Effects of management for productivity on adult survival of Snowy Plovers

Understanding the factors contributing to variation in demographic parameters and their influences on population growth is fundamental to effective conservation of small populations, but this information is often not available. Among shorebirds, population growth is generally most sensitive to changes in adult survival so understanding the factors affecting this vital rate is important. We used a long-term mark–resight dataset and Program MARK to examine the effect of management actions, initiated to improve nesting productivity, on adult survival in a threatened population of Snowy Plovers (Charadrius nivosus) in Oregon, USA. Apparent adult survival averaged 0.71 ± 0.01 (SE), but increased from 1990 to 2014. This increase coincided with a decline in use of protective nest exclosures, but initiation of lethal nest predator management. The unexpected apparent benefit to adult survival of removal of nest predators and the negative effect of protective nest exclosures highlight the importance of understanding how management practices at one life cycle stage may have unintended consequences at other life stages. Our 25-year analysis adds to our knowledge of an intensively managed, threatened species at the northern limit of its range, but, more importantly, knowledge of the negative effect of exclosure use and the positive effect of predator management on adult survival can help inform conservation of less well-studied species with similar life histories.     

Early‐life patterns of growth are linked to levels of phenotypic trait covariance and postfledging mortality across avian species

Life history studies have established that trade‐offs between growth and survival are common both within and among species. Identifying the factor(s) that mediate this trade‐off has proven difficult, however, especially at the among‐species level. In this study, we examined a series of potentially interrelated traits in a community of temperate‐zone passerine birds to help understand the putative causes and consequences of variation in early‐life growth among species. First, we examined whether nest predation risk (a proven driver of interspecific variation in growth and development rates) was correlated with species‐level patterns of incubation duration and nestling period length. We then assessed whether proxies for growth rate covaried with mean trait covariance strength (i.e., phenotypic correlations ( ^rp), which can be a marker of early‐life stress) among body mass, tarsus length, and wing length at fledging. Finally, we examined whether trait covariance strength at fledging was related to postfledging survival. We found that higher nest predation risk was correlated with faster skeletal growth and that our proxies for growth corresponded with increased trait covariance strength ( ^rp), which subsequently, correlated with higher mortality in the next life stage (postfledging period). These results provide an indication that extrinsic pressures (nest predation) impact rates of growth, and that there are costs of rapid growth across species, expressed as higher mean ^rp and elevated postfledging mortality. The link between higher levels of trait covariance at fledging and increased mortality is unclear, but increased trait covariance strength may reflect reduced phenotypic flexibility (i.e., phenotypic canalization), which may limit an organism''s capacity for coping with environmental or ecological variability.     

Climate change and nesting behaviour in vertebrates: a review of the ecological threats and potential for adaptive responses

Nest building is a taxonomically widespread and diverse trait that allows animals to alter local environments to create optimal conditions for offspring development. However, there is growing evidence that climate change is adversely affecting nest‐building in animals directly, for example via sea‐level rises that flood nests, reduced availability of building materials, and suboptimal sex allocation in species exhibiting temperature‐dependent sex determination. Climate change is also affecting nesting species indirectly, via range shifts into suboptimal nesting areas, reduced quality of nest‐building environments, and changes in interactions with nest predators and parasites. The ability of animals to adapt to sustained and rapid environmental change is crucial for the long‐term persistence of many species. Many animals are known to be capable of adjusting nesting behaviour adaptively across environmental gradients and in line with seasonal changes, and this existing plasticity potentially facilitates adaptation to anthropogenic climate change. However, whilst alterations in nesting phenology, site selection and design may facilitate short‐term adaptations, the ability of nest‐building animals to adapt over longer timescales is likely to be influenced by the heritable basis of such behaviour. We urgently need to understand how the behaviour and ecology of nest‐building in animals is affected by climate change, and particularly how altered patterns of nesting behaviour affect individual fitness and population persistence. We begin our review by summarising how predictable variation in environmental conditions influences nest‐building animals, before highlighting the ecological threats facing nest‐building animals experiencing anthropogenic climate change and examining the potential for changes in nest location and/or design to provide adaptive short‐ and long‐term responses to changing environmental conditions. We end by identifying areas that we believe warrant the most urgent attention for further research.     

Forest Restoration Treatment Effects on the Nesting Success of Western Bluebirds (Sialia mexicana)

We examined the effects of presettlement forest restoration treatments on the nesting success of Western Bluebirds in ponderosa pine forests of northwestern Arizona, U.S.A. From 1998 to 2001 we monitored 97 active Western Bluebird nests, 41 in current‐condition untreated forest and 56 in restoration‐treated forest. We found no effect of restoration treatments on clutch size and little effect on the number of nestlings per nest. However, in treated forest stands number of fledglings per nest averaged 1.6 times greater, and probability of a nest surviving to successfully fledge at least one young was up to 4.2 times greater than in untreated forest. Probability of a nest succeeding averaged 0.39 ± 0.11 (SE) and 0.75 ± 0.06 from 1999 to 2001 in untreated and treated forests, respectively. In addition, in treated forest, average number of nests infested with the blowfly parasite Protocalliphora sialia was up to 4.3 times greater, and number of parasites per fledgling was up to 10.7 times greater than in untreated forest. Overall, the data suggest that in treated forest Western Bluebirds have a higher probability of successfully fledging young, but they are at greater risk of parasitic infestations, of which the ultimate effects on post‐fledging survival are unknown.     

Factors Influencing Nesting Success of King Eiders on Northern Alaska's Coastal Plain

Abstract: King eider (Somateria spectabilis) populations have declined markedly in recent decades for unknown reasons. Nest survival is one component of recruitment, and a female's chance of reproductive success increases with her ability to choose an appropriate nesting strategy. We estimated variation in daily nest survival of king eiders at 2 sites, Teshekpuk and Kuparuk, Alaska, USA, 2002–2005. We evaluated both a priori and exploratory competing models of nest survival that considered importance of nest concealment, seclusion, and incubation constancy as strategies to avoid 2 primary egg predators, avian (Larus spp., Stercorarius spp., and Corvus corax) and fox (Alopex lagopus). We used generalized nonlinear techniques to examine factors affecting nest survival rates and information-theoretic approaches to select among competing models. Estimated nest survival, accounting for a nest visitation effect, varied considerably across sites and years (0.21–0.57); however, given our small sample size, much of this variation may be attributable to sampling variation (s̀²_process = 0.007, 95% CI: 0.003–0.070). Nest survival was higher at Kuparuk than Teshekpuk in all years; however, due to the correlative nature of our data, we cannot determine the underlying causes with any certainty. We found mixed support for the concealed breeding strategy; females derived no benefit from nesting in areas with more willow (Salix spp.; measure of concealment) except that the observer effect diminished as willow cover increased. We suggest these patterns are due to conflicting predation pressures. Nest survival was not higher on islands (measure of seclusion) or with increased incubation constancy but was higher post-fox removal, indicating that predator control on breeding grounds could be a viable management option. Nest survival was negatively affected by our nest visitations, most likely by exposing the nest to avian scavengers. We recommend precautions be taken to limit the effects of nest visits in future studies and to consider them as a possible negative bias in estimated nest survival. Future models of the impacts of development within the breeding grounds of king eider should consider the influence of humans in the vicinity of nests.     

西藏波密柑马蜂的筑巢习性（英文）

柑马蜂Polistes mandarinus在不同的环境中会利用植物材料制作各种不同的蜂巢。我们在2009年5-8月间观察研究了西藏自治区波密县的柑马蜂筑巢习性, 并收集62个蜂巢。柑马蜂利用植物纤维和树脂将它们的巢穴筑于当地居民的木屋檐下。收集的42个在用蜂巢中, 8月末平均拥有79.64±65.28个蜂房, 13.1±10.68个蜂蛹。20个弃用蜂巢中, 平均拥有12.95±3.99个蜂房。8月末, 成功的柑马蜂群拥有约80个个体。研究地的柑马蜂采取3种方式来筑巢, 但以第1种方式最为普遍。第1种筑巢方式筑造的蜂巢以两个蜂房连接巢柄, 结构最为稳定, 所以也应用最广, 后两种筑巢方式筑造的蜂巢均以一个蜂房连接巢柄, 是由于越冬雌蜂在找不到合适的筑巢材料时才采取的建巢方式。     

Rings and ribbons in protein structures: Characterization using helical parameters and Ramachandran plots for repeating dipeptides

Helical parameters displayed on a Ramachandran plot allow peptide structures with successive residues having identical main chain conformations to be studied. We investigate repeating dipeptide main chain conformations and present Ramachandran plots encompassing the range of possible structures. Repeating dipeptides fall into the categories: rings, ribbons, and helices. Partial rings occur in the form of “nests” and “catgrips”; many nests are bridged by an oxygen atom hydrogen bonding to the main chain NH groups of alternate residues, an interaction optimized by the ring structure of the nest. A novel recurring feature is identified that we name unpleated β, often situated at the ends of a β‐sheet strand. Some are partial rings causing the polypeptide to curve gently away from the sheet; some are straight. They lack β‐pleat and almost all incorporate a glycine. An example is the first glycine in the GxxxxGK motif of P‐loop proteins. Ribbons in repeating dipeptides can be either flat, as seen in repeated type II and type II′ β‐turns, or twisted, as in multiple type I and type I′ β‐turns. Hexa‐ and octa‐peptides in such twisted ribbons occur frequently in proteins, predominantly with type I β‐turns, and are the same as the “β‐bend ribbons” hitherto identified only in short peptides. One is seen in the GTPase‐activating protein for Rho in the active, but not the inactive, form of the enzyme. It forms a β‐bend ribbon, which incorporates the catalytic arginine, allowing its side chain guanidino group to approach the active site and enhance enzyme activity. Proteins 2014; 82:230–239. © 2013 Wiley Periodicals, Inc.     

Facultative polygyny in the plant-ant Petalomyrmex phylax (Hymenoptera: Formicinae): sociogenetic and ecological determinants of queen number

In polygynous ants it has been proposed that the coexistence of several queens in a colony evolved as a response to ecological, social and genetic parameters. We present demographic, histological and genetic data showing that the plant-ant Petalomyrmex phylax is facultatively and secondarily polygynous. Polygyny is functional, lowers the reproductive output per queen, and is a kin-selected trait as new queens accepted in polygynous colonies are highly related females that never left their natal colony. The degree of polygyny varies according to a geographical gradient. Northern colonies can be strongly polygynous, while at the southern edge of the species' distribution, colonies are almost exclusively monogynous. However, ecological studies of the host-plant populations revealed that this cline could not be explained by variations in the degree of nest site limitation. We discuss selective costs and benefits associated with these social structures, and propose that this cline may result from historical processes such as selection of a more dispersive strategy along a colonization front.  © 2005 The Linnean Society of London, Biological Journal of the Linnean Society , 2005, 86 , 133–151.     

“Wall-papering” and elaborate nest architecture in the ponerine antHarpegnathos saltator

Summary Excavation of 18 nests ofHarpegnathos saltator from southern India revealed an unusually complex architecture for a ponerine ant. The inhabited chambers are not deep in the ground. The uppermost chamber is protected by a thick vaulted roof, on the outside of which is an intervening space serving as isolation from the surrounding soil. In large colonies, the vaulted roof is extended into a shell which encloses several superimposed chambers. Little openings, which may be encircled by moulded flanges, occur in the upper region of the shell. The inside of the chambers is partly or completely lined with strips of empty cocoons. A refuse chamber is always found deeper than the inhabited chambers; live dipteran larvae (family Milichiidae) are typically present. These elaborate nests represent a large energetic investment, and we speculate therefore that nest emigration is unlikely in this species. Consequently, colony fission may never occur, unlike other ants where gamergates reproduce.     

Evaluating multiproduct chromatography Protein A resin reuse for monoclonal antibodies in biopharmaceutical manufacturing

In good manufacturing practice (GMP) facilities in the biopharmaceutical industry, chromatography resins are largely underutilized during purification of single drug products during clinical production. Chromatography resins are dedicated to a specific product and disposed of, after only a fraction of their lifetime due to concerns of potential product carryover from one program to another. In this study, we follow a resin lifetime methodology typically used for commercial submissions and apply it to determine the feasibility of purifying different products on a Protein A MabSelect PrismA™ resin. Three distinct monoclonal antibodies were used as model molecules. Column performance was monitored through chromatogram profiles, yield, clearance capability of selected media components, pressure and product quality. A protein carryover study was designed to demonstrate that the column cleaning procedures reduced protein carryover to safe cleanliness levels regardless of multiple product contact cycles and the order in which the mAbs are captured. Data show that up to 90 total cycles (30 cycles per antibody), there was negligible protein carryover and impact on process performance. Product quality was consistent, with the only meaningful trends found for the leached Protein A ligand, without affecting the conclusion of the study. While the study was restricted to three antibodies, the proof of concept for resin reuse was demonstrated.