduce nitrite to nitric oxide. In copper nitrite reductases, an electron is delivered from the type 1 copper (T1Cu) centre to the type 2 copper (T2Cu) centre where catalysis occurs. Despite significant structural and mechanistic studies, it remains controversial whether the substrates, nitrite, electron and proton are utilised in an ordered or random manner. We have used crystallography, together with online X-ray absorption spectroscopy and optical spectroscopy, to show that X-rays rapidly and selectively photoreduce the T1Cu centre, but that the T2Cu centre does not photoreduce directly over a typical crystallographic data collection time. Furthermore, internal electron transfer between the T1Cu and T2Cu centres does not occur, and the T2Cu centre remains oxidised. These data unambiguously demonstrate an ‘ordered’ mechanism in which electron transfer is gated by binding of nitrite to the T2Cu. Furthermore, the use of online multiple spectroscopic techniques shows their value in assessing radiation-induced redox changes at different metal sites and demonstrates the importance of ensuring the correct status of redox centres in a crystal structure determination. Here, optical spectroscopy has shown a very high sensitivity for detecting the change in T1Cu redox state, while X-ray absorption spectroscopy has reported on the redox status of the T2Cu site, as this centre has no detectable optical absorption.     

An Overview of Metal Pollution in the Western Harbour of Alexandria,Egypt

Limited data are available on the concentration of metals in sediments in the Western Harbour of Alexandria. The most comprehensive record is from a survey conducted more than a decade ago. Industrial and human activities in and around this area have increased dramatically in the last 20 years. The purpose of this study was to determine the concentrations of heavy metals in surfacial bottom sediments of the harbor, to assess their potential biological effects and to identify their possible sources. Sediment samples from 21 stations throughout the harbor were analyzed for grain size, total organic carbon content (TOC), and metals (Al, As, Ba, Be, Cd, Cr, Cu, Fe, Mg, Mn, Ni, Pb, Se, Sn, V, and Zn) to assess the extent of contamination in the area. The results indicated that concentrations of metals in the sediments varied widely depending on the location. High levels of metals were observed in the Arsenal Basin and the outfall area of El Mahmoudiya Canal in the inner harbor. The concentrations of metals were found to be higher than those recorded in the previous study. However, with some exceptions, most of the changes in the metal concentrations could be accounted for by the variations in aluminum, which represents the variations in mineralogy and grain size, indicating that the majority of the metals were of “natural” origin. The present data were also compared with results from other areas.     

Plant species loss in an urban area (Turnhout, Belgium) from 1880 to 1999 and its environmental determinants

Information from four archival literature sources from the late 19^th century was matched to present-day plant species distribution data for the region of Turnhout (Belgium) and for 15 smaller sub-regions within this region. In the entire study area 25% of the species recorded in the late 19^th century went extinct during the 20^th century and the extinction rate doubled at the more detailed sub-region level. Binary survival-extinction data and continuous residuals from a linear regression between historical and present-day abundance categories were used to investigate underlying ecological factors of change including habitat preference, ecological amplitude and life strategy. Species increasing relative to the overall trend were generally correlated with nutrient-rich habitats while declining species were more associated with nutrient-poor situations. Generalist species have become relatively more common whilst habitat specialists have strongly declined, resulting in a flora with many ‘losers’ and a few tolerant ‘winners’. The winners are often competitive species while the losers are mainly stress-tolerating species and species with combined life strategies (e.g. SC, SR). Correlations between the decline of historically present habitats and extinction rates of related habitat specialist species show clear trends. We suggest the most important factors involved in changes in flora diversity and vegetation composition are habitat loss due to urbanization and habitat deterioration, mainly due to agricultural intensification.     

碳氮源对转基因鱼腥藻Anabaena sp.PCC7120培养的影响

对碳源、氮源种类和用量对转rhTNF-α基因鱼腥藻7120（Anabaena sp.PCC7120）培养的影响进行了研究,发现最适碳源为蔗糖,最适氮源为NaNO3,最佳用量分别为9g/L和2．25g/L,此时生物量远高于自养方式,达2．52g/L,比相同条件下在BG－11培养基培养高71．66％,ATNF－α表达量为16％－22％,生物活性为10^5U/mg。     

不同产地山芹萸种实性状变异分析

山茱萸〔Ｍａｃｒｏｃａｒｐｉｕｍｏｆｆｉｃｉｎａｌｉｓ (Ｓｉｅｂ .ｅｔＺｕｃｃ .)Ｎａｋａｉ〕为重要的木本药用植物 ,果皮名曰萸肉 ,枣皮 ,果肉中含有 16种氨基酸、2 3种微量元素以及丰富的维生素、有机酸、鞣质、多种甙、黄酮等 ,具有多种药用功效 ,是名贵的中药[1] 。同时 ,山茱萸又是一种非常好的观赏树种 ,具有较高的经济价值和良好的开发应用前景[2 ] 。山茱萸的栽培已有 10 0 0多年的历史 ,但对其研究主要集中在营养和药用成分分析、种子休眠以及栽培技术等[3～ 5] 。作者分析了不同产地、不同母树山茱萸种实性状的变异状况 ,…     

UV-B辐射对香蕉光合作用和不同氮源利用的影响

生长在NO3^--N、NH4^--N和NH4NO3－N的香蕉叶片有相近似的最大光合速率,UV－B辐射引起生长在不同氮源的香蕉叶片光合速率、表现量子产率和光肥利用效率的降低。UV－B辐射使生长在不同氮源的植株叶面积干重和叶氮含是降低。生长在NH4^--N的植株Vcmax和Jmax均较生长在其它氮源的高。UV－B辐射引起生长在NH4^-N的植株Vcmax和Jmax降低较相同处理的NO3^-－N和NH4NO3－N植株明显,表明生长在NH4^ －N的香蕉对UV－B辐射更加敏感。UV－B辐射改变植株的叶片的碳氢比和碳氮比。经过UV－B辐射处理的NH4^ －N生长植株的碳氮生长在NO3^--N和NH4NO3－N的低。UV－B辐射可能改变植株对不同氮源的吸收利用,从而引起碳氮代谢和酸碱调节的变化。UV－B辐射降低叶氮在Rubisco和生物力能学组分的分配系数,可能使这些组分合成减少,使叶片光调节的变化。UV－B辐射降低叶氮在Rubisco和生物力能学组分的分配系数,可能使这些组分合成减少,使叶片光合速率下降。结果表明,生长在不同氮源的香蕉植树对UV－B辐射有不同响应,NH4^ -N有利于主要光合参数增高,但其对UV－B辐射亦最为敏感。氮供应受限制或植株生长在中性盐如NH4NO3－N则对UV－B辐射不甚敏感。     

Enhanced nisin and pediocin production on whey supplemented with different nitrogen sources

Production of nisin and pediocin were followed, respectively, in Lactococcus lactis subsp. lactis CECT 539 and Pediococcus acidilactici NRRL B-5627 grown with lactose and four different nitrogen sources. Neither NH₄Cl nor glycine improved production of the bacteriocins. Both yeast extract and Casitone increased pediocin production from 55 BU ml^–1 to 195 BU ml^–1 and 185 BU ml^–1, respectively. Nisin increased from 21 BU ml^–1 to 74 BU ml^–1 and 59 BU ml^–1 with these nitrogen sources.