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31.
Detection of native-like models for amino acid sequences of unknown three-dimensional structure in a data base of known protein conformations. 总被引:13,自引:0,他引:13
We present an approach which can be used to identify native-like folds in a data base of protein conformations in the absence of any sequence homology to proteins in the data base. The method is based on a knowledge-based force field derived from a set of known protein conformations. A given sequence is mounted on all conformations in the data base and the associated energies are calculated. Using several conformations and sequences from the globin family we show that the native conformation is identified correctly. In fact the resolution of the force field is high enough to discriminate between a native fold and several closely related conformations. We then apply the procedure to several globins of known sequence but unknown three dimensional structure. The homology of these sequences to globins of known structures in the data base ranges from 49 to 17%. With one exception we find that for all globin sequences one of the known globin folds is identified as the most favorable conformation. These results are obtained using a force field derived from a data base devoid of globins of known structure. We briefly discuss useful applications in protein structural research and future development of our approach. 相似文献
32.
Gérald Chouinard Charles Vincent Stuart B. Hill Bernard Panneton 《Journal of Insect Behavior》1992,5(3):385-394
From 12 to 19 May 1987, during Morspur apple bloom, 21 radioactively labeled (65
Zn) adult plum curculios, Conotrachelus nenuphar (Herbst), were released within a field cage containing four dwarf apple trees and located three times a day. A technique was developed for quickly obtaining (x, y, z)coordinates of location for adults foraging within apple trees. Cyclic patterns of behavior were detected using spectral analysis procedures. Over 70% of plum curculios exhibited diel periodicity with respect to activity and rate of movement, 36% exhibited such periodicity with respect to presence in the trees, and 27% with respect to movements from the center to the periphery of the canopy. Presence in fruit clusters, height in the trees, and movements along east-west and north-south axes showed little or no periodicity. Factors triggering cyclic behavior and practical implications of the results are discussed. 相似文献
33.
Martin W. Ganal Meredith W. Bonierbale Marion S. Roeder William D. Park Steven D. Tanksley 《Molecular & general genetics : MGG》1991,225(3):501-509
Summary Genes for the major storage protein of potato, patatin, have been mapped genetically and physically in both the potato and tomato genomes. In potato, all patatin genes detected by the cDNA clone pGM01 map to a single locus at the end of the long arm of chromosome 8. By means of pulsed field gel electrophoresis (PFGE) it was possible further to delimit this locus, containing 10–15 copies of the gene, to a maximum size of 1.4 million base pairs. Hybridizations with class-specific clones suggest that the locus is at least partially divided into domains containing the two major types of patatin genes, class I and II. In tomato, patatin-homologous sequences were found to reside at the orthologous locus at the end of chromosome 8. The approximately three copies in tomato were localized by PFGE to a single fragment of 300 kilobases. Whereas the class II-specific 5 promoter sequences reside in tomato at the same locus as the coding sequences, the single class I-specific copy of the 5 promoter sequences was localized on chromosome 3 with no coding sequence attached to it. A clone from this chromosome 3 locus of tomato was isolated and by restriction fragment length polymorphism mapping it could be further shown that a similar class I-specific sequence also exists on chromosome 3 of potato. As in tomato, this copy on chromosome 3 is not linked to a coding sequence for patatin. The results are discussed with respect to genome evolution and PFGE analysis of complex gene families. 相似文献
34.
Carbon isotope ratios (13C) for bubble CH4 in a submerged paddy soil were studied in Yokohama, Japan, throughout a growing period, and its variation was found. Bubble CH4 collected from other 33 paddy fields in Japan was also measured for its 13C and the results agreed with Yokohama. Furthermore, the variation occurred irrespective of the amount and the type of supplied organic substances to the fields (whole rice straw, rice stubble, or compost). The 13C value (average value of -55.9 ± 4.24) from these paddy fields was higher than those of the CH4 emitted from African and North American paddies. The higher value was little affected by their difference in the supplied organic substances. CH4 oxidation likely occurs for bubble CH4 in the shallow paddy fields. A rough estimate of the total CH4 production, using isotope mass balance, showed that 17 to 22% of organic carbon supplied to Japanese paddies transforms to CH4. 相似文献
35.
Summary A single scan method for the suppression of signals arising from zero-quantum coherences (ZQC) is analysed with respect to its application to NMR experiments on proteins. The ZQC are dephased during a spinlock period due to the natural RF inhomogeneity of a commercial probe. A quantitative analysis of a ZQC-compensated NOESY experiment is given. Although the build-up curve for the cross peaks in ZQC-compensated NOESY experiments differ from those in uncompensated experiments, interproton distances in medium-sized proteins can be evaluated with high accuracy. The proposed method is compared with other techniques for ZQC suppression. 相似文献
36.
Summary A rapid method for recording three-dimensional triple-resonance experiments utilising pulsed field gradient techniques is proposed, and applied to the HNCO experiment. In order to optimise the sensitivity of the method, a short phase cycle is used in conjunction with the pulsed field gradients to select the desired coherence transfer pathway. The method is demonstrated for the HU protein. 相似文献
37.
S. N. Kovalenko S. G. Stepanian V. P. Chuev M. M. Asimov V. M. Nikitchenko V. P. Chernykh 《Molecular Engineering》1992,2(2):153-163
In order to improve the generating and photochemical properties of coumarin laser dyes, the following active media were synthesized: inclusion complexes of -cyclodextrin (-CD) and 7-amino-4-methylcoumarins (COU1, COU102, COU120). Complex formation processes were studied, and the structure of the inclusion complexes was estimated using the method of MM2 molecular mechanics. The data obtained suggest the reasons underlying the complex structure effects on their spectral, luminescent and generating characteristics. 相似文献
38.
不同利用方式下稻田效益的综合评价 总被引:1,自引:0,他引:1
一、引言评价是多目标系统优化和决策的基础。和任何其他农业生态系统一样,稻田生态系统具有多目标、多功能的特点,单项指标难以反映系统的优劣。目前,川东南地区稻田开发利用方式多种多样,但效益评价主要是采用简单的比较分析或粗放的定性描述,尚未形成系统的 相似文献
39.
40.
Characteristics of dispersal in sexually mature dragonflies 总被引:1,自引:0,他引:1
Abstract.
- 1 The population dynamics of a natural population of Sympetrum danae (Sulzer) were studied, by means of a mark—release—recapture method, to find indications of dispersal by mature adults. Additional information on orientation and the influence of phenotype (including age), density and weather was obtained by observations under natural conditions and in a large outdoor field cage.
- 2 80% of all mature adults caught around the natural pond were estimated to be immigrants. Considerable immigration was confirmed by the abdomen length of unmarked matures which did not accord with that expected from the locally emerged population. Total numbers captured and the minimum number known to be alive fell sharply at the time when most individuals were mature. At the same time, new matures continued to enter and disappear from the study area at an increasing rate.
- 3 Dispersive behaviour (escape flights) in the field enclosure was primarily age dependent in both sexes: it occurred from an age of 25–30 days onwards. This coincides with the time-lag between the emergence peak and increased dispersal in the field. Secondary effects on escape flights suggested that males tended to abandon low density areas.
- 4 Males flew relatively more southward than females.