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31.
Phenotypic biomonitoring using multivariate flow cytometric analysis of multi-stained microorganisms 总被引:2,自引:0,他引:2
Wikström P Johansson T Lundstedt S Hägglund L Forsman M 《FEMS microbiology ecology》2001,34(3):187-196
A new method for monitoring phenotypic profiles of pure cultures and complex microbial communities was evaluated. The approach was to stain microorganisms with a battery of fluorescent dyes prior to flow cytometry analysis (FCM) and to analyse the data using multivariate methods, including principal component analysis and partial least squares. The FCM method was quantitatively evaluated using different mixtures of pure cultures as well as microbial communities. The results showed that the method could quantitatively and reproducibly resolve both populations and communities of microorganisms with 5% abundance in a diverse microbial background. The feasibility of monitoring complex microbial communities over time during the biodegradation of naphthalene using the FCM method was demonstrated. The biodegradation of naphthalene occurred to differing extents in microcosms representing three different types of aromatic-contaminated groundwater and a sample of bio-basin water. The FCM method distinguished each of these four microbial communities. The phenotypic profiles were compared with genotypic profiles generated by random-amplified polymorphic DNA analysis. The genotypic profiles of the microbial communities described only the microbial composition, and not their functional change, whereas the phenotypic profiles seemed to contain information on both the composition and the functional change of the microorganisms. Furthermore, event analysis of the FCM data showed that microbial communities with initially differing compositions could converge towards a similar composition if they had a capacity for high levels of degradation, whereas microbial communities with similar initial compositions could diverge if they differed in biodegrading ability. 相似文献
32.
We apply a linear mixed-effects model to multivariate failure time data. Computation of the regression parameters involves the Buckley-James method in an iterated Monte Carlo expectation-maximization algorithm, wherein the Monte Carlo E-step is implemented using the Metropolis-Hastings algorithm. From simulation studies, this approach compares favorably with the marginal independence approach, especially when there is a strong within-cluster correlation. 相似文献
33.
David Griffiths 《The Journal of animal ecology》1998,67(5):795-804
1. Despite a substantial body of work there remains much disagreement about the form of the relationship between organism abundance and body size. In an attempt at resolving these disagreements the shape and slope of samples from simulated and real abundance–mass distributions were assessed by ordinary least squares regression (OLS) and the reduced major axis method (RMA).
2. It is suggested that the data gathered by ecologists to assess these relationships are usually truncated in respect of density. Under these conditions RMA gives slope estimates which are consistently closer to the true slopes than OLS regression.
3. The triangular relationships reported by some workers are found over smaller mass and abundance ranges than linear relations. Scatter in slope estimates is much greater and positive slopes more common at small sample sizes and sample ranges. These results support the notion that inadequate and truncated sampling is responsible for much of the disagreement reported in the literature.
4. The results strongly support the notion that density declines with increasing body mass in a broad, linear band with a slope around −1. However there is some evidence to suggest that this overall relation results from a series of component relations with slopes which differ from the overall slope. 相似文献
2. It is suggested that the data gathered by ecologists to assess these relationships are usually truncated in respect of density. Under these conditions RMA gives slope estimates which are consistently closer to the true slopes than OLS regression.
3. The triangular relationships reported by some workers are found over smaller mass and abundance ranges than linear relations. Scatter in slope estimates is much greater and positive slopes more common at small sample sizes and sample ranges. These results support the notion that inadequate and truncated sampling is responsible for much of the disagreement reported in the literature.
4. The results strongly support the notion that density declines with increasing body mass in a broad, linear band with a slope around −1. However there is some evidence to suggest that this overall relation results from a series of component relations with slopes which differ from the overall slope. 相似文献
34.
Introduction – The use of the average analytical signal for the construction of curves by the least squares method (LSM) over the standard addition method (SAM) is widespread. It would be advantageous, however, to find a way to avoid intermediary averages, which are known to be the cause of significant increases in standard deviations (SD). Objective – To develop a protocol that uses all gathered data to create curves by LSM over SAM. To use Excel® for the estimation of y = mx + b and R2 rather than using LSM equations for the SD of m, x and b. Methodology – The level of lead (II) in the bark (cork) of Quercus suber Linnaeus was determined using differential pulse anodic stripping voltammetry (DPASV). Three current samples were taken for each of the four standard additions. These signals were combined for adjustment by LSM. The results were compared with those obtained after averaging the current for each addition, and the expression of uncertainty in the measurements determined. Results – The new method shows an expanded uncertainty of ± 0.3321 μg/g (nearly 1.42%). The difference between the results obtained by the new and the old method is 0.01 μg/g (23.41 and 23.40 μg/g). The limit of detection changed approximately from 4.8 to 4 μg/g and the relative SD approximately from 9 to 6%. Conclusion – The absence of intermediary averages in curves improved the determination of lead (II) in cork by DPASV. Estimation of SD only with LSM equations produced results that were significantly worse. The changes are large enough to transform an apparently internally non‐validated procedure (repeatability for precision) into an internally validated procedure. Copyright © 2009 John Wiley & Sons, Ltd. 相似文献
35.
36.
HAKAN GÜR 《Biological journal of the Linnean Society. Linnean Society of London》2010,100(3):695-710
A phylogenetic comparative analysis of geographic variation in body size of an obligately hibernating marmotine species (Anatolian ground squirrels, Spermophilus xanthoprymnus) is presented in relation to environmental variables that pertain to four principal hypotheses (heat conservation, heat dissipation, primary productivity, and seasonality hypotheses). Adult Anatolian ground squirrels (78 males and 90 females) were collected from ten geographic localities in Anatolia for use in morphometric analyses. First, the study tested whether significant variation in body size occurs over the geographic range of S. xanthoprymnus. Then, to understand the possible cause(s) of the observed pattern of geographic variation in body size of Anatolian ground squirrels, four hypotheses were tested, separately and simultaneously, using a phylogenetic comparative method. Overall, food availability (primary productivity hypothesis) and, especially in males, over‐winter fasting endurance (seasonality hypothesis) are likely the primary underlying mechanisms generating the observed pattern of increasing body size towards colder, more seasonal environments, with higher summer precipitation and productivity (or a Bergmannian size pattern). © 2010 The Linnean Society of London, Biological Journal of the Linnean Society, 2010, 100 , 695–710. 相似文献
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38.
Bitterness represents a major challenge in industrial application of food protein hydrolysates or bioactive peptides and is a major factor that controls the flavor of formulated therapeutic products. The aim of this work was to apply quantitative structure-activity relationship modeling as a tool to determine the type and position of amino acids that contribute to bitterness of di- and tri-peptides. Datasets of bitter di- and tri-peptides were constructed using values from available literature, followed by modeling using partial least square (PLS) regression based on the three z-scores of 20 coded amino acids. Prediction models were validated using cross-validation and permutation tests. Results showed that a single-component model could explain 52 and 50% of the Y variance (bitterness threshold) of bitter di- and tri-peptides, respectively. Using PLS regression coefficients, it was determined that hydrophobic amino acids at the carboxyl-terminus and bulky amino acid residues adjacent to the carboxyl terminal are the major determinants of the intensity of bitterness of di- and tri-peptides. However, there was no significant (p > 0.05) correlation between bitterness of di- and tri-peptides and their angiotensin I-converting enzyme-inhibitory properties. 相似文献
39.
40.
应用近红外光谱法估测小麦叶片糖氮比 总被引:3,自引:0,他引:3
糖氮比能够反映作物碳氮代谢的协调程度,及时、准确地监测糖氮比对于作物氮素营养诊断和调控具有重要意义.本研究以不同年份、品种、施氮水平的小麦大田试验为基础,获取鲜叶和粉末状干叶近红外(NIR)光谱及糖氮比信息,分别运用偏最小二乘法(partial least squares, PLS)、BP神经网络(back propagation neural network, BPNN)和小波神经网络(wavelet neural network, WNN)3种方法建立了小麦叶片糖氮比预测模型,并利用随机选择的样品集对所建模型进行测试和检验.结果表明: 小麦鲜叶光谱模型预测性能不佳;而干叶片预测模型表现了较好的准确性,在1655~2378 nm谱区范围内基于3种方法构建的干叶粉末糖氮比估算模型,其预测均方根误差均低于0.3%,决定系数均高于0.9.比较而言,WNN法表现最佳.总体显示,近红外光谱法可以准确预测小麦叶片糖氮比状况,为科学诊断糖氮比提供了理论基础和技术途径. 相似文献