滇龙胆草野生资源的地理分布与生物气候特征

利用国家标本资源共享平台提供的物种分布数据,结合野外实地调查和MaxEnt模型对滇龙胆草适宜分布区进行模拟和验证,分析滇龙胆草地理分布与气候因子间的关系.结果表明:模型训练集和验证集曲线下面积(area under curve,AUC)值均>0.90,表明模型预测精度高,预测结果较准确.滇龙胆草分布区地理坐标范围:22.2°-28.75°N,98.48°-110.59°E.适宜的海拔范围为1830^1959 m.适生区总面积约63.92×10^4 km^2;其中,高度适生区4.33×10^4 km^2,中度适生区21.42×10^4 km^2.云南、四川、贵州3省适生区面积合计约59.10×10^4 km^2,占全国适生区面积的92.46%.影响滇龙胆草地理分布的主要气候因子有3、6和8月太阳辐射,温度年较差,最暖季均温,10月和11月平均降水量及最干季降水量.偏最小二乘回归(partial least squares regression,PLSR)分析表明,分布区以北和以东的太阳辐射(3月、6月和8月)、温度年较差、10-11月平均降水量、最干季降水量是主要的限制因子;分布区以南主要限制因子是6月太阳辐射、最暖季均温、10月和11月平均降水量.限制滇龙胆草向四川盆地、广西盆地分布的主要气候因子是太阳辐射、温度年较差、最暖季均温、年生物温度和年可能蒸散量.综合分析认为,滇龙胆草的适生区主要位于云贵高原,上述地区的亚热带湿润气候最适宜滇龙胆草生长.     

How to survive a glaciation: the challenge of estimating biologically realistic potential distributions under freezing conditions

Correlative ecological niche models are increasingly used to estimate potential distributions during the Last Glacial Maximum (LGM) for biogeographical research. In the case of presence‐background/pseudoabsences techniques, cold environments that are poorly represented in existing geography can complicate the process of model calibration and transfer into more extreme cold environments that were very common during the LGM (non‐analog conditions). This may lead to biologically unrealistic estimations. Using one cold‐adapted North American mammal, we explore a real scenario to better understand the effect of restricting the range of environmental conditions over which niche models are calibrated and then transferred to LGM conditions. We performed two sets of experiments in Maxent: 1) we calibrated models in the context of only present‐day climate conditions, which is the most common practice, and compared predictions under LGM conditions based on two extrapolation methods (clamping versus unconstrained); 2) we calibrated single models using both present‐day and LGM conditions as part of the same background in order to include more extreme environments in the model calibration. Our experiments led to dramatically different estimates of species’ potential distributions, showing notable differences with respect to latitudinal and elevational shifts during the LGM. Models calibrated using present‐day climates yielded biologically unrealistic estimations, suggesting that species survived in the glaciers during the LGM. Even more unrealistic estimations were achieved when clamping was enforced as the method to extrapolate. Models calibrated in the context of both modern and past climates reduced the required degree of extrapolation and allowed more realistic potential distributions, suggesting that the species avoided extremely cold conditions during the LGM. This study alerts to the possibility of obtaining implausible potential distributions during the LGM due to restricted background datasets and offers recommendations that should promote better strategies to estimate distributional changes during glaciations.     

A macroecological approach to evolutionary rescue and adaptation to climate change

Despite the widespread use of ecological niche models (ENMs) for predicting the responses of species to climate change, these models do not explicitly incorporate any population‐level mechanism. On the other hand, mechanistic models adding population processes (e.g. biotic interactions, dispersal and adaptive potential to abiotic conditions) are much more complex and difficult to parameterize, especially if the goal is to predict range shifts for many species simultaneously. In particular, the adaptive potential (based on genetic adaptations, phenotypic plasticity and behavioral adjustments for physiological responses) of local populations has been a less studied mechanism affecting species’ responses to climatic change so far. Here, we discuss and apply an alternative macroecological framework to evaluate the potential role of evolutionary rescue under climate change based on ENMs. We begin by reviewing eco‐evolutionary models that evaluate the maximum sustainable evolutionary rate under a scenario of environmental change, showing how they can be used to understand the impact of temperature change on a Neotropical anuran species, the Schneider's toad Rhinella diptycha. Then we show how to evaluate spatial patterns of species’ geographic range shift using such models, by estimating evolutionary rates at the trailing edge of species distribution estimated by ENMs and by recalculating the relative amount of total range loss under climate change. We show how different models can reduce the expected range loss predicted for the studied species by potential ecophysiological adaptations in some regions of the trailing edge predicted by ENMs. For general applications, we believe that parameters for large numbers of species and populations can be obtained from macroecological generalizations (e.g. allometric equations and ecogeographical rules), so our framework coupling ENMs with eco‐evolutionary models can be applied to achieve a more accurate picture of potential impacts from climate change and other threats to biodiversity.     

Do genetic structure and landscape heterogeneity impact color morph frequency in a polymorphic salamander?

Landscape heterogeneity plays an important role in population structure and divergence, particularly for species with limited vagility. Here, we used a landscape genetic approach to identify how landscape and environmental variables affect genetic structure and color morph frequency in a polymorphic salamander. The eastern red‐backed salamander, Plethodon cinereus, is widely distributed in northeastern North America and contains two common color morphs, striped and unstriped, that are divergent in ecology, behavior, and physiology. To quantify population structure, rates of gene flow, and genetic drift, we amplified 10 microsatellite loci from 648 individuals across 28 sampling localities. This study was conducted in northern Ohio, where populations of P. cinereus exhibit an unusually wide range of morph frequency variation. To test whether genetic distance was more correlated with morph frequency, elevation, canopy cover, waterways, ecological niche or geographic distance, we used resistance distance and least cost path analyses. We then examined whether landscape and environmental variables, genetic distance or geographic distance were correlated with variation in morph frequency. Tests for population structure revealed three genetic clusters across our sampling range, with one cluster monomorphic for the striped morph. Rates of gene flow and genetic drift were low to moderate across sites. Genetic distance was most correlated with ecological niche, elevation and a combination of landscape and environmental variables. In contrast, morph frequency variation was correlated with waterways and geographic distance. Thus, our results suggest that selection is also an important evolutionary force across our sites, and a balance between gene flow, genetic drift and selection interact to maintain the two color morphs.     

Questioning assumptions of trophic behavior in a broadly ranging marine predator guild

We evaluated whether existing assumptions regarding the trophic ecology of a poorly‐studied predator guild, northwest (NW) Atlantic skates (family: Rajidae), were supported across broad geographic scales. Four hypotheses were tested using carbon (δ¹³C) and nitrogen (δ¹⁵N) stable isotope values as a proxy for foraging behavior: 1) species exhibit ontogenetic shifts in habitat and thus display a shift in ¹³C with differential use of the continental shelf; 2) species exhibit ontogenetic prey shifts (i.e. from smaller to larger prey items) and become enriched in ¹⁵N; 3) individuals acquire energy from spatially confined local resource pools and exhibit limited displacement; and 4) species exhibit similarly sized and highly overlapping trophic niches. We found some evidence for ontogenetic shifts in habitat‐use (δ¹³C) for thorny and little skate and diet (δ¹⁵N) of thorny and winter skate and hypothesize that individuals exhibit gradual trophic niche transition, especially in δ¹⁵N space, rather than a clear and distinct shift in diet throughout ontogeny. Spatial isoscapes generated for little, thorny, and winter skate highlighted distinct spatial patterns in isotopic composition across the coastal shelf. For little and thorny skate, patterns mimicked expected spatial variability in the isotopic composition of phytoplankton/POM, suggesting limited displacement and utilization of spatially confined resource pools. Winter skate, however, exhibited a much narrower range of δ¹³C and δ¹⁵N values, suggesting individuals may use resources from a more confined latitudinal range. Although high total trophic niche overlap was observed between some species (e.g. little and thorny skate), sympatric species (e.g. little and winter skate) exhibited a degree of trophic niche separation. These findings offer new insight into the trophic dynamics of a poorly‐studied, vulnerable group of predators, and highlight a need to re‐examine assumptions pertaining to aspects of their ecology.     

Dietary partitioning promotes the coexistence of planktivorous species on coral reefs

Theories involving niche diversification to explain high levels of tropical diversity propose that species are more likely to co‐occur if they partition at least one dimension of their ecological niche space. Yet, numerous species appear to have widely overlapping niches based upon broad categorizations of resource use or functional traits. In particular, the extent to which food partitioning contributes to species coexistence in hyperdiverse tropical ecosystems remains unresolved. Here, we use a molecular approach to investigate inter‐ and intraspecific dietary partitioning between two species of damselfish (Dascyllus flavicaudus, Chromis viridis) that commonly co‐occur in branching corals. Species‐level identification of their diverse zooplankton prey revealed significant differences in diet composition between species despite their seemingly similar feeding strategies. Dascyllus exhibited a more diverse diet than Chromis, whereas Chromis tended to select larger prey items. A large calanoid copepod, Labidocera sp., found in low density and higher in the water column during the day, explained more than 19% of the variation in dietary composition between Dascyllus and Chromis. Dascyllus did not significantly shift its diet in the presence of Chromis, which suggests intrinsic differences in feeding behaviour. Finally, prey composition significantly shifted during the ontogeny of both fish species. Our findings show that levels of dietary specialization among coral reef associated species have likely been underestimated, and they underscore the importance of characterizing trophic webs in tropical ecosystems at higher levels of taxonomic resolution. They also suggest that niche redundancy may not be as common as previously thought.     

Elucidating the functional evolution of heat sensors among Xenopus species adapted to different thermal niches by ancestral sequence reconstruction

Ambient temperature fluctuations are detected via the thermosensory system which allows animals to seek preferable thermal conditions or escape from harmful temperatures. Evolutionary changes in thermal perception have thus potentially played crucial roles in niche selection. The genus Xenopus (clawed frog) is suitable for investigating the relationship between thermal perception and niche selection due to their diverse latitudinal and altitudinal distributions. Here we performed comparative analyses of the neuronal heat sensors TRPV1 and TRPA1 among closely related Xenopus species (X. borealis, X. muelleri, X. laevis, and X. tropicalis) to elucidate their functional evolution and to assess whether their functional differences correlate with thermal niche selection among the species. Comparison of TRPV1 among four extant Xenopus species and reconstruction of the ancestral TRPV1 revealed that TRPV1 responses to repeated heat stimulation were specifically altered in the lineage leading to X. tropicalis which inhabits warmer niches. Moreover, the thermal sensitivity of TRPA1 was lower in X. tropicalis than the other species, although the thermal sensitivity of TRPV1 and TRPA1 was not always lower in species that inhabit warmer niches than the species inhabit cooler niches. However, a clear correlation was found in species differences in TRPA1 activity. Heat‐evoked activity of TRPA1 in X. borealis and X. laevis, which are adapted to cooler niches, was significantly higher than in X. tropicalis and X. muelleri which are adapted to warmer niches. These findings suggest that the functional properties of heat sensors changed during Xenopus evolution, potentially altering the preferred temperature ranges among species.     

Body size determines soil community assembly in a tropical forest

Tropical forests shelter an unparalleled biological diversity. The relative influence of environmental selection (i.e., abiotic conditions, biotic interactions) and stochastic–distance‐dependent neutral processes (i.e., demography, dispersal) in shaping communities has been extensively studied for various organisms, but has rarely been explored across a large range of body sizes, in particular in soil environments. We built a detailed census of the whole soil biota in a 12‐ha tropical forest plot using soil DNA metabarcoding. We show that the distribution of 19 taxonomic groups (ranging from microbes to mesofauna) is primarily stochastic, suggesting that neutral processes are prominent drivers of the assembly of these communities at this scale. We also identify aluminium, topography and plant species identity as weak, yet significant drivers of soil richness and community composition of bacteria, protists and to a lesser extent fungi. Finally, we show that body size, which determines the scale at which an organism perceives its environment, predicted the community assembly across taxonomic groups, with soil mesofauna assemblages being more stochastic than microbial ones. These results suggest that the relative contribution of neutral processes and environmental selection to community assembly directly depends on body size. Body size is hence an important determinant of community assembly rules at the scale of the ecological community in tropical soils and should be accounted for in spatial models of tropical soil food webs.     

The niches of nuthatches affect their lineage evolution differently across latitude

Ecological niche evolution can promote or hinder the differentiation of taxa and determine their distribution. Niche‐mediated evolution may differ among climatic regimes, and thus, species that occur across a wide latitudinal range offer a chance to test these heterogeneous evolutionary processes. In this study, we examine (a) how many lineages have evolved across the continent‐wide range of the Eurasian nuthatch (Sitta europaea), (b) whether the lineages’ niches are significantly divergent or conserved and (c) how their niche evolution explains their geographic distribution. Phylogenetic reconstruction and ecological niche models (ENMs) showed that the Eurasian nuthatch contained six parapatric lineages that diverged within 2 Myr and did not share identical climatic niches. However, the niche discrepancy between these distinct lineages was relatively conserved compared with the environmental differences between their ranges and thus was unlikely to drive lineage divergence. The ENMs of southern lineages tended to cross‐predict with their neighbouring lineages whereas those of northern lineages generally matched with their abutting ranges. The coalescence‐based analyses revealed more stable populations for the southern lineages than the northern ones during the last glaciation cycle. In contrast to the overlapping ENMs, the smaller parapatric distribution suggests that the southern lineages might have experienced competitive exclusion to prevent them from becoming sympatric. On the other hand, the northern lineages have expanded their ranges and their current abutting distribution might have resulted from lineages adapting to different climatic conditions in allopatry. This study suggests that niche evolution may affect lineage distribution in different ways across latitude.     

Niche‐based relationship between sympatric bark living insect pests and tree vigor decline of Pinus yunnanensis

Forest stands of Pinus yunnanensis Franch in southwestern China are seriously damaged by several bark living insect pests. These pests commonly exist in the same host tree and exploit limited phloem resources. In this study, we hypothesized that sympatric pests would occupy different ecological niches to reduce interspecific competition, and their coordinated attack would aggravate the tree vigor decline of P. yunnanensis. To quantify the ecological niches, we used a sampling method involving three dimensional divisions of tree resource states: (a) sample plot dimension (to evaluate the extent of pest colonization at plot scale), (b) trunk height dimension, and (c) tree vigor dimension. Those attacked pine canopies and colonized trunks were analysed in the field study. The results showed that Tomicus minor and Tomicus yunnanensis both widely and uniformly distributed in lightly, moderately and heavily damaged canopies while they aggregated on particular trunks of dying and withered trees. Lower and middle trunk sections (1–4 m) were mainly occupied by Monochamus alternatus and T. minor, yet T. yunnanensis dominated the upper parts (5–6 m). There was an overlap of the pine shoot beetles in the middle sections (2–4 m), whereas all three species were ecologically segregated in other trunk sections. During the shoot feeding phase, tree vigor declined with pine shoot beetles' increasing shoot feeding density. They coexisted in the same host tree, while M. alternatus only attacked dying and withered tree trunks, causing a greater infestation. Colonization of pine shoot beetle then followed by M. alternatus could be the major causes of tree mortality. This study highlights the resource utilization pattern of sympatric bark living insect pests corresponding with tree vitality. Those findings would help to understand the mechanisms of pest outbreak in P. yunnanensis ecosystem and provide potential guidance for developing an early monitoring pest warning system.