Construction of new stable strain over-expressing the glucose isomerase of the Streptomyces sp. SK strain

In order to over express the xylA gene of Streptomyces sp. SK strain, it was cloned under the control of the constitutive ermE-up promoter. This construct was integrated through site-specific recombination process into the chromosome of a Streptomyces violaceoniger glucose isomerase deficient strain using the non-replicative vector pTS55. The resulting CBS4 strain shows a perfect stability in the absence of selection pressure. Its glucose isomerase activity was about four and nine-fold greater, than that obtained from Streptomyces sp. SK, respectively fully induced or not by xylose.     

HSV—2阴道感染并诱导小鼠阴道粘膜上皮细胞凋亡

最近的报道指出,某些病毒有诱导体外细胞凋亡的作用,借以限制病毒的扩散。为探讨ＨＳＶ－２在体内诱导细胞凋亡的效果及其形态学特点,用 ＨＳＶ－２ ３３３株感染小鼠阴道,于感染后不同天数处死动物,取其阴道,固定于１０％中性福尔马林,ＴＵＮＥＬ末端标记染色显示凋亡的细胞,光镜下进行原位观察。结果显示：感染后的第１天粘膜上皮内即出现大量的凋亡细胞,第２天至１１天凋亡细胞的数量及在上皮内的分布范围达最高水平。早期的凋亡细胞见于感染后所有标本,其核染色质形态及分布似正常细胞,但它被ＴＵＮＥＬ标记染成棕黄色;晚期的凋亡细胞亦见于所有标本,其胞核缩小,染色质浓缩并在核周边集聚,核中心空化。载有凋亡细胞的上皮在阴道粘膜上分布很广,最广的可占全阴道上皮的２／３。同时可见ＨＳＶ．２引起的上皮细胞坏死及疱疹形成,二者均由凋亡细胞包围。凋亡细胞不断地由上皮表面脱落至阴道,未见凋亡小体及吞噬现象。结果提示,ＨＳＶ－２ ３３３株阴道感染可同时诱导细胞坏死及凋亡,细胞凋亡可能在限制病毒产生子代及限制感染区域扩展起重要作用。     

两种品系油菜植株成分与蚜虫种群消长及成蚜翅型的关系

本文研究两种品系油菜植株成分与桃蚜(Myzus persicae(Sulzer))、萝卜蚜(Lipaphis erysimi(Kaltenbach))的种群消长及成蚜翅型的关系.经分析得出如下结果:1.桃蚜种群消长与苏氨酸、赖氨酸、组氨酸、丙氨酸、硬脂酸等含量有关;桃蚜成蚜无翅率与精氨酸、谷氨酸、酪氨酸、异亮氨酸等含量有关.2.萝卜蚜种群消长与苏氨酸、蛋氨酸、异亮氨酸、苯丙氨酸、酪氨酸、含水量有关;萝卜蚜成蚜无翅率与含水量.亚麻酸.苏氨酸、油酸,天门冬氨酸、丝氯酸、亚油酸等含量有关.     

枣园节肢动物群落的时间动态

将枣园节肢动物群落视为一个整体,根据群落内物种的组成和数量,采用不同群落参数和群落分析法对太谷地区枣园节肢动物群落的时间格局进行了比较。结果表明,影响枣园节肢动物群落时间格局的主导因子及时间格局分化较为明显。可将枣园节肢动物群落在时序上分为发展期、过渡期、鼎盛期和衰减期4个阶段,并结合气候、物候变化,讨论了各阶段群落的发生特点和主要害虫的治理对策。     

高温对温室草莓光合生理特性的影响及胁迫等级构建

以草莓品种"红颜"为材料,采用人工控制试验对草莓苗进行动态高温(32℃/22℃,35 ℃/25℃,38 ℃/28 ℃和41℃/31℃;日最高温/日最低温)胁迫(2、5、8和11 d)处理,以28℃/18℃为对照(CK),测定各处理下草莓叶片的光合生理参数.通过主成分分析提取关键参数,并以此计算高温胁迫指数(Z),划分高...     

Quantitative Metaproteomics and Activity-based Protein Profiling of Patient Fecal Microbiome Identifies Host and Microbial Serine-type Endopeptidase Activity Associated With Ulcerative Colitis

The gut microbiota plays an important yet incompletely understood role in the induction and propagation of ulcerative colitis (UC). Organism-level efforts to identify UC-associated microbes have revealed the importance of community structure, but less is known about the molecular effectors of disease. We performed 16S rRNA gene sequencing in parallel with label-free data-dependent LC-MS/MS proteomics to characterize the stool microbiomes of healthy (n = 8) and UC (n = 10) patients. Comparisons of taxonomic composition between techniques revealed major differences in community structure partially attributable to the additional detection of host, fungal, viral, and food peptides by metaproteomics. Differential expression analysis of metaproteomic data identified 176 significantly enriched protein groups between healthy and UC patients. Gene ontology analysis revealed several enriched functions with serine-type endopeptidase activity overrepresented in UC patients. Using a biotinylated fluorophosphonate probe and streptavidin-based enrichment, we show that serine endopeptidases are active in patient fecal samples and that additional putative serine hydrolases are detectable by this approach compared with unenriched profiling. Finally, as metaproteomic databases expand, they are expected to asymptotically approach completeness. Using ComPIL and de novo peptide sequencing, we estimate the size of the probable peptide space unidentified (“dark peptidome”) by our large database approach to establish a rough benchmark for database sufficiency. Despite high variability inherent in patient samples, our analysis yielded a catalog of differentially enriched proteins between healthy and UC fecal proteomes. This catalog provides a clinically relevant jumping-off point for further molecular-level studies aimed at identifying the microbial underpinnings of UC.     

In-depth Profiling and Quantification of the Lysine Acetylome in Hepatocellular Carcinoma with a Trapped Ion Mobility Mass Spectrometer

Hepatocellular carcinoma (HCC) is the third most common cause of cancer-related death worldwide with limited therapeutic options. Comprehensive investigation of protein posttranslational modifications in HCC is still limited. Lysine acetylation is one of the most common types of posttranslational modification involved in many cellular processes and plays crucial roles in the regulation of cancer. In this study, we analyzed the proteome and K-acetylome in eight pairs of HCC tumors and normal adjacent tissues using a timsTOF Pro instrument. As a result, we identified 9219 K-acetylation sites in 2625 proteins, of which 1003 sites exhibited differential acetylation levels between tumors and normal adjacent tissues. Interestingly, many novel tumor-specific K-acetylation sites were characterized, for example, filamin A (K865), filamin B (K697), and cofilin (K19), suggesting altered activities of these cytoskeleton-modulating molecules, which may contribute to tumor metastasis. In addition, we observed an overall suppression of protein K-acetylation in HCC tumors, especially for enzymes from various metabolic pathways, for example, glycolysis, tricarboxylic acid cycle, and fatty acid metabolism. Moreover, the expression of deacetylase sirtuin 2 (SIRT2) was upregulated in HCC tumors, and its role of deacetylation in HCC cells was further explored by examining the impact of SIRT2 overexpression on the proteome and K-acetylome in Huh7 HCC cells. SIRT2 overexpression reduced K-acetylation of proteins involved in a wide range of cellular processes, including energy metabolism. Furthermore, cellular assays showed that overexpression of SIRT2 in HCC cells inhibited both glycolysis and oxidative phosphorylation. Taken together, our findings provide valuable information to better understand the roles of K-acetylation in HCC and to treat this disease by correcting the aberrant acetylation patterns.     

极端耐盐碱菌株的筛选及其菌肥对盐碱条件下小麦生长和土壤环境的影响

为获得具有盐碱地改良应用潜力的耐盐碱菌株,将采集于东营盐碱地的土样稀释涂布于pH 9、盐浓度100 g·L-1的Gibbson改良培养基上,共获得18株细菌.通过提高盐浓度、pH值,最终获得在pH 12、盐浓度20%的条件下仍然可以生长的极端耐盐碱菌株N14.对N14进行形态学、生理生化特征和16S rDNA序列分析鉴定,结果表明:菌株N14为马氏芽孢杆菌.盆栽试验结果表明,与盐碱土(CK)相比,N14菌肥可以显著提高小麦的生物量,株高、鲜重、干重分别提高了21.8%、57.9%、41.7%;显著增加小麦叶绿素a、叶绿素b、叶绿素总量,增长率分别为36.4%、20.0%、31.7%;显著提高盐碱土壤中的蔗糖酶、脲酶和碱性磷酸酶的活性,增长率分别为23.2%、68.8%、106.5%;显著提高小麦根系的超氧化物歧化酶、过氧化物酶和过氧化氢酶的活性,增长率分别为109.6%、17.8%、50%;显著减少小麦根系丙二醛的含量,减少率为39.8%.本研究为极端耐盐碱菌的应用提供了一条新思路,为盐碱地的改良提供了一条新途径.     

中国东部地区黑葡萄穗霉(Stachybotrys chartarum)菌多样性分析及其生态位研究

黑葡萄穗霉能产生多种毒素, 严重影响人类健康和生活, 因而受到了科学界广泛关注。从中国东部地区不同生境中, 采集261份样品, 分离获得丝孢菌13属33种, 其中黑葡萄穗霉1142株, 对其菌株资源多样性和生态位进行研究, 目的是为我国防控黑葡萄穗霉病提供理论指导和资源支持。结果表明: 黑葡萄穗霉在纸片、墙壁、石棉板和石膏板中分布较广, 其优势度分别为91%、90%、91%和89%; 不同生境中其分布数量和丰富度各不相同, 物种丰富度最大的是土壤, 最小的为石膏板和空气; 生态位宽度为4.5138, 属于广生态位种; 不同生境中其群落相似性系数也各不相同, 石膏板和墙壁相似性系数最大为0.7964; 与G7黑乌刺霉菌生态位重叠指数最大为0.8989, 与其他种类生态位重叠指数较低。黑葡萄穗霉菌在我国东部地区广泛存在, 其生态分布、发生规律与生境中纤维素、钙质和湿度有密切关系。     

解脂亚罗酵母菌体外降甘油三酯降胆固醇效果研究

筛选出高效降三酰甘油降胆固醇菌株,为新型药物、食品的制备提供优良菌株。从样品中筛选分离出酵母菌株,并测定菌株降三酰甘油能力,采用磷硫铁比色法测定菌株降胆固醇能力,通过耐酸、耐胆盐及毒性实验研究菌株各项性能,通过生理生化及26S rDNA法对菌株进行鉴定。结果显示,试验筛选出1株高效降脂降胆固醇酵母菌EAM-ZT003T,降三酰甘油能力高达80.2%,菌株具有很好的耐酸、耐胆盐能力,为期42 d的小鼠毒性试验发现,小鼠未出现异常体征,未发现异常死亡,且解剖观察各器官一切正常,菌株经26S rDNA鉴定为解脂亚罗酵母菌(Yarrowia lipolytica)。