评介Smnh等的热河群40Ae-39Ar同位素测年结果

对Ｓｍｉｔｈ等１９９５年热河群４０Ａｒ－３９Ａｒ同位素测年工作的背景以及各样品的采样地点、层位与测年目的等作了补充介绍．由于Ｓｍｉｔｈ等的论文中将３组后期火山岩的测年结果分别误解为义县组下部与上部地层的同位素年龄,因而整体上混淆了义县组不同层位的测年结果．Ｓｍｉｔｈ等１９９５年发表的６组样品的测年数据实际上至少代表了４个与热河群义县组相关层位的４０Ａｒ－３９Ａｒ同位素年龄：１２２．９±０．３Ｍａ（凌源大新房子沉积层下伏火山岩）、１２２．１±０．２～１２２．５±０．３Ｍａ（凌源二十里堡沉积层）、１２１．５±０．９～１２１．６±０．５Ｍａ（义县金刚山沉积层上覆火山角砾岩）、１２０．８±０．４～１２１．４±０．７Ｍａ（后期火山岩）。     

An economic approach to isotopic enrichment of glycoproteins expressed from Sf9 insect cells

It is estimated that over half of all proteins are glycosylated, yet only a small number of the structures in the protein data bank are of intact glycoproteins. One of the reasons for the lack of structural information on glycoproteins is the high cost of isotopically labeling proteins expressed from eukaryotic cells such as in insect and mammalian cells. In this paper we describe modifications to commercial insect cell growth medium that reduce the cost for isotopically labeling recombinant proteins expressed from Sf9 cells. A key aspect of this work was to reduce the amount of glutamine in the cell culture medium while maintaining sufficient energy yielding metabolites for vigorous growth by supplementing with glucose and algae-derived amino acids. We present an analysis of cell growth and protein production in Sf9 insect cells expressing secreted Thy1-GFP fusion construct. We also demonstrate isotopic enrichment of the Thy-1 protein backbone with ¹⁵N and carbohydrates with ¹³C by NMR spectroscopy.Electronic supplementary material is available in the online version of this article at and is accessible for authorized users.     

Differences in δ13C and δ15N stable isotopes in the pearly razorfish Xyrichtys novacula related to the sex,location and spawning period

In the present study, Xyrichtys novacula (Labridae) were sampled at five locations around the islands of Ibiza and Formentera (western Mediterranean Sea). Isotopic signatures of δ¹³C, δ¹⁵N and the C:N ratio were analysed in relation to locality, sex and size differences. δ¹³C and δ¹⁵N partitioning was also studied in the reproductive spawning period. There were significant differences in the δ¹³C signature between localities for both sexes, but not for δ¹⁵N. Sex differences were also found with a mean ±s.e . value of ?17·38 ± 0·06‰δ¹³C and 8·36 ± 0·05‰δ¹⁵N for females and ?17·17 ± 0·07‰δ¹³C and 8·80 ± 0·06‰δ¹⁵N for males. Increasing total length in both sexes was positively correlated with δ¹⁵N enrichment and a significant positive linear regression was established for both variables. During the reproductive spawning period, there were changes in δ¹³C fractioning with enrichment in postspawning females and males (with respect to prespawning and spawning periods) and δ¹⁵N impoverishment in postspawning females (with respect to prespawning and spawning periods). Xyrichtys novacula uses local food sources, as confirmed by δ¹³C and δ¹⁵N, and females and males use different food sources, thus avoiding intraspecific competition. This was confirmed by δ¹⁵N enrichment as size increased. Spawning leads to special requirements for gonad maturation, which is reflected in the isotopic signatures for both sexes.     

How to usefully compare homologous plant genes and chromosomes as DNA sequences

There are four sequenced and publicly available plant genomes to date. With many more slated for completion, one challenge will be to use comparative genomic methods to detect novel evolutionary patterns in plant genomes. This research requires sequence alignment algorithms to detect regions of similarity within and among genomes. However, different alignment algorithms are optimized for identifying different types of homologous sequences. This review focuses on plant genome evolution and provides a tutorial for using several sequence alignment algorithms and visualization tools to detect useful patterns of conservation: conserved non-coding sequences, false positive noise, subfunctionalization, synteny, annotation errors, inversions and local duplications. Our tutorial encourages the reader to experiment online with the reviewed tools as a companion to the text.     

Selectivity of bacterial proteome fractionation based on differential solubility: a mass spectrometry evaluation

We investigate the selectivity achieved after differential solubilization of bacterial proteomes following two procedures, both based on successive extraction of proteins in solutions of increasing solubilizing power. Recently, these procedures have gained notable popularity and several commercial kits are now available. A total of 225 proteins in one case and 227 proteins in the other were identified by LC MSMS analysis; 146 of them were identified in both procedures. The proportions of proteins identified as present in only one fraction were 64 and 57%, respectively. The distribution of cytosolic, membrane, and ribosomal proteins among the successive extracts was analyzed in detail. The effect of (1) replacement of low-speed with high-speed centrifugation, (2) omission of detergents in urea solutions, (3) successive washes of pellets, and (4) reproducibility was evaluated. Proteins with positive grand averages of hydropathicity values and membrane proteins were found in all fractions. This study highlights the benefits and limitations of differential solubilization methods, focusing on practical aspects that may strongly influence their selectivity.     

Phytochrome-driven changes in respiratory electron transport partitioning in soybean (Glycine max. L.) cotyledons

After it was observed that light induces changes in electron partitioning between the cytochrome and the alternative pathway, the focus interest was directed to assessing what type of photoreceptors are involved and the extent of such modifications. Studies on 5-day-old soybean (Glycine max L.) cotyledons using an oxygen isotope fractionation technique showed that phytochrome is involved in changes in electron partitioning between the cytochrome and the alternative respiratory pathway. A follow-up of a previous study, showing that 5 min of white light caused changes in mitochondrial electron partitioning, demonstrated that while blue light was not involved in any such changes, red light caused a significant shift of electrons toward the alternative pathway. The major shift, observed after 24 h of light, is mainly due to both a decrease in the activity of the cytochrome pathway and an increase in the activity of the alternative pathway. The involvement of a phytochrome receptor was confirmed by demonstration of reversibility by far-red light. The implications of the possible involvement of phytochrome in the regulation of mitochondrial electron transport are discussed.     

Changes in nitrogen isotopic compositions during composting of cattle feedlot manure: effects of bedding material type

Temporal changes in delta(15)N of cattle feedlot manure during its composting with either rice hull (RHM) or sawdust (SDM) as bedding materials were investigated. Regardless of the bedding material used, the delta(15)N of total N in the manure increased sharply from +7.6 per thousand to +9.9 per thousand and from +11.4 per thousand to +14.3 per thousand, respectively, in RHM or SDM, within 10 days from the commencement of composting. Such increases could be attributed primarily to N loss via NH(3) volatilization and denitrification based on the very high delta(15)N values (greater than +20 per thousand) of NH(4)(+) and NO(3)(-) in the co-composted manure. The delta(15)N of total N in RHM was substantially lower (by more than 3 per thousand) than that in SDM, suggesting that the delta(15)N of the composted manure was affected not only by N loss but also by the type of bedding material used. Specifically, the higher N concentration in the rice hull than in the saw dust could lead to a greater (15)N isotope dilution.     

一株产虾青素的黄杆菌CF—60的研究

从土壤中分离到一株黄杆菌（Ｆｌａｖｏｂａｃｔｅｒｉｕｍｓｐｐ）Ｃ(Ｆ－６０),该菌的生长需Ｍｇ２＋存在,ＭｇＳＯ４·７Ｈ２Ｏ的最适浓度为０．２％;蛋白胨是该菌株生长的最好氮源,它不能利用无机氮。种龄超过９６ｈ的菌体不能在新鲜培养基中生长。经５４ｈ的２Ｌ恒化器发酵,生物量达６．８ｇ／Ｌ,色素产量为１０．６ｍｇ／Ｌ。该菌产生的类胡萝卜素成分简单,主要成分的含量为９０．３％,该成分经初步鉴定是分子结构中含有羰基和羟基的虾青素。     

Subcellular distribution of aluminum, bismuth, cadmium, chromium, copper, iron, manganese, nickel, and lead in cultivated mushrooms (Agaricus bisporus and Pleurotus ostreatus)

In this work, the distribution of nine metals in two types of cultivated mushroom had been investigated. For Agaricus bisporus, the biomass was separated into caps and stalks, and for Pleurotus ostreatus, the entire mushrooms were taken for analysis. Electrothermal atomic absorption spectrometry was used for total element determination in acid digests. For accuracy checking, the certified reference material (NIST 1571, citrus leaves) was analyzed. The results obtained for the two fungi species were within the ranges of concentration reported previously by other authors. Subcellular fractionation was accomplished by centrifugation of cell homogenates, which has been suspended in Tris-HCl buffer. In the first centrifugation (7300g, 4°C, 10 min), cell walls were separated (pellet I), and the second centrifugation (147,000g, 4°C, 60 min) yielded mixed membrane fraction (pellet II) and cytosol (supernatant II). Recoveries of the fractionation procedure were in the range 70–100% (with the exception of Fe). For all elements studied, the highest relative contributions were found in cytosol fractions of the fruiting bodies (63–72%, 49–76%, 44–93%, 26–87pc, 55–85%, 50–68%, 41–78%, 39–78%, 54–67% respectively for Al, Bi, Cd, Cr, Cu, Fe, Mn, Ni, and Pb. Lower contributions were found in cell walls (respectively 22–32%, 24–44%, 6.1–47%, 12–52%, 7.3–37%, 7.9–32%, 19–52%, 20–42%, and 25–38%) and only minute amounts in the mixed membrane fraction (3.0–5.8%, 0.7–7.0%, 0.7–8.3%, 1.0–22%, 7.5–14%, 16–24%, 1.1–19%, and 5.1–7.7%). The results obtained indicate that small water-soluble molecules were the primary forms of nine elements in two mushroom species studied. On the other hand, the evidence has been provided on elements binding to larger, water-insoluble molecules contained in the structures of cell wall and membranes. The relative distribution was both element and fungi dependent. Thus, in P. ostreatus, total element levels were higher than in A. bisporus, with the preference for their accumulation in cytosol. On the contrary, total element content in the latter fungi was lower; however, a clear tendency toward more efficient element incorporation to the water-insoluble structures was observed (no apparent differences between stalks and caps). These findings might contribute in a better understanding of the accumulation of metals in mushrooms.