Genome-Wide Linkage-Disequilibrium Profiles from Single Individuals

Although the analysis of linkage disequilibrium (LD) plays a central role in many areas of population genetics, the sampling variance of LD is known to be very large with high sensitivity to numbers of nucleotide sites and individuals sampled. Here we show that a genome-wide analysis of the distribution of heterozygous sites within a single diploid genome can yield highly informative patterns of LD as a function of physical distance. The proposed statistic, the correlation of zygosity, is closely related to the conventional population-level measure of LD, but is agnostic with respect to allele frequencies and hence likely less prone to outlier artifacts. Application of the method to several vertebrate species leads to the conclusion that >80% of recombination events are typically resolved by gene-conversion-like processes unaccompanied by crossovers, with the average lengths of conversion patches being on the order of one to several kilobases in length. Thus, contrary to common assumptions, the recombination rate between sites does not scale linearly with distance, often even up to distances of 100 kb. In addition, the amount of LD between sites separated by <200 bp is uniformly much greater than can be explained by the conventional neutral model, possibly because of the nonindependent origin of mutations within this spatial scale. These results raise questions about the application of conventional population-genetic interpretations to LD on short spatial scales and also about the use of spatial patterns of LD to infer demographic histories.     

Increasing the emphasis of vocational qualifications

Understanding how people think and how people organise knowledge are always major concerns for educational researchers. Hence, educators have developed various ways of representing learners' ‘cognitive structures‘. This article provides a review of the use of five methods of representing cognitive structures - free word association, controlled word association, tree construction, concept map and flow map. Through comparing the types of analyses that are generated from these cognitive structure representation methods, this paper discusses the applications, as well as the limitations, among these methods.     

An additional locus (PI4) in the protease inhibitor (PI) gene cluster of pigs

A further α-protease inhibitor system, PI4, was detected in porcine sera using either 2D agarose gel, pH 5.0-PAGE, pH 9.0, or ID PAGE followed by immunoblotting with rabbit anti-porcine PI2 or PI3 antisera. PI4 inhibited chymotrypsin, but not trypsin. Seven allelic variants of PI4 were described. By haplotyping of a-protease inhibitor systems in 52 complete families it was shown that PI4 locus belongs to the PI gene cluster. The probable order of the PI loci was: PI1, PO1A, PI2, PI4, PI3.     

Evidence for differential top-down and bottom-up suppression in posterior parietal cortex

When searching for an object, we usually avoid items that are visually different from the target and objects or places that have been searched already. Previous studies have shown that neural activity in the lateral intraparietal area (LIP) can be used to guide this behaviour; responses to task irrelevant stimuli or to stimuli that have been fixated previously in the trial are reduced compared with responses to potential targets. Here, we test the hypothesis that these reduced responses have a different genesis. Two animals were trained on a visual foraging task, in which they had to find a target among a number of physically identical potential targets (T) and task irrelevant distractors. We recorded neural activity and local field potentials (LFPs) in LIP while the animals performed the task. We found that LFP power was similar for potential targets and distractors but was greater in the alpha and low beta bands when a previously fixated T was in the response field. We interpret these data to suggest that the reduced single-unit response to distractors is a bottom-up feed-forward result of processing in earlier areas and the reduced response to previously fixated Ts is a result of active top-down suppression.     

Photofunctional Eu/Tb hybrid material with inorganic silica covalently linking polymer chain through their double functionalization

In the context, 2-thiosalicylic acid (TSA) is modified with two crosslinking reagents (3-chloropropyltrimethoxysilane (CTPMS), 3-(triethoxysilyl)-propyl isocyanate (TESPIC)) to achieve two kinds of sulfide bridges (abbreviated as TSA-CSi and TSA-TSi, respectively). And two organic polymers (poly acrylamide (PAM) and poly ethylene glycol (PEG)) are also functionalized with TESPIC to form their polymeric silane derivatives PAMSi and PEGSi. Then series of multi-component Eu³⁺/Tb³⁺ hybrid material have been assembled with inorganic silica covalently linking organic polymer through the sulfide bridges after co-hydrolysis and co-polycondensation with the above inorganic or organic alkoxyl compounds (TSA-CSi(TSi), PAMSi(PEGSi)) and tetraethoxysilane (TEOS). These hybrid material are characterized in details to compare with the binary hybrid material without organic polymer unit, whose results reveal that the photoluminescence properties of the hybrid system are improved with the introduction of the polymer unit.     

Linkage studies between the halothane (Hal), phosphohexose isomerase (Phi) and the S(A -O) and H red blood cell loci of Pietrain/ Hampshire and Landrace pigs

Frequency of blood group factors at the A-O and H loci were markedly altered within halothane positive (HP) and halothane negative (HN) composite synthetic Pietrain/Hampshire lines (PTH) over four generations of selection.
Linkage studies on the litters from 45 double backcross and 20 mixed and intercross matings, involving the S(A-O), H, Phi and Hal loci, were made in the PTH line and halothane positive and negative selected British Landrace lines. Crossing-over frequencies of 0.05 ± 0.04, 0.05 ± 0.03 and 0.1 ± 0.03 were established between Phi and Hal, H and Hal , and Phi and H respectively. An unequal crossing-over frequency between Phi and H was found when the alleles Ha and Hcd were compared. The difference in recombination frequency between the Ha and Hcd alleles amounted to 0.04 to 0.06.
No cross-overs were observed between the S(A -O ) and Phi, H or Hal loci in 15 families studied. The position of the S locus in relation to the other loci could not be established, but statistical evidence of association favours a haplotype sequence of Phi-Hal-S-H .