内蒙古中东部草原羽茅Epichloё属内生真菌的分布及rDNA-ITS序列系统发育

对内蒙古中东部地区分布的羽茅6个地理种群的染菌率进行了调查,采集种子并从中分离得到不同形态型的内生真菌,选取其中的19株进行rDNA-ITS片段的扩增、克隆、测序和系统发育分析。结果表明:(1)6个样地羽茅种群内生真菌感染率除西乌旗为96.7%外,其他5个样地均为100%,表明内生真菌侵染羽茅并非偶然现象,二者之间存在一种稳定的共生关系。(2)ITS和5.8S序列得到的N-J树显示,相对于Epichloё属的其他参考菌株,不同地理种群羽茅中的内生真菌聚为一类,形成一个具有97%支持强度的分支。由此推测,不同地理种群羽茅中的内生真菌具有相同的起源点。(3)结合形态观察结果和rDNA-ITS序列分析结果可以看出,羽茅内生真菌种群的优势种亲缘关系较近,可能起源于同一种内生真菌;但由于其地理分布广、气候差异大、群落类型差别也较大,从而造成不同地理种群内生真菌形态上的分化以及种群间明显的遗传分化和较高的遗传多样性。     

Richness of cultivable endophytic fungi along an altitudinal gradient in wet forests of Costa Rica

We collected various plant species along an altitudinal gradient ranging from 400 to 2900 m in tropical wet forests of Costa Rica, isolated the associated endophytic fungi, and performed bioinformatic analyses to determine whether changes in altitude are related to changes in their richness and community structure. We showed that the richness of endophytic fungi varied along the altitudinal gradient, being higher in the lowest stratum and decreasing as elevation increases. Each stratum presented a particular composition and diversity of endophytes, although the whole population was characterized by the presence of a few dominant and apparently ubiquitous species, coexisting with a number of less abundant species that presented a more limited host range. These results have important implications for better understanding the role of altitude on the distribution and composition of endophytic fungal populations in tropical forests, but also for maximizing the number and diversity of endophytic isolates in bioprospecting campaigns.     

Protein profiling and angiogenic effect of hypoxia-cultured human umbilical cord blood-derived mesenchymal stem cells in hindlimb ischemia

The aim of the present study was to investigate protein profiles of human umbilical cord blood-derived mesenchymal stem cells (hUCB-MSCs) cultured in normoxic (21% O₂) and hypoxic (1% O₂) conditions, and evaluate oxygenation effects on angiogenesis in an ischemic hindlimb mouse model using a modified ischemic scoring system. Hypoxic conditions did not change the expression of phenotypic markers and increased adipogenesis and chondrogenesis. Epidermal growth factor (EGF), transforming growth factor alpha (TGF-α), TGF-β RII, and vascular endothelial growth factor (VEGF) were upregulated in the conditioned medium of hypoxic hUCB-MSCs, which are commonly related to angiogenesis and proliferation of biological processes by Gene Ontology. In the Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway, significant enrichment of the phosphorylation of abelson murine leukemia viral oncogene homolog 1 (ABL1) (Phospho-Tyr204) and B-cell lymphoma-extra large (BCL-XL) (Phospho-Thr47) as anti-apoptotic pathways was observed in hypoxic hUCB-MSCs. Furthermore, hypoxic conditions induced proliferation and migration, and reduced apoptosis of hUCB-MSCs in vitro. Based on the results of protein antibody array, we evaluated the angiogenic effects of injecting normoxic or hypoxic hUCB-MSCs (1 × 10⁶) into the ischemic hindlimb muscles of mice. Ischemic scores and capillary generation were significantly greater in the hypoxic hUCB-MSC injection group than in the normoxic hUCB-MSC group. Our findings demonstrate that culturing hUCB-MSCs in hypoxic conditions not only significantly enriches phosphorylation in the anti-apoptosis pathway and enhances the secretion of several angiogenic proteins from cells, but also alleviates ischemic injury of hindlimb of mice.     

Renewed interests in the discovery of bioactive actinomycete metabolites driven by emerging technologies

Actinomycetes are prolific sources of bioactive molecules. Traditional workflows including bacterial isolation, fermentation, metabolite identification and structure elucidation have resulted in high rates of natural product rediscovery in recent years. Recent advancements in multi-omics techniques have uncovered cryptic gene clusters within the genomes of actinomycetes, potentially introducing vast resources for the investigation of bioactive molecules. While developments in culture techniques have allowed for the fermentation of difficult-to-culture actinomycetes, high-throughput metabolite screening has offered plenary tools to accelerate hits discovery. A variety of new bioactive molecules have been isolated from actinomycetes of unique environmental origins, such as endophytic and symbiotic actinomycetes. Synthetic biology and genome mining have also emerged as new frontiers for the discovery of bioactive molecules. This review covers the highlights of recent developments in actinomycete-derived natural product drug discovery.     

Advanced technologies for improved expression of recombinant proteins in bacteria: perspectives and applications

Prokaryotic expression systems are superior in producing valuable recombinant proteins, enzymes and therapeutic products. Conventional microbial technology is evolving gradually and amalgamated with advanced technologies in order to give rise to improved processes for the production of metabolites, recombinant biopharmaceuticals and industrial enzymes. Recently, several novel approaches have been employed in a bacterial expression platform to improve recombinant protein expression. These approaches involve metabolic engineering, use of strong promoters, novel vector elements such as inducers and enhancers, protein tags, secretion signals, high-throughput devices for cloning and process screening as well as fermentation technologies. Advancement of the novel technologies in E. coli systems led to the production of “difficult to express” complex products including small peptides, antibody fragments, few proteins and full-length aglycosylated monoclonal antibodies in considerable large quantity. Wacker's secretion technologies, Pfenex system, inducers, cell-free systems, strain engineering for post-translational modification, such as disulfide bridging and bacterial N-glycosylation, are still under evaluation for the production of complex proteins and peptides in E. coli in an efficient manner.

This appraisal provides an impression of expression technologies developed in recent times for enhanced production of heterologous proteins in E. coli which are of foremost importance for diverse applications in microbiology and biopharmaceutical production.     

The role of novel forest ecosystems in the conservation of wood‐inhabiting fungi in boreal broadleaved forests

The increasing human impact on the earth's biosphere is inflicting changes at all spatial scales. As well as deterioration and fragmentation of natural biological systems, these changes also led to other, unprecedented effects and emergence of novel habitats. In boreal zone, intensive forest management has negatively impacted a multitude of deadwood‐associated species. This is especially alarming given the important role wood‐inhabiting fungi have in the natural decay processes. In the boreal zone, natural broad‐leaved‐dominated, herb‐rich forests are threatened habitats which have high wood‐inhabiting fungal species richness. Fungal diversity in other broadleaved forest habitat types is poorly known. Traditional wood pastures and man‐made afforested fields are novel habitats that could potentially be important for wood‐inhabiting fungi. This study compares species richness and fungal community composition across the aforementioned habitat types, based on data collected for wood‐inhabiting fungi occupying all deadwood diameter fractions. Corticioid and polyporoid fungi were surveyed from 67 130 deadwood particles in four natural herb‐rich forests, four birch‐dominated wood pastures, and four birch‐dominated afforested field sites in central Finland. As predicted, natural herb‐rich forests were the most species‐rich habitat. However, afforested fields also had considerably higher overall species richness than wood pastures. Many rare or rarely collected species were detected in each forest type. Finally, fungal community composition showed some divergence not only among the different habitat types, but also among deadwood diameter fractions. Synthesis and applications: In order to maintain biodiversity at both local and regional scales, conserving threatened natural habitat types and managing traditional landscapes is essential. Man‐made secondary woody habitats could provide the necessary resources and serve as surrogate habitats for many broadleaved deadwood‐associated species, and thus complement the existing conservation network of natural forests.     

Evidence for a substantial host‐use bottleneck following the invasion of an exotic,polyphagous weevil

1. The successful establishment of novel plant–insect interactions may depend on the availability of suitable hosts, which itself is influenced by the inherent flexibility of the herbivore for the native plants in its new range. The polyphagous beech leaf mining weevil, Orchestes fagi L., is a recent invader to eastern Canada, and while beech is a primary host, it remains unclear the extent to which it might also utilise co‐occurring secondary hosts, as has been observed in its native European range. 2. A combination of field and laboratory feeding trials were used to quantify weevil secondary host use. Based on its expansive native host range in Europe, it was predicted that American beech (Fagus grandifolia Ehrh.), as well as several additional plant species, would be susceptible to weevil damage. 3. Contrary to this prediction, weevil feeding was almost entirely exclusive to beech in both the field and laboratory feeding trials. This result is further supported by field observations that revealed an absence of weevils and eggs on species other than beech. In general, the lack of pre‐diapause feeding on any alternate host species represented an extreme departure from feeding habits observed within the native range. 4. Overall, this host‐use bottleneck suggests that the adoption of a novel primary host by O. fagi, in this case American beech, may remove the normal requirement for secondary hosts and suggests a significant departure from native feeding habits with possible consequences for related life‐history parameters such as overwintering survival and fecundity.     

Geographical range and host breadth of Sebacina orchid mycorrhizal fungi associating with Caladenia in south‐western Australia

Specialized mycorrhizal interactions have the potential to limit the geographical range of plant species and contribute to reproductive isolation. We investigated these predictions in Caladenia (Orchidaceae) from south‐western Australia, a group known to have specialized mycorrhizal associations with the genus Sebacina s.l. Sequencing of fungal isolates from 47 of the 136 species of Western Australian Caladenia was undertaken to resolve the geographical range and habitat preferences of mycorrhizal fungal operational taxonomic units (OTUs) and their host breadth in Caladenia. Eight different fungal OTUs were used by Caladenia, with the more frequently detected OTUs occurring in a wide range of habitats and geographical regions. Given the comparatively narrow geographical ranges of most Western Australian Caladenia taxa, this suggests that the geographical ranges of fungal OTUs are unlikely to limit the geographical range of Caladenia spp. Extensive sharing of fungal OTUs between closely related orchid species was detected, suggesting that in the main there is little potential for mycorrhizal fungi to contribute to reproductive isolation between Caladenia spp. Our data mostly support previous work suggesting high mycorrhizal specificity in Caladenia, but this may not be the case in all subgenera, highlighting that Caladenia may offer powerful opportunities for investigating the evolution of specialized mycorrhizal associations.     

Seasonal associations with novel climates for North American migratory bird populations

Determining the implications of global climate change for highly mobile taxa such as migratory birds requires a perspective that is spatiotemporally comprehensive and ecologically relevant. Here, we document how passerine bird species that migrate within the Western Hemisphere (n = 77) are associated with projected novel climates across the full annual cycle. Following expectations, highly novel climates occurred on tropical non‐breeding grounds and the least novel climates occurred on temperate breeding grounds. Contrary to expectations, highly novel climates also occurred within temperate regions during the transition from breeding to autumn migration. This outcome was caused by lower inter‐annual climatic variability occurring in combination with stronger warming projections. Thus, migrants are projected to encounter novel climates across the majority of their annual cycle, with a pronounced peak occurring when juveniles are leaving the nest and preparing to embark on their first migratory journey, which may adversely affect their chances of survival.