Co-translational Folding Intermediate Dictates Membrane Targeting of the Signal Recognition Particle Receptor

Much of our knowledge on the function of proteins is deduced from their mature, folded states. However, it is unknown whether partially synthesized nascent protein segments can execute biological functions during translation and whether their premature folding states matter. A recent observation that a nascent chain performs a distinct function, co-translational targeting in vivo, has been made with the Escherichia coli signal recognition particle receptor FtsY, a major player in the conserved pathway of membrane protein biogenesis. FtsY functions as a membrane-associated entity, but very little is known about the mode of its targeting to the membrane. Here we investigated the underlying structural mechanism of the co-translational FtsY targeting to the membrane. Our results show that helices N_2–4, which mediate membrane targeting, form a stable folding intermediate co-translationally that greatly differs from its fold in the mature FtsY. These results thus resolve a long-standing mystery of how the receptor targets the membrane even when deleted of its alleged membrane targeting sequence. The structurally distinct targeting determinant of FtsY exists only co-translationally. Our studies will facilitate further efforts to seek cellular factors required for proper targeting and association of FtsY with the membrane. Moreover, the results offer a hallmark example for how co-translational nascent intermediates may dictate biological functions.     

Physiological responses to folivory and phytopathogens in a riparian tree,Brabejum stellatifolium,native to the fynbos biome of South Africa

The canopies of many tree species sustain a large diversity of folivorous arthropods and phytopathogenic fungi. These organisms are thought to influence overall tree and stand productivity. Leaf diseases caused by Phyllosticta owaniana and Periconiella velutina, phytopathogenic fungi commonly found on the native riparian tree Brabejum stellatifolium (wild almond), like any other leaf disease, can potentially reduce a plant's photosynthetic efficiency. In addition to these two phytopathogens, the weevils Setapion provinciale and Setapion quantillum are abundant in wild almond canopies. Despite their pervasive occurrence, the impacts of these phytopathogens and arthropods on host tree leaf physiology have not been examined. The gas exchange response of wild almond leaves to phytopathogens and folivore damage was assessed. Leaf nitrogen, phosphorus and water content were also determined. Declines in photosynthetic rates and other physiological parameters were associated with increasing damage severity by weevils and phytopathogens in leaves of B. stellatifolium. Nitrogen and phosphorus contents were negatively associated with disease severity. Water and phosphorus contents were also negatively correlated with increased weevil damage, while nitrogen content was positively correlated with it. The observed responses of B. stellatifolium metabolic functioning to fungal pathogen and folivory indicate a possibility of suppressed wild populations of wild almond.     

Triazavirine supramolecular complexes as modifiers of the peptide oligomeric structure

In this study, we present molecular dynamics simulations of the antiviral drug triazavirine, that affects formation of amyloid-like fibrils of the model peptide (SI). According to our simulations, triazavirine is able to form linear supramolecular structures which can act as shields and prevent interactions between SI monomers. This model, as validated by simulations, provides an adequate explanation of triazavirine’s mechanism of action as it pertains to SI peptide fibril formation.     

羊骨酶解液的植物乳杆菌发酵

为进一步提高羊骨酶解液的营养价值和生物利用度,探讨乳酸菌发酵对钙离子释放、短肽形成以及酶解液抗氧化活性的影响。首先从7株乳酸菌中筛选出了产蛋白酶能力最强的植物乳杆菌,接种羊骨酶解液,以发酵液中Ca~(2+)浓度为指标,响应面法优化得到发酵工艺:酶解液中添加1%的麦芽糖,调节起始pH为5.5,以4%接种量接种驯化好的植物乳杆菌,37℃摇床发酵14 h。发酵过程中,植物乳杆菌活菌数与Ca~(2+)含量(R=0.495,P0.01)和短肽得率(R=0.655,P0.01)呈极显著正相关,而多肽生成量与短肽得率呈负相关(R=–0.013)。发酵液中的Ca~(2+)浓度(P0.05)、水解度(P0.01)、短肽得率(P0.01)、羟脯氨酸含量(P0.01)均显著高于酶解液(P0.01),植物乳杆菌活菌数达到94.6×10~8 CFU/m L。发酵还可使酶解液对DPPH、·OH、O_2~-·三种自由基的清除能力显著提高(P0.01,P0.05)。综上所述,以植物乳杆菌发酵羊骨酶解液可进一步促进骨钙的转化和胶原短肽的生成并显著提高其体外抗氧化能力,短肽和Ca~(2+)反过来促进植物乳杆菌的繁殖,增强了酶解液的益生功能,乳酸菌产生的维生素、胞外多糖等物质使羊骨酶解液更富营养。     

Calmodulin as a protein linker and a regulator of adaptor/scaffold proteins

Calmodulin (CaM) is a universal regulator for a huge number of proteins in all eukaryotic cells. Best known is its function as a calcium-dependent modulator of the activity of enzymes, such as protein kinases and phosphatases, as well as other signaling proteins including membrane receptors, channels and structural proteins. However, less well known is the fact that CaM can also function as a Ca^2 +-dependent adaptor protein, either by bridging between different domains of the same protein or by linking two identical or different target proteins together. These activities are possible due to the fact that CaM contains two independently-folded Ca^2 + binding lobes that are able to interact differentially and to some degree separately with targets proteins. In addition, CaM can interact with and regulates several proteins that function exclusively as adaptors. This review provides an overview over our present knowledge concerning the structural and functional aspects of the role of CaM as an adaptor protein and as a regulator of known adaptor/scaffold proteins.     

Magnesium Activates Microsecond Dynamics to Regulate Integrin-Collagen Recognition

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Effects of fencing on ecosystem carbon exchange at meadow steppe in the northern slope of the Tianshan Mountains

草本层和大气间的碳交换及其对环境因子的响应是目前研究的热点。该研究通过静态箱法, 采用LI-840 CO₂/H₂O红外分析仪, 对新疆天山北坡草甸草原围封9年的样地和围栏外自然放牧生态系统碳交换进行监测, 分析了围栏内外生态系统碳交换的差异性、日变化、季节变化及其与环境因子的关系。结果表明: 围栏内生态系统碳交换高于围栏外, 围栏内外表现出明显的差异性; 围栏内外生态系统碳交换均存在明显的日变化和季节变化规律, 呈单峰曲线, 且在植物生长季峰形比较明显。在整个监测期间, 围栏内外生态系统CO₂净交换最小值分别为-7.62和-6.63 μmol·m ^-2·s ^-1, 生态系统呼吸最大值分别为8.55和7.04 μmol·m ^-2·s ^-1, 生态系统总初级生产力最大值分别为-14.66和-13.89 μmol·m ^-2·s ^-1。因围栏内植被得到保护, 草本植物生长茂盛, 光合作用强, 生态系统CO₂净交换较小, 同时有机碳的输入增强了生态系统呼吸。分析发现生态系统碳交换与气温和0-10 cm土壤温度显著相关, 与气温的相关性高于与0-10 cm土壤温度的相关性, 且围栏内禁牧处理相关性高于围栏外自然放牧草地; 土壤含水量与生态系统碳交换存在一定的相关性, 但其相关性略低于温度与生态系统碳交换的相关性。     

Contribution of volatile organic compound fluxes to the ecosystem carbon budget of a poplar short‐rotation plantation

Biogenic volatile organic compounds (BVOCs) are major precursors of both ozone and secondary organic aerosols (SOA) in the troposphere and represent a non‐negligible portion of the carbon fixed by primary producers, but long‐term ecosystem‐scale measurements of their exchanges with the atmosphere are lacking. In this study, the fluxes of 46 ions corresponding to 36 BVOCs were continuously monitored along with the exchanges of mass (carbon dioxide and water vapor) and energy (sensible and latent heat) for an entire year in a poplar (Populus) short‐rotation crop (SRC), using the eddy covariance methodology. BVOC emissions mainly consisted of isoprene, acetic acid, and methanol. Total net BVOC emissions were 19.20 kg C ha^?1 yr^?1, which represented 0.63% of the net ecosystem exchange (NEE), resulting from ?23.59 Mg C ha^?1 yr^?1 fixed as CO₂ and 20.55 Mg C ha^?1 yr^?1 respired as CO₂ from the ecosystem. Isoprene emissions represented 0.293% of NEE, being emitted at a ratio of 1 : 1709 mol isoprene per mol of CO₂ fixed. Based on annual ecosystem‐scale measurements, this study quantified for the first time that BVOC carbon emissions were lower than previously estimated in other studies (0.5–2% of NEE) on poplar trees. Furthermore, the seasonal and diurnal emission patterns of isoprene, methanol, and other BVOCs provided a better interpretation of the relationships with ecosystem CO₂ and water vapor fluxes, with air temperature, vapor pressure deficit, and photosynthetic photon flux density.     

Bumetanide-sensitive Ion Fluxes in Vascular Smooth Muscle Cells: Lack of Functional Na+, K+, 2 Cl− Cotransport

To examine the involvement of Na⁺,K⁺,2Cl⁻ cotransport in monovalent ion fluxes in vascular smooth muscle cells (VSMC), we compared the effect of bumetanide on ⁸⁶Rb, ³⁶Cl and ²²Na uptake by quiescent cultures of VSMC from rat aorta. Under basal conditions, the values of bumetanide-sensitive (BS) inward and outward ⁸⁶Rb fluxes were not different. Bumetanide decreased basal ⁸⁶Rb uptake by 70–75% with a K _i of ∼0.2–0.3 μm. At concentrations ranging up to 1 μm, bumetanide did not affect ³⁶Cl influx and reduced it by 20–30% in the range from 3 to 100 μm. In contrast to ⁸⁶Rb and ³⁶Cl influx, bumetanide did not inhibit ²²Na uptake by VSMC. BS ⁸⁶Rb uptake was completely abolished in Na⁺- or Cl⁻-free media. In contrast to ⁸⁶Rb, basal BS ³⁶Cl influx was not affected by Na⁺ _o and K⁺ _o . Hyperosmotic and isosmotic shrinkage of VSMC increased ⁸⁶Rb and ³⁶Cl influx to the same extent. Shrinkage-induced increments of ⁸⁶Rb and ³⁶Cl uptake were completely abolished by bumetanide with a K _i or ∼0.3 μm. Shrinkage did not induce BS ⁸⁶Rb and ³⁶Cl influx in (Na⁺ or Cl⁻)- and (Na⁺ or K⁺)-depleted media, respectively. In the presence of an inhibitor of Na⁺/H⁺ exchange (EIPA), neither hyperosmotic nor isosmotic shrinkage activated ²²Na influx. Bumetanide (1 μm) did not modify basal VSMC volume and intracellular content of sodium, potassium and chloride but abolished the regulatory volume increase in isosmotically-shrunken VSMC. These data demonstrate the absence of the functional Na⁺,K⁺,2Cl⁻ cotransporter in VSMC and suggest that in these cells basal and shrinkage-induced BS K⁺ influx is mediated by (Na⁺ _o + Cl⁻ _o )-dependent K⁺/K⁺ exchange and Na⁺ _o -dependent K⁺,Cl⁻ cotransport, respectively. Received: 30 January 1996/Revised: 20 May 1996     

Carbon isotope discrimination in Quercus ilex resprouts after fire and tree-fell

Ecophysiological differences related to photosynthesis were compared in holm oak Quercus ilex leaves from undisturbed holm-oak vegetation, resprouts after fire and resprouts after tree-fell. No significant differences in any parameter measured were observed between the two kinds of resprout throughout the first growing season following disturbance. Resprouting leaves showed lower carbon isotope discrimination () and intercellular CO₂ concentration (p _i), and higher photosynthesis, leaf conductance and transpiration rates than leaves from undisturbed stands. Nitrogen, soluble protein content and ribulose bisphosphate carboxylase (RuBPCase) activity were 88%, 96% and 45% higher respectively, in both kinds of resprout. The results indicate that photosynthetic capacity, rather than stomatal conductance, is the limiting factor in photosynthesis in resprouts, Chlorophyll content and chlorophyll a/b ratio did not differ between resprouts and undisturbed leaves, indicating that the observed differences were not a result of differences in light environment during leaf development. Leaf mass per area (LMA), was 80% higher in the resprouts, and was negatively related (r=–0.86) to and positively related (r=0.87) to N content. Enhanced carbon assimilation after disturbances resulted in higher water use efficiency, as indicated by lower values in the resprouts. We conclude that the cause of defoliation was not relevant in the physiology of the resprouts, suggesting the importance of underground organs.