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31.
Alisa P. Ramakrishnan Craig E. Coleman Susan E. Meyer Daniel J. Fairbanks 《Molecular ecology resources》2002,2(1):22-23
Bromus tectorum (cheatgrass) is a flourishing invasive weed in the western United States. The objective of our study is to characterize its genetic diversity. We made a B. tectorum genomic library in lambda phage and screened approximately 4000 clones for poly CA and poly CT dinucleotide repeats. Of 38 sequences with dinucleotide repeats isolated from the library, we designed primer sets for 18 loci. A preliminary screen of 40 individuals from four populations indicated that seven loci were polymorphic. These loci will be valuable for elucidation of cheatgrass genetic diversity and population structure. 相似文献
32.
Karthick Marimuthu Kamalakannan Ayyanar Malathi Varagur Ganesan Paranidharan Vaikuntavasan Sivakumar Uthandi Kavino Mathiyazhagan Gowrisri Nagaraj 《Journal of Phytopathology》2020,168(3):144-155
Grapes downy mildew caused by obligate oomycete plant pathogen Plasmopara viticola is a devastating disease worldwide, resulting in significant yield and quality losses. A field survey was conducted in two major grapes cultivated areas of Tamil Nadu for the incidence of grapevine downy mildew. The disease incidence was 43.42%–76.69%, and the highest disease incidence of 76.69% was observed in the Theni district. Totally eight P. viticola isolates were collected from different places in Coimbatore and Theni districts. These isolates were confirmed through microscopic observation and sequencing of COX 2 gene, and the phylogenetic tree was developed to study their phylogenetic relationship among the isolates which shows 97–100% sequence similarity with other P. viticola isolates and less sequence similarity with Plasmopara species. The loop-mediated isothermal amplification (LAMP) assay was developed based on the CesA4 gene sequence of P. viticola. The assay developed was more sensitive as it detected P. viticola genomic DNA up to 20 fmg. LAMP assay specificity was proved by carrying out the assay with genomic DNA extracted from other Oomycetes and fungal plant pathogens. Finally, LAMP assay was validated by testing seventy-eight grapevine leaf samples collected from seven different locations. LAMP assay showed a positive reaction in sixty-two samples tested out of seventy-eight samples tested. Therefore, the LAMP assay described should helpful for early and specific detection of downy mildew pathogen and help in mitigating disease incidence. 相似文献
33.
34.
Lindsey Nielsen Dawn Meehan-Meola Annelisa Kilbourn Acacia Alcivar-Warren 《Conservation Genetics》2008,9(1):239-242
As the population sizes of the black and white rhinoceroses continues to decline, more efforts are needed in multiple areas
to help with the conservation efforts. One area being explored is the use of genetic diversity information to aid conservation
decisions. In this study, we designed 21 microsatellite primers for white and black rhinoceroses, 16 and 17 of which amplified
bands in the white and black rhinoceros, respectively. Out of these primers all 16 were polymorphic in the white rhinoceros
and 12 of the 17 were polymorphic in the black rhinoceros. The mean number of alleles was 3.31 and 2.12, the expected heterozygosities
were 0.420 and 0.372, and the observed heterozygosities were 0.436 and 0.322 for the white and black rhinoceroses, respectively.
Seven of the primers produced different allele sizes and variations that distinguished between black and white rhinoceroses.
Further genetic analyses with larger wild population sample sizes and markers are recommended to obtain a better understanding
of the genetic structure of the black and white rhinoceros populations in order to be useful in the conservation efforts of
these critically endangered species.
A. Kilbourn—In memoriam. 相似文献
35.
Despite long-term study, the mechanism explaining the parapatric distribution of two Australian reptile tick species is not understood. We describe the development of primers amplifying 10 microsatellite Bothriocroton hydrosauri loci, for the study of population structure and dispersal patterns of this tick. The numbers of alleles per locus ranged from two to seven in ticks from the study site, and the observed heterozygosity between 0.28 and 0.69. Pedigree analysis indicates that one locus is inherited in a non-Mendelian manner in three families, which was not explained by null allele presence. 相似文献
36.
生物素肼化学标记和DIG标记cDNA探针检测柑桔裂皮病类病毒 总被引:6,自引:0,他引:6
分别用生物素肼化学标记和DIG标记我国柑桔裂皮病类病毒(CEVd)全长克隆cDNA,用以上探讨对不同来源的的核酸样品进行斑点杂交。两种探针可检出病柑桔总核酸的最低含量久为400ng/斑点和80ng/斑点;生物素肼标记CEVd-DNA探讨针,可检出CEVd-cDNA的最低含量约为10pg/斑点,研制的CEVd检测试剂盒能检测出发病和隐性带毒苗木中的CEVd,灵敏、特异、简便、快速。试剂盒已使用于检测 相似文献
37.
The availability of large amounts of genomic DNA is of critical importance for many of the molecular biology assays used in the analysis of human disease. However, since the amount of patient tissue available is often limited and as particular foci of interest may consist of only a few hundred cells, the yield of DNA is often insufficient for extensive analysis. To address this problem, several whole genome amplification (WGA) methodologies have been developed. Initial WGA approaches were based on the polymerase chain reaction (PCR). However, recent reports have described the use of non-PCR-based linear amplification protocols for WGA. Using these methods, it is possible to generate microgram quantities of DNA starting with as little as 1mg of genomic DNA. This review will provide an overview of WGA approaches and summarize some of the uses for amplified DNA in various high-throughput genetic applications. 相似文献
38.
小麦HMW-GS1Dx5基因的克隆及其特异性表达 总被引:3,自引:0,他引:3
显微切割了普通小麦钢82-122(Triticumaestivum2n=42)具有1Dx5+1Dy10亚基的1D染色体长臂端,利用PCR扩增得到了HMW-GS1Dx5亚基的5(端400bp序列片段.以此作为探针从基因的组织特异性和特定发育阶段的表达两个方面研究了HMW-GS1Dx5基因表达的规律.结果表明,干种子及萌发种子中存在此基因,而在发育的幼苗中此基因未表达.HMW-GS1Dx5基因可能从开花初期开始表达.HMW-GS1Dx5基因在籽粒成熟期表达,然而在营养器官如叶片中未表达,其表达存在组织特异性.HMW-GS1Dx5基因在蜡熟期籽粒表达水平最高,其次是乳熟期籽粒.从开花15d至蜡熟期籽粒,表达趋于增加.开花15d其mRNA水平是蜡熟期籽粒mRNA的28%,灌浆期为40%、乳熟期为72%、完熟期为54%.这为进一步研究其表达调控和改善小麦品质打下基础 相似文献
39.
Adonis McQueen Lynn D. Blake Ala Azhari M. Trent Kemp Tommy W. McGaha Niranjan Namelikonda Randy W. Larsen Roman Manetsch Dennis E. Kyle 《Bioorganic & medicinal chemistry letters》2017,27(20):4597-4600
Primaquine (PQ) is the only commercially available drug that clears dormant liver stages of malaria and blocks transmission to mosquito vectors. Although an old drug, much remains to be known about the mechanism(s) of action. Herein we develop a fluorescent tagged PQ to discover cellular localization in the human malaria parasite, Plasmodium falciparum. Successful synthesis and characterization of a primaquine-coumarin fluorescent probe (PQCP) demonstrated potency equivalent to the parent drug and the probe was not cytotoxic to HepG2 carcinoma cells. Cellular localization was found primarily in the cytosol of the asexual erythrocytic and gametocyte stages of parasite development. 相似文献
40.