Computer-aided detection of pulmonary nodules using dynamic self-adaptive template matching and a FLDA classifier

Improving the performance of computer-aided detection (CAD) system for pulmonary nodules is still an important issue for its future clinical applications. This study aims to develop a new CAD scheme for pulmonary nodule detection based on dynamic self-adaptive template matching and Fisher linear discriminant analysis (FLDA) classifier. We first segment and repair lung volume by using OTSU algorithm and three-dimensional (3D) region growing. Next, the suspicious regions of interest (ROIs) are extracted and filtered by applying 3D dot filtering and thresholding method. Then, pulmonary nodule candidates are roughly detected with 3D dynamic self-adaptive template matching. Finally, we optimally select 11 image features and apply FLDA classifier to reduce false positive detections. The performance of the new method is validated by comparing with other methods through experiments using two groups of public datasets from Lung Image Database Consortium (LIDC) and ANODE09. By a 10-fold cross-validation experiment, the new CAD scheme finally has achieved a sensitivity of 90.24% and a false-positive (FP) of 4.54 FP/scan on average for the former dataset, and a sensitivity of 84.1% with 5.59 FP/scan for the latter. By comparing with other previously reported CAD schemes tested on the same datasets, the study proves that this new scheme can yield higher and more robust results in detecting pulmonary nodules.     

Flux theory for Poisson distributed pores with Gaussian permeability

The mean of the solute flux through membrane pores depends on the random distribution and permeability of the pores. Mathematical models including such randomness factors make it possible to obtain statistical parameters for pore characterization. Here, assuming that pores follow a Poisson distribution in the lipid phase and that their permeabilities follow a Gaussian distribution, a mathematical model for solute dynamics is obtained by applying a general result from a previous work regarding any number of different kinds of randomly distributed pores.

The new proposed theory is studied using experimental parameters obtained elsewhere, and a method for finding the mean single pore flux rate from liposome flux assays is suggested. This method is useful for pores without requiring studies by patch-clamp in single cells or single-channel recordings. However, it does not apply in the case of ion-selective channels, in which a more complex flux law combining the concentration and electrical gradient is required.     

Studies on the metabolic effects of methylthioformycin

1. 5′-Methylthioformycin, a structural analog of 5′-methylthioadenosine in which the N-C glycosidic bond is substituted by a C-C bond, has been synthesized by a newly developed procedure. 2. Membrane permeability of the molecule has been compared to that of methylthioadenosine in intact human erythrocytes and Friend erythroleukemia cells. The formycinyl compound is taken up with a rate significantly lower than that of 5′-methylthioadenosine and is not metabolized by the cells. 3. 5′-Methylthioformycin inhibits Friend erythroleukemia cells' growth: the effect is dose-dependent, fully reversible and not caused by cytotoxicity. 4. Several enzymes related to methylthioadenosine metabolism are inhibited by methylthioformycin. Rat liver methylthioadenosine phosphorylase is competitively inhibited with a K_i value of 2 μM. Among the propylamine transferases tested only rat brain spermine synthase is significantly inhibited, while rat brain spermidine synthase is less sensitive. Rat liver S-adenosylhomocysteine hydrolase is irreversibly inactivated with 50% inhibition at 400 μM methylthioformycin. 5′-Methylthioformycin does not exert any significant effect on protein carboxyl-O-methyltransferase. Inferences about the mechanism of the antiproliferative effect of the drug have been drawn from the above results.     

Structure and permeability of the fungal sheath in thePisonia mycorrhiza

Summary The tracer Cellufluor has been used to test the apoplastic permeability of the fungal sheath inPisonia grandis R. Br. mycorrhizas. In the tip region in the immediate vicinity of the root cap, where the sheath is not yet fully differentiated, Celluflor penetrates as far as the root epidermal cells. Behind this (i.e. just proximal to it) in differentiated regions, where the ultrastructure of both the root and fungal cells indicates that the mycorrhiza is likely to be functionally active, the sheath is impermeable to Cellufluor. During the development and differentiation of the sheath, the interhyphal spaces become filled with extracellular material. In the outer and middle regions this becomes electron opaque after fixation and staining. It is proposed that the dramatic decrease in apoplastic permeability over a short distance back from the root apex as the fungal sheath differentiates results from secretion of extracellular material by the fungus and its modification by deposition of phenolic substances. The symplastic pathway within the fungus may be very important for radial transfer of materials across the sheath. Blockage of the sheath apoplast could provide a sealed apoplastic compartment at the fungus-root interface, with resulting increase in efficiency of transfer between partners. The implications of these observations are discussed in relation to radial transfer across the sheath and transfer between partners in sheathing mycorrhizas in general.     

Anti-dermatophytic activity of bakuchiol: In vitro mechanistic studies and in vivo tinea pedis-inhibiting activity in a guinea pig model

Bakuchiol was an active antifungal compound isolated from Psoraleae Fructus by means of bioassay-guided fractionation in our previous study. The present work aimed to investigate the underlying mechanisms and the therapeutic effect of bakuchiol in Trichophyton mentagrophytes-induced tinea pedis. After exposure to bakuchiol at 0.25-fold, 0.5-fold and 1-fold of minimum inhibitory concentration (MIC) (3.91 μg/ml) for 24 h, the fungal conidia of T. mentagrophytes demonstrated a significant dose-dependent increase in membrane permeability. Moreover, bakuchiol at 1-fold MIC elicited a 187% elevation in reactive oxygen species (ROS) level in fungal cells after a 3-h incubation. However, bakuchiol did not induce DNA fragmentation. In a guinea pig model of tinea pedis, bakuchiol at 1%, 5% or 10% (w/w) concentration in aqueous cream could significantly reduce the fungal burden of infected feet (p < 0.01–0.05). In conclusion, this is the first report to demonstrate that bakuchiol is effective in relieving tinea pedis and in inhibiting the growth of the dermatophyte T. mentagrophytes by increasing fungal membrane permeability and ROS generation, but not via induction of DNA fragmentation.