In vitro laser ablation of laboratory developed biofilms using an Nd:YAG laser of 532 nm wavelength

We studied the laser ablation of laboratory-developed biofilm on titanium and glass surfaces. Specifically, Pseudoalteromonas carrageenovora, a marine biofilm forming bacterium was used to generate laboratory biofilm. Two fluences, 0.05 and 0.1 J/cm(2) and three durations of irradiation, 30 s, 5 min, and 10 min were tested using an Nd;YAG laser of 532 nm wavelength (in the green light area). Nonirradiated coupons with biofilm served as control. The biofilm removal efficiency increased with the increase in laser fluence and duration of irradiation. The maximum biofilm area cover on control coupons of glass and titanium was 62.5 and 76.0%, respectively. Upon irradiation with fluence 0.1 J/cm(2) for the very short duration of 30 s, this reduced to 5.6 and 12.4% and at 10 min to 2.17 and 0.7% on glass and titanium coupons, respectively, while the controls did not show any reductions (62.5 and 76.0% respectively, for glass and titanium coupons). The biofilm TRC (Total Resuscitated Cells) reduction during this period was even more prominent than the area cover, indicating that the remaining biofilm portions on coupons after irradiation were largely composed of dead bacterial cells. The TRC in the irradiation chamber medium for short durations of irradiation showed a significant increase, indicating that the laser irradiation removed live bacteria from the biofilm. The re-growth of the resuscitated cells showed they could grow like the control cells but with a significant lag. The laser's efficiency in the removal of biofilm was better seen on titanium coupons than on glass. Our results showed that a low-power pulsed laser irradiation could be used to remove biofilm formed on hard surfaces.     

Phase separation of cholesterol from phosphatidylserine-cholesterol mixtures in the presence of the local anesthetic tetracaine

Addition of the local anesthetic tetracaine (TTC) to multilamellar dispersions of natural phosphatidylserine (PS) causes changes in the thermotropic properties of the membrane, which can be detected by differential scanning calorimetry, and in the structure of the membrane as detected by X-ray diffraction. At molar ratio [PS]/[TTC]8.5, the melting temperature of the phospholipid shifts downwards by approximately 2.5 °C. The melting endotherm is broadened; however, there is little change in the enthalpy of melting. In ternary mixtures (PS–TTC–cholesterol), the thermotropic changes are enhanced. At [PS]/[TTC]13, the onset of phase separation of cholesterol crystals from PS in the liquid crystalline state occurs at molar fraction cholesterol (X_chol)0.28, marginally smaller than that found in the absence of the anesthetic.     

Contrasting genetic structure of adults and progeny in a Louisiana iris hybrid population

Studies of natural hybridization have suggested that it may be a creative stimulus for adaptive evolution and speciation. An important step in this process is the establishment of fit recombinant genotypes that are buffered from subsequent recombination with unlike genotypes. We used molecular markers and a two-generation sampling strategy to infer the extent of recombination in a Louisiana iris hybrid zone consisting predominantly of Iris fulva-type floral phenotypes. Genotypic diversity was fairly high, indicating that sexual reproduction is frequent relative to clonal reproduction. However, we observed strong spatial genetic structure even after controlling for clonality, which implies a low level of pollen and seed dispersal. We therefore used cluster analysis to explore the hypothesis that the fulva-type hybrids are an admixture of groups between which there has been limited recombination. Our results indicate that several such groups are present in the population and are strongly localized spatially. This spatial pattern is not attributable strictly to a lack of mating opportunities between dissimilar genotypes for two reasons: (1) relatedness of flowering pairs was uncorrelated with the degree of overlap in flowering, and (2) paternity analysis shows that pollen movement among the outcross fraction occurred over large distances, with roughly half of all paternity attributed to pollen flow from outside the population. We also found evidence of strong inbreeding depression, indicated by contrasting estimates of the rate of self-fertilization and the average inbreeding coefficient of fulva-type hybrids. We conclude that groups of similar hybrid genotypes can be buffered from recombination at small spatial scales relative to pollen flow, and selection against certain recombinant genotypes may be as important as or more important than clonal reproduction and inbreeding.     

Speciation and ecology revisited: phylogenetic niche conservatism and the origin of species

Evolutionary biologists have often suggested that ecology is important in speciation, in that natural selection may drive adaptive divergence between lineages that inhabit different environments. I suggest that it is the tendency of lineages to maintain their ancestral ecological niche (phylogenetic niche conservatism) and their failure to adapt to new environments which frequently isolates incipient species and begins the process of speciation. Niche conservatism may be an important and widespread component of allopatric speciation but is largely unstudied. The perspective outlined here suggests roles for key microevolutionary processes (i.e., natural selection, adaptation) that are strikingly different from those proposed in previous literature on ecology and speciation. Yet, this perspective is complementary to the traditional view because it focuses on a different temporal stage of the speciation process.     

Resistance and Resilience of Macroinvertebrate Assemblages to Drying and Flood in a Tallgrass Prairie Stream System

Intermittent streams are common worldwide, and the ability of invertebrates to recover from floods and drought is a key feature of communities from these highly disturbed ecosystems. The macroinvertebrate assemblages of Kings Creek in northeastern Kansas were sampled regularly from four intermittent and two perennial sites over 2 years (1995–1996) to investigate the response and recovery to seasonal drying and floods. A 9mo drying period reduced taxa richness and density to 14% and 3% of pre-drying assemblages, respectively, in 1995–1996, whereas a 2mo drying period reduced richness by half and density to 4% of pre-drying assemblages in 1996. Floods at intermittent sites reduced densities and richness by 95% and 50%, respectively. A >50 y-flood reduced macroinvertebrate richness by 97% and density by >99% at a downstream perennial site. Resistance and resilience of total macroinvertebrate density was typically greater to floods than to drying, whereas resilience of taxa richness did not differ between disturbance types. The time required for recovery to pre-flood conditions (richness and density) was half as long (27 vs. 76 day) for intermittent sites compared to perennial sites. Colonization of intermittent sites was a function of distance from upstream refugia. Floods were a more important disturbance on assemblages in a downstream reach as compared to upstream reaches. In contrast, upstream reaches were more likely to dry. Recovery following flood and drought was dominated by colonization as opposed to tolerance, thus resilience is more important than resistance in regulating macroinvertebrate communities in these streams, and relative position in the landscape affects disturbance type, intensity, and ability of communities to recover from disturbance.     

The Ibis: Transformations in a Twentieth Century British Natural History Journal

The contents of the British Ornithologists' Union's journal, The Ibis, during the first half of the 20th century illustrates some of the transformations that have taken place in the naturalist tradition. Although later generations of ornithologists described these changes as logical and progressive, their historical narratives had more to do with legitimizing the infiltration of the priorities of evolutionary theory, ecology, and ethology than analyzing the legacy of the naturalist tradition on its own terms. Despite ornithologists' claim that the journal's increasing focus on "biology" represented a natural development after the preliminary phase of systematics and geographical ornithology, in fact a small group campaigned to bring the priorities of population ecology, behavior, and selection theory into the journal and British ornithology more generally. The problems involved in this transition highlight the importance of methodological and institutional context in determining and reinforcing appropriate research programs for ornithologists. Comparing the discipline-building rhetoric of moderns with the contents of the past illustrates how modern evaluations of 19th century research programs have been enmeshed in ornithologists' endeavors to forge new identities for traditional disciplines.     

Urban and rural differences in mortality and causes of death in historical Poland

The purpose of this paper is to document and interpret urban-rural differences in mortality in the past. To this end, we used data on mortality in Wielkopolska, Poland, in the 19th century and at the beginning of the 20th century. The data on mortality in rural areas (N = 1,173,910 deceased), small towns (N = 573,903 deceased), and Poznań, the capital of the Wielkopolska region (N = 86,352 deceased), were gathered from original Prussian statistical yearbooks (Preussische Statistik). Causes of death were also analyzed (rural areas, N = 449,576 deceased; small towns, N = 238,365 deceased; Poznań, N = 61,512 deceased). Mortality measures such as crude death rate (CDR), infant death rate (IDR), and neonatal and postneonatal death rates were calculated. Life tables were constructed for both stationary and stable population models and measures of the opportunity for natural selection calculated (Crow's index I(m), potential gross reproduction rate R(pot), and biological state index I(bs)). Relative frequencies of leading causes of death were computed. Stratification depending on the place of residence was evident in all mortality measures as well as in the values of the life tables and the measures of the opportunity for natural selection, but it was reverse of what is observed today in developed countries. In Poznań (a large industrial city), the mortality situation was the least favorable. It was caused by large population density, lack of water supply and sewage systems (up to 1896), and bad working conditions. The values of CDR ranged between 26.89-31.46, and IDR between 190.6-280.5. Newborn life expectancy (for a stable population model) was 31.6 years, I(m) = 0.79, R(pot) = 0.85, and I(bs) = 0.47. The most common causes of death were tuberculosis, other diseases of the respiratory and circulatory systems, dysentery and diarrhea, and cancer. These diseases were less common in rural areas, so they had the most favorable values of mortality measures (CDR between 22.87-27.32, IDR between 181.8-219.4, life expectancy of newborn e(0) = 42.12, I(m) = 0.55, R(pot) = 0.93, I(bs) = 0.60). Infectious diseases (other than tuberculosis), frailty at birth, and frailty in old age were the most frequent causes of death in rural areas. Small towns (population <20,000) had a mortality intermediate between city and rural areas.     

Effects of high-relief structures on cold temperate fish assemblages: A field experiment

High-relief structures may influence the abundance and diversity of reef-associated fish. We conducted a field experiment to investigate whether the presence of vertical structures (PVC pipes) affects fish communities on artificial reefs. The effect of the height of the structures (1 and 3 m) was also tested. Furthermore, the effects on fish of placing artificial reefs on otherwise featureless bottoms were quantified. Algal and macro-invertebrate colonization of the reefs was also recorded. The experiment was carried out on the west coast of Sweden over a period of 1 year. The vertical structures had a positive effect on fish abundance but not on diversity. The height of the structures did not, however, influence the fish communities. Natural as well as urban vertical structures on the seafloor could have a positive effect on local fish abundance. The positive effects of artificial reefs on total fish abundance and diversity were immediate. Of the 10 species recorded, two, the black goby Gobius niger and the goldsinny wrasse Ctenolabrus rupestris, dominated over the whole survey period. There were significant temporal differences in fish abundance, and diversity increased with time.     

Occurrence of adventitious sprouting in short-lived monocarpic herbs: a field study of 22 weedy species

Background and Aims

Adventitious sprouting from the hypocotyle and roots in monocarpic herbs has been confirmed in previous experimental studies as a means to avoid bud limitation after severe injury in annual and biennial plants. Data regarding the role of adventitious sprouting in natural populations, however, were lacking. The aim of the present study was to assess whether adventitious sprouting occurs in natural populations and how it is affected by plant size, plant injury, plant cover and environmental characteristics.

Methods

Data were sampled from 14 037 individual plants from 389 populations belonging to 22 annual and biennial species. Growth parameters were measured in individual plants, species composition and plant cover in communities were evaluated, and environmental characteristics were estimated using Ellenberg indicator values.

Key Results

It was confirmed that adventitious sprouting occurs in natural populations of all but five species examined. Adventitious sprouting was positively affected by plant size and plant injury. Environmental factors including availability of soil nitrogen were not shown to affect adventitious sprouting. Annual and biennial plants did not differ in sprouting, but upright annuals had a lower number of and longer adventitious shoots than prostrate annuals.

Conclusions

Adventitious bud formation is used to overcome meristem limitation when stem parts are lost due to injury, and thus resprouting in short-lived monocarps should not be overlooked.     

Marine genetic swamping: hybrids replace an obligately estuarine fish

Populations of obligately estuarine taxa are potentially small and isolated and may lack genetic variation and display regional differentiation as a result of drift and inbreeding. Hybridization with a wide‐ranging marine congener should introduce genetic variation and reduce the effects of inbreeding depression and genetic drift. However, high levels of hybridization can cause demographic and genetic swamping. In southeastern Australia hybridization occurs between obligately estuarine Black bream (Acanthopagrus butcheri) and migratory marine Yellowfin bream (Acanthopagrus australis). Here, we surveyed genetic variation at eight microsatellite loci and the mitochondrial control region of juvenile fish from five coastal lagoons (including temporal replication in two lagoons) (total n = 970) to determine the frequency and persistence of hybridization, and its likely consequence for the estuarine restricted A. butcheri. Of 688 juvenile fish genotyped 95% were either A. australis (347) or hybrids (309); only 5% (32) were A. butcheri. Most hybrids were later generation hybrids or A. butcheri backcrosses, which are likely multi‐generational residents within lagoons. Far greater proportions of hybrid juveniles were found within two lagoons that are generally closed to the ocean (>90% hybrid fish within generally closed lagoons vs. 12–27% in permanently or intermittently open lagoons). In both lagoons, this was consistent across multiple cohorts of fish [79–97% hybrid fish (n = 282)]. Hybridization and introgression represent a major threat to the persistence of A. butcheri and have yet to be investigated for large numbers of estuarine taxa.