Interactive controls of herbivory and fluvial dynamics on landscape vegetation patterns on the Tanana River floodplain, interior Alaska

Aim  We examined the interactive effects of mammalian herbivory and fluvial dynamics on vegetation dynamics and composition along the Tanana River in interior Alaska.
Location  Model parameters were obtained from field studies along the Tanana River, Alaska between Fairbanks (64°50.50' N, 147°43.30' W) and Manley Hot Springs (65°0.0' N, 150°36.0' W).
Methods  We used a spatially explicit model of landscape dynamics (ALFRESCO) to simulate vegetation changes on a 1-year time-step. The model was run for 250 years and was replicated 100 times.
Results  Increases in herbivory decreased the proportion of early successional vegetation and increased the proportion of late successional vegetation on the simulated landscape. Erosion and accretion worked as antagonists to herbivory, increasing the amount of early successional vegetation and decreasing the amount of late successional vegetation. However, the interactive effects of herbivory and erosion/accretion were especially important in determining system response, particularly in early seral vegetation types. High erosion rates, when coupled with low herbivory, greatly increased the proportion of willow on the landscape. When coupled with high herbivory, however, they greatly increased the proportion of alder on the landscape. At low levels of herbivory, alder abundance peaked at intermediate levels of erosion/accretion.
Main conclusions  Neither erosion/accretion nor herbivory produced consistent landscape patterns that could be predicted independently of the other. These findings underscore the importance of the interactive effects of biotic and abiotic disturbances in shaping large-scale landscape vegetation patterns in boreal floodplain ecosystems – systems traditionally thought to be driven primarily by abiotic disturbance alone.     

The decline of tree diversity on newly isolated tropical islands: A test of a null hypothesis and some implications

Summary Six islands, each less than a hectare in area, were isolated in about 1913 from the mainland of central Panamá by the rising waters of Gatun Lake. By 1980, the diversity of trees on all but one of these islands was far lower than on mainland plots of comparable size. A restricted subset of tree species has spread on these islands, notablyProtium panamense, Scheelea zonensis, Oenocarpus panamanus andSwartzia simplex. We constructed a null model to predict how chance would change tree diversity and the similarity of tree species compositions of different islands, assuming that each mature tree has equal chances of dying and/or reproducing, regardless of its species. This model cannot account for the diminished diversity of the changes in vegetation on these islands: some factors must be favoring a particular set of tree species.Two factors, exposure to wind and absence of mammals, seem needed to bring about the vegetation changes observed on these small islands. Their vegetation shows many signs of wind damage and of adaptation to resist wind, reflecting its exposure to dry season winds and storm winds sweeping across the lake from the west. Their most common tree species appear to have spread because mammals rarely visit these small and isolated islands. Seed of these common species are normally much eaten by mammals and do not need burial by mammals to escape insect attack.A thorough grasp of plant—animal interactions is needed to understand the events that have taken place on these islands. Identifying those keystone animals essential for maintaining plant diversity is a necessary element of reserve design and forest management in the tropics.The US government has the right to retain a non-exclusive, royalty-free license in and to any copyright covering this paper.     

Sensitivity of marine fish thermal habitat models to fishery data sources

Statistical models built using different data sources and methods can exhibit conflicting patterns. We used the northern stock of black sea bass (Centropristis striata) as a case study to assess the impacts of using different fisheries data sources and laboratory‐derived physiological metrics in the development of thermal habitat models for marine fishes. We constructed thermal habitat models using generalized additive models (GAMs) based on various fisheries datasets as input, including the NOAA Northeast Fisheries Science Center (NEFSC) bottom trawl surveys, various inshore fisheries‐independent trawl surveys (state waters), NEFSC fisheries‐dependent observer data, and laboratory‐based physiological metrics. We compared each model''s GAM response curve and coupled them to historical ocean conditions in the U.S. Northeast Shelf using bias‐corrected ocean temperature output from a regional ocean model. Thermal habitat models based on shelf‐wide data (NEFSC fisheries‐dependent observer data and fisheries‐independent spring and fall surveys) explained the most variation in black sea bass presence/absence data at ~15% deviance explained. Models based on a narrower range of sampled thermal habitat from inshore survey data in the Northeast Area Monitoring and Assessment Program (NEAMAP) and the geographically isolated Long Island Sound data performed poorly. All models had similar lower thermal limits around 8.5℃, but thermal optima, when present, ranged from 16.7 to 24.8℃. The GAMs could reliably predict habitat from years excluded from model training, but due to strong seasonal temperature fluctuations in the region, could not be used to predict habitat in seasons excluded from training. We conclude that survey data source can greatly impact development and interpretation of thermal habitat models for marine fishes. We suggest that model development be based on data sources that sample the widest range of ocean temperature and physical habitat throughout multiple seasons when possible, and encourage thorough consideration of how data gaps may influence model uncertainty.     

海南岛不同地形上某些土壤化学性质的多样性分析

多样性指数长时间以来在生态学领域被用于分析不同生态体的发生规律．将类似手段用于某些土壤化学性质(土壤pH值、表层阳离子代换量和表层有机质含量)多样性的分析中,讨论了基于海南岛土壤一地体数字化数据库(SOTER),通过对不同地形上土壤pH值、表层阳离子代换量和表层有机质含量类别SOTER单元的丰富度指数(S)、多样性指数(Shannon指数H’)和均匀度指数(Pielou E)的计算,建立了类别多度分布模型,并在地理信息系统环境中实现了海南岛不同地形上土壤化学性质多样性分析的数字化表达．研究表明,上述研究路线具有可操作性。几种多样性指数和多度分布模型的建立可以较好地反映不同地形上土壤化学性质类别的空间变异特点．因此,SOTER单元作为土壤性质多样性的测度单元是可行的．     

Saltatory search: a theoretical analysis

Many animal search in a saltatory fashion: they move forward,pause briefly, and move forward again. Although many optimal-foragingmodels have been developed, most do not address how an animalsearches for food. We view search strategies as "time-distance"functions to allow not only for the possibility of oscillationsin body speed, as implied by saltatory search, but other movementpatterns as well, including cruise search. The key feature ofour models is distinguishing between the body position and thescan position (where the forager is looking). We see the varyingmovement of saltatory search as a consequence of the curvaturein the functions that relate body speed to benefits (Jensen'sinequality)     

The invisible niche: Weakly density-dependent mortality and the coexistence of species

Weakly density-dependent effects, characterized by fractional scaling exponents close to one, are rarely studied in the ecological literature. Here, we consider the effect of an additional weakly density-dependent term on a simple competition model. Our investigation reveals that weak density-dependence opens up an “invisible niche”. This niche does not constitute a new mechanism for coexistence, but is a previously unexplored consequence of known mechanisms. In the invisible niche a weaker competitor can survive at very low density. Coexistence thus requires large habitat size. Such niches, if found in nature, would have a direct impact on species-area laws and species-abundance curves and should therefore receive more attention.     

Structural insights into human microsomal epoxide hydrolase by combined homology modeling,molecular dynamics simulations,and molecular docking calculations

A new homology model of human microsomal epoxide hydrolase was derived based on multiple templates. The model obtained was fully evaluated, including MD simulations and ensemble‐based docking, showing that the quality of the structure is better than that of only previously known model. Particularly, a catalytic triad was clearly identified, in agreement with the experimental information available. Analysis of intermediates in the enzymatic mechanism led to the identification of key residues for substrate binding, stereoselectivity, and intermediate stabilization during the reaction. In particular, we have confirmed the role of the oxyanion hole and the conserved motif (HGXP) in epoxide hydrolases, in excellent agreement with known experimental and computational data on similar systems. The model obtained is the first one that fully agrees with all the experimental observations on the system. Proteins 2017; 85:720–730. © 2016 Wiley Periodicals, Inc.