Conditioning adhesive contacts between the neutrophils and the endotheliocytes by Staphylococcus aureus

We have developed a model for evaluating the integral intercellular interactions in the “endotheliocyte‐neutrophil” system and have shown the high variability of adhesion contacts in different donors associated with different expression profiles of neutrophils. Two methods (forсe spectroscopy‐spectroscopy and scanning ion‐conductance microscopy) showed a decrease in the rigidity of the membrane‐cytoskeletal complex of neutrophils under the influence of Staphylococcus aureus 2879 M. Adding this strain to the “endotheliocyte‐neutrophil” system caused a statistically significant decrease in the adhesion force and adhesion work, which indicates a change in the expression profile and physicochemical properties of membranes of both types of interacting cells (neutrophils and endotheliocytes).     

1980—2018年祁连山南坡土地利用变化及其驱动力

祁连山是我国第一阶梯和第二阶梯的分界线,生态环境脆弱,对过渡地带土地利用变化及其驱动力研究具有重要的生态意义。本研究以祁连山南坡为研究区,基于1980—2018年遥感影像数据,运用空间自相关分析法、ArcGIS空间分析方法和主成分分析法分析了土地利用的时空变化特征及其驱动力。结果表明: 1980—2018年,草地是研究区土地利用类型的主体,建设用地所占比重最小,水域、草地表现为下降趋势,未利用土地、建设用地和耕地均呈现出增长态势,林地变化较小。不同地类单一土地利用动态度从大到小依次为:建设用地＞水域＞耕地＞未利用土地＞林地＞草地,综合土地利用动态度为0.9%。不同土地利用类型空间分布表现出空间集聚性特征。耕地增加的区域和林地、草地减少的区域主要分布在门源县城所处大通河谷地西北侧,天峻县东北部大通河上游地区存在工矿建设用地占用草地的现象。土地利用变化驱动力主要为人口数量、科技、城市化、经济发展水平和政策。本研究结果可为政府合理规划和利用土地资源提供依据,对祁连山南坡生态环境保护和社会经济可持续发展具有重大意义。     

The AutoDock suite at 30

The AutoDock suite provides a comprehensive toolset for computational ligand docking and drug design and development. The suite builds on 30 years of methods development, including empirical free energy force fields, docking engines, methods for site prediction, and interactive tools for visualization and analysis. Specialized tools are available for challenging systems, including covalent inhibitors, peptides, compounds with macrocycles, systems where ordered hydration plays a key role, and systems with substantial receptor flexibility. All methods in the AutoDock suite are freely available for use and reuse, which has engendered the continued growth of a diverse community of primary users and third‐party developers.     

Single-Molecule Force Spectroscopy of Protein Folding

The use of force probes to induce unfolding and refolding of single molecules through the application of mechanical tension, known as single-molecule force spectroscopy (SMFS), has proven to be a powerful tool for studying the dynamics of protein folding. Here we provide an overview of what has been learned about protein folding using SMFS, from small, single-domain proteins to large, multi-domain proteins. We highlight the ability of SMFS to measure the energy landscapes underlying folding, to map complex pathways for native and non-native folding, to probe the mechanisms of chaperones that assist with native folding, to elucidate the effects of the ribosome on co-translational folding, and to monitor the folding of membrane proteins.     

The coordination of spindle‐positioning forces during the asymmetric division of the Caenorhabditis elegans zygote

In Caenorhabditis elegans zygote, astral microtubules generate forces essential to position the mitotic spindle, by pushing against and pulling from the cortex. Measuring microtubule dynamics there, we revealed the presence of two populations, corresponding to pulling and pushing events. It offers a unique opportunity to study, under physiological conditions, the variations of both spindle‐positioning forces along space and time. We propose a threefold control of pulling force, by polarity, spindle position and mitotic progression. We showed that the sole anteroposterior asymmetry in dynein on‐rate, encoding pulling force imbalance, is sufficient to cause posterior spindle displacement. The positional regulation, reflecting the number of microtubule contacts in the posterior‐most region, reinforces this imbalance only in late anaphase. Furthermore, we exhibited the first direct proof that dynein processivity increases along mitosis. It reflects the temporal control of pulling forces, which strengthens at anaphase onset following mitotic progression and independently from chromatid separation. In contrast, the pushing force remains constant and symmetric and contributes to maintaining the spindle at the cell centre during metaphase.     

黄河首曲玛曲县高寒湿地景观格局演变

高寒湿地是青藏高原地区最重要的生态水源涵养区之一, 也是局部气候的有效调节者, 其动态变化与成因亟待深入研究。该研究基于遥感图像分析、地理信息系统空间分析和景观生态指数分析结合的方法, 以黄河首曲玛曲县高寒湿地为研究对象, 对1995-2018年6期湿地的动态变化进行研究。结果表明, 研究区湿地在1995-2010年间不断退化, 1995-2010年湿地面积总共减少了18 680.31 hm²。在2010-2018年间黄河首曲高寒湿地面积有所增加, 但与20世纪90年代相比, 21世纪初开始湿地的面积普遍呈现下降趋势; 1995-2010年湿地斑块数不断增加, 斑块密度不断增大, 平均斑块面积下降, 景观的破碎度升高; 2010-2015年湿地斑块数和斑块密度减少, 2015-2018年湿地斑块数和斑块密度增加, 平均斑块面积先增大后减小, 景观的破碎度先降低后升高。1995-2010年研究区高寒湿地景观Shannon多样性指数和Shannon均匀度指数均呈现下降的趋势, 湿地的景观结构趋于简单, 景观类型分布更加集中。2010-2018年湿地景观Shannon多样性指数和Shannon均匀度指数均呈现上升趋势, 湿地的景观结构趋于复杂, 景观类型增加且分布更加分散。进一步的驱动力分析表明, 引起黄河首曲高寒湿地景观格局演变的主要因素是蒸发量和降水量, 其次是人口数量和大牲畜数量等人类活动影响。气候因子是影响黄河首曲高寒湿地面积变化的主要原因, 过度的人类经济活动在一定程度上加剧了湿地的变化。     

A muscle-path-plane method for representing muscle contraction during joint movement

Traditional muscle paths (the straight-line model and the viapoint-line model) emphasise either the mechanical properties that arouse joint movement or the morphological characteristics of the muscles. To consider both the factors, a muscle-path-plane (MPP) method is introduced to model the paths of muscles during joint movement. This method is based on the premise that there is a MPP, constructed by origin, insertion and MPP control point, which represents the major direction of the muscle contraction for an arbitrary joint configuration at any time. Then, we can calculate the functions and the lengths of the muscle paths during instantaneous joint movement in MPP by mathematical approaches. Taking the triceps brachii as an example, the lengths of its paths during elbow flexion are calculated and compared with the relative studies reported in the literature. It is concluded that this method can provide an insight into the simulation of the muscle contraction.     

A critical examination of the maximum velocity of shortening used in simulation models of human movement

The maximum velocity of shortening of a muscle is an important parameter in musculoskeletal models. The most commonly used values are derived from animal studies; however, these values are well above the values that have been reported for human muscle. The purpose of this study was to examine the sensitivity of simulations of maximum vertical jumping performance to the parameters describing the force–velocity properties of muscle. Simulations performed with parameters derived from animal studies were similar to measured jump heights from previous experimental studies. While simulations performed with parameters derived from human muscle were much lower than previously measured jump heights. If current measurements of maximum shortening velocity in human muscle are correct, a compensating error must exist. Of the possible compensating errors that could produce this discrepancy, it was concluded that reduced muscle fibre excursion is the most likely candidate.     

A method to determine whether a musculoskeletal model can resist arbitrary external loadings within a prescribed range

Computational models of the musculoskeletal system are prone to design errors. It is possible to create a model that cannot satisfy equilibrium conditions for a set of external loading conditions. A model is ‘loadable’ if there exists a set of muscle forces that can resist an arbitrary applied force within a prescribed range. In this study, a novel mathematical method is introduced to determine whether models are loadable. In addition, an idealised musculoskeletal model is presented in order to develop the theory behind the mathematical method. The method uses the simplex algorithm to determine feasibility of the linear programming problem and can determine loadability for an arbitrary, continuous range of external forces. The method was applied to a three-dimensional model of the shoulder and correctly determined loadability for a range of externally applied forces.     

Development of software for human muscle force estimation

Muscle force estimation (MFE) has become more and more important in exploring principles of pathological movement, studying functions of artificial muscles, making surgery plan for artificial joint replacement, improving the biomechanical effects of treatments and so on. At present, existing software are complex for professionals, so we have developed a new software named as concise MFE (CMFE). CMFE which provides us a platform to analyse muscle force in various actions includes two MFE methods (static optimisation method and electromyographic-based method). Common features between these two methods have been found and used to improve CMFE. A case studying the major muscles of lower limb of a healthy subject walking at normal speed has been presented. The results are well explained from the effect of the motion produced by muscles during movement. The development of this software can improve the accuracy of the motion simulations and can provide a more extensive and deeper insight in to muscle study.