Characterization of eight polymorphic microsatellite loci for the leopard coralgrouper (Plectropomus leopardus Lacepède)

Eight polymorphic microsatellite loci were isolated and characterized from a microsatellite DNA-enriched DNA library for the leopard coralgrouper (Plectropomus leopardus Lacepède, 1802), a popular food fish in the East Indies. These loci showed polymorphism information content ranging from 0.493 to 0.854, allele numbers ranging from 3 to 10, effective allele numbers ranging from 2.2 to 7.6, and observed and expected heterozygosities from 0.375 to 0.906 and 0.544 to 0.868 respectively. Thus, we expect that these markers will be useful for population genetic and breeding studies of the leopard coralgrouper.     

The primary structure of hemoglobin from amur-leopard (Panthera pardus orientalis)

The complete amino acid sequence of the major component of hemoglobin from amur-leopard (Panthera pardus orientalis) is presented. The major component accounts for more than 90% of the total hemoglobin. Separation of the globin subunits was achieved by ion-exchange chromatography on CM-cellulose in urea. The sequence was studied by automatic Edman degradation of tryptic and hydrolytic peptides. Alignment was carried out with human hemoglobin sequence. The NH₂ terminus is blocked with Ac-serine. The data are compared with other mammalian hemoglobins and results are discussed with respect to sequence and physiology.85th communication on hemoglobin.     

雪豹的微卫星DNA遗传多样性

利用微卫星DNA标记,对来自青海囊谦县、治多县以及甘肃阿克塞县3个地区的36份雪豹(Panthera uncia)粪便DNA样品进行了遗传多样性研究。结果显示,在8个微卫星位点上共检测到57个等位基因,有效等位基因数为2.190~5.488,平均每个位点的等位基因数为7.130,基因频率分布不均匀;期望杂合度为0.543~0.847,平均0.759;多态信息含量为0.458~0.829,平均0.722;表明这8个微卫星位点均为高度多态性位点,有较丰富的遗传多样性。3个样地雪豹居群之间的遗传距离与地理距离相关,地理距离最近的青海省囊谦县和治多县的雪豹居群遗传距离最小。根据雪豹平均遗传分化度Fst(0.053)、平均基因流(4.488)以及STRUCTURE聚类分析结果(当K=1时,ln P(D)值最大),推测3个居群间虽然有一定的遗传距离,但均来自同一个种群,暂无分化现象。     

Livestock Predation—Insights From Problem Animal Control Registers in Botswana

Abstract: Problem Animal Control Registers, where farmers report livestock losses due to predators as a prerequisite for financial compensation, allow quantifying the human-predator conflict. We analyzed such registers from the Kweneng District of Botswana to assess the impact of native predators on livestock over 3 years. Leopards (Panthera pardus), lions (Panthera leo), wild dogs (Lycaon pictus), brown hyenas (Hyaena brunnea), and cheetahs (Acinonyx jubatus) altogether claimed 2,272 head of livestock. During 2002, the year with the highest impact, the number of animals reported depredated (954) represented 0.34% of the livestock in the district. Leopards and lions caused 64% of the losses. Leopard livestock predation mainly affected calves and was consistent over the district and over time. In contrast, lion predation concentrated on adult cattle, was characterized by local hot spots close to reserve borders, decreased with increasing distance to a reserve, and increased during 2002, an unusually dry year. Interviews with 60 farmers and herders within 30 km of Khutse and Central Kalahari Game Reserves revealed an annual loss of 2.2% of their livestock to predators. Here, small farms (max. 100 domestic animals) suffered relatively higher losses than large, commercial farms, not only due to predation (small farms: 11.7%; large farms: 1.0%) but also from other causes (small: 12.6%; large: 2.8%), even though herders on large farms guarded 5 times more livestock per person than those on small farms. To reduce livestock predation in most of the district where lions are absent, we recommend maternity corrals for pregnant females and calves to better protect vulnerable calves during day and night. In areas close to a reserve where lions roam, herders' incentives to keep all livestock protected in a corral at night have to be enhanced because, according to the registers, only 3 predation cases were reported to have happened inside a corral.     

Reptilian transferrins: evolution of disulphide bridges and conservation of iron-binding center

Transferrins, found in invertebrates and vertebrates, form a physiologically important family of proteins playing a major role in iron acquisition and transport, defense against microbial pathogens, growth and differentiation. These proteins are bilobal in structure and each lobe is composed of two domains divided by a cleft harboring an iron atom. Vertebrate transferrins comprise of serotransferrins, lactoferrins and ovotransferrins. In mammals serotransferrins transport iron in physiological fluids and deliver it to cells, while lactoferrins scavenge iron, limiting its availability to invading microbes. In oviparous vertebrates there is only one transferrin gene, expressed either in the liver to be delivered to physiological fluids as serotransferrin, or in the oviduct with a final localization in egg white as ovotransferrin. Being products of one gene sero- and ovotransferrin are identical at the amino-acid sequence level but with different, cell specific glycosylation patterns. Our knowledge of the mechanisms of transferrin iron binding and release is based on sequence and structural data obtained for human serotransferrin and hen and duck ovotransferrins. No sequence information about other ovotransferrins was available until our recent publication of turkey, ostrich, and red-eared turtle (TtrF) ovotransferrin mRNA sequences [Ciuraszkiewicz, J., Olczak, M., Watorek, W., 2006. Isolation, cloning and sequencing of transferrins from red-eared turtle, African ostrich and turkey. Comp. Biochem. Physiol. 143 B, 301-310]. In the present paper, ten new reptilian mRNA transferrin sequences obtained from the Nile crocodile (NtrF), bearded dragon (BtrF), Cuban brown anole (AtrF), veiled and Mediterranean chameleons (VtrF and KtrF), sand lizard (StrF), leopard gecko (LtrF), Burmese python (PtrF), African house snake (HtrF), and grass snake (GtrF) are presented and analyzed. Nile crocodile and red-eared turtle transferrins have a disulphide bridge pattern identical to known bird homologues. A partially different disulphide bridge pattern was found in the Squamata (snakes and lizards). The possibility of a unique interdomain disulphide bridge was predicted for LtrF. Differences were found in iron-binding centers from those of previously known transferrins. Substitutions were found in the iron-chelating residues of StrF and TtrF and in the synergistic anion-binding residues of NtrF. In snakes, the transferrin (PtrF, HtrF and GtrF) N-lobe "dilysine trigger" occurring in all other known transferrins was not found, which indicates a different mechanism of iron release.     

三江源地区雪豹保护优先区规划

为了将有限资源合理投放到关键区域, 实现物种保护成效的最大化, 找出质量最好的栖息地及它们之间的迁徙通道是制定保护规划的第一步。本研究以三江源的雪豹(Panthera uncia)栖息地为对象, 基于野外调查数据和高分辨率卫星遥感数据, 利用物种分布模型、保护规划模型和连通度分析工具, 找出了三江源地区雪豹的核心栖息地分布和潜在迁徙通道位置, 分析了目前保护中的潜在威胁, 并提出了针对三江源西、中、东三块区域的不同保护对策。结果表明: (1)三江源西部核心栖息地比较小而破碎, 但迁徙通道较多且没有明显窄点, 未来应关注青藏线的潜在阻碍作用, 同时应防范道路沿线的野生动物盗猎; (2)中部区域横跨玉树-杂多-囊谦的雪豹栖息地是三江源最大的核心雪豹栖息地, 在连通其他种群中也处于中心地位, 应通过种群监测确定其健康稳定, 对开发、偷猎等威胁防微杜渐, 保持其源种群的作用; (3)东部区域人口密度高, 受人类活动的影响最大, 需保证阿尼玛卿、年保玉则两块核心栖息地的质量, 并重点监测甘德县境内的省道处雪豹的迁徙通道是否畅通。三江源地区雪豹栖息地总体质量较好, 建议将维持核心源种群的稳定性, 保持种群间迁徙通道的畅通作为三江源的雪豹景观保护工作的整体目标。未来应充分利用天地一体化监测手段, 开展重要保护物种栖息地状况的评估和预警, 尤其是非保护地区域物种核心栖息地的开发建设活动。     

Meta‐replication,sampling bias,and multi‐scale model selection: A case study on snow leopard (Panthera uncia) in western China

Replicated multiple scale species distribution models (SDMs) have become increasingly important to identify the correct variables determining species distribution and their influences on ecological responses. This study explores multi‐scale habitat relationships of the snow leopard (Panthera uncia) in two study areas on the Qinghai–Tibetan Plateau of western China. Our primary objectives were to evaluate the degree to which snow leopard habitat relationships, expressed by predictors, scales of response, and magnitude of effects, were consistent across study areas or locally landcape‐specific. We coupled univariate scale optimization and the maximum entropy algorithm to produce multivariate SDMs, inferring the relative suitability for the species by ensembling top performing models. We optimized the SDMs based on average omission rate across the top models and ensembles’ overlap with a simulated reference model. Comparison of SDMs in the two study areas highlighted landscape‐specific responses to limiting factors. These were dependent on the effects of the hydrological network, anthropogenic features, topographic complexity, and the heterogeneity of the landcover patch mosaic. Overall, even accounting for specific local differences, we found general landscape attributes associated with snow leopard ecological requirements, consisting of a positive association with uplands and ridges, aggregated low‐contrast landscapes, and large extents of grassy and herbaceous vegetation. As a means to evaluate the performance of two bias correction methods, we explored their effects on three datasets showing a range of bias intensities. The performance of corrections depends on the bias intensity; however, density kernels offered a reliable correction strategy under all circumstances. This study reveals the multi‐scale response of snow leopards to environmental attributes and confirms the role of meta‐replicated study designs for the identification of spatially varying limiting factors. Furthermore, this study makes important contributions to the ongoing discussion about the best approaches for sampling bias correction.     

A cost-effective blood DNA methylation-based age estimation method in domestic cats,Tsushima leopard cats (Prionailurus bengalensis euptilurus) and Panthera species,using targeted bisulphite sequencing and machine learning models

Individual age can be used to design more efficient and suitable management plans in both in situ and ex situ conservation programmes for targeted wildlife species. DNA methylation is a promising marker of epigenetic ageing that can accurately estimate age from small amounts of biological material, which can be collected in a minimally invasive manner. In this study, we sequenced five targeted genetic regions and used 8–23 selected CpG sites to build age estimation models using machine learning methods at only about $3–7 per sample. Blood samples of seven Felidae species were used, ranging from small to big, and domestic to endangered species: domestic cats (Felis catus, 139 samples), Tsushima leopard cats (Prionailurus bengalensis euptilurus, 84 samples) and five Panthera species (96 samples). The models achieved satisfactory accuracy, with the mean absolute error of the most accurate models recorded at 1.966, 1.348 and 1.552 years in domestic cats, Tsushima leopard cats and Panthera spp. respectively. We developed the models in domestic cats and Tsushima leopard cats, which were applicable to individuals regardless of health conditions; therefore, these models are applicable to samples collected from individuals with diverse characteristics, which is often the case in conservation. We also showed the possibility of developing universal age estimation models for the five Panthera spp. using only two of the five genetic regions. We do not recommend building a common age estimation model for all the target species using our markers, because of the degraded performance of models that included all species.     

Studying Large Mammals With Imperfect Detection: Status and Habitat Preferences of Wild Cattle and Large Carnivores in Eastern Cambodia

Studying large mammal species in tropical forests is a conservation challenge with species’ behavior and ecology often increasing the probability of non‐detection during surveys. Consequently, knowledge of the distribution, status, and natural history of many large mammal species in Southeast Asia is limited. I developed occupancy models from camera‐trapping data, thereby accounting for imperfect detection at sampling sites, to clarify the status and habitat requirements of four globally threatened or near threatened large mammals (banteng Bos javanicus, gaur Bos gaurus, dhole Cuon alpinus, and leopard Panthera pardus) in Mondulkiri Protected Forest, eastern Cambodia. Camera traps were operational for >3500 trap nights with 202 photographic encounters of the four study species. Model averaged occupancy estimates were between 5 percent (leopard) and 140 percent (gaur) higher than naive estimates (i.e., proportion of camera‐trap sites species recorded from) thus highlighting the importance of accounting for detectability during conservation surveys. I recommend the use of an occupancy framework when using camera‐trap data to study the status, ecology, and habitat preferences of poorly known and elusive species. The results highlight the importance of mixed deciduous and semi‐evergreen forest for wild cattle in eastern Cambodia and I emphasize that these habitats must be considered in conservation planning across the Lower Mekong Dry Forest Ecoregion.     

Habitat Characteristics of Lowland Leopard Frogs in Mountain Canyons of Southeastern Arizona

Abstract: Many aquatic species in the arid southwestern United States are imperiled, persisting primarily in isolated, low-order streams that are increasingly vulnerable to stochastic disturbances. During 2003 and 2004, we surveyed 39 mountain canyons in southeastern Arizona, USA, for lowland leopard frogs (Rana yavapaiensis), a species that has declined in abundance and distribution across its range in the United States. We quantified habitat features at 2 spatial scales, canyon and pool, to identify features that distinguished sites inhabited by frogs from those uninhabited by frogs. Canyons inhabited by frogs had watersheds that averaged 8.1 km² larger (SE = 2.52), pools that averaged 37.8 m³ greater (9.30) in volume, gradients that averaged 4.1% (1.40%) less steep, and locations that averaged 3.2 km closer (1.06) to the nearest valley stream than did uninhabited canyons. Plunge pools inhabited by frogs averaged 13.5% (5.66%) more perimeter vegetation, 11.2% (5.34%) more canopy cover, and 1.9 (0.60) more refuges than uninhabited pools. In general, canyons that provided more perennial water during dry summer months and plunge pools that provided more bank heterogeneity were more likely to be inhabited by frogs. Conservation of lowland leopard frogs and other aquatic species that inhabit xeric systems in the southwestern United States depends principally on maintaining riparian ecosystems that provide habitat for these species and the adjacent uplands that influence the structure and function of these systems. Therefore, both riparian areas and their adjacent uplands must be managed to maintain habitat for organisms that inhabit these rare and diverse ecosystems.